CN185542

Overview
NameCN185542
Unique NameCN185542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9518 contig Csv1_Contig9518:308..1049. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: TRNH1_ARATH (Tropinone reductase homolog At1g07440 OS=Arabidopsis thaliana GN=At1g07440 PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 6.167e-55
Identity = 112/184 (60.87%), Postives = 134/184 (72.83%), Query Frame = -2
Query:  190 LINQVSSLLDGKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGGFPAHAFFF 741
            L+  VSS+  GKL+ILINN+G    K T++YTAEDFSF ++TN ESAY+L QLAHPLLKASG  +I+ MSS+ G VS    GSIY ATKGA+N LAR LACEWA D IR N+V P  + TPL E+  +DE F K V  R P+ R G+P E+SSLVAFLCMPAASYITGQTI  DGG   + F +
Sbjct:   81 LMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVS-ASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVYDDE-FKKVVISRKPLGRFGEPEEVSSLVAFLCMPAASYITGQTICVDGGLTVNGFSY 262          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: TRNH_DATST (Tropinone reductase homolog OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.519e-53
Identity = 104/185 (56.22%), Postives = 132/185 (71.35%), Query Frame = -2
Query:  196 LINQVSSLLDGKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVE---GRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGGFPAHAF 741
            L+  V+S  +GKLNILINN GTTI K    +TAED+S +M TNFE++YNLCQLAHPLLKASG ASIV  SS   GV  V   SIY A+KGA+N + + LACEWA+D+IR N+V PW + TP+ E+     +  K +E   GR PM+R G+P+E+SSLV +LC+P ASYITGQ I  DGG+  + F
Sbjct:   84 LMESVTSSFNGKLNILINNAGTTIPKEATNFTAEDYSIIMGTNFEASYNLCQLAHPLLKASGNASIVFNSS-AAGVIAVPLSSIYAASKGAINQVTKSLACEWAKDSIRVNAVAPWIINTPIIEAACQVPSQKKNIESLIGRAPMKRAGEPSEVSSLVTYLCLPTASYITGQIICVDGGYTVNGF 267          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: TRN1_DATST (Tropinone reductase 1 OS=Datura stramonium GN=TR1 PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.624e-47
Identity = 94/187 (50.27%), Postives = 129/187 (68.98%), Query Frame = -2
Query:  193 LINQVSSLLDGKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEG----RTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGGFPAHAFF 741
            L+  V+ + DGKLNIL+NN G  I K   ++T +D++ +M TNFE+AY+L Q+A+PLLKAS   +++ +SS+  G S + + S+Y A+KGA+N + + LACEWA+DNIR NSV P  + TPL E+ +      KE       +TPM R GKP E+S+L+AFLC PAASYITGQ I ADGGF A+  F
Sbjct:   88 LMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSI-AGFSALPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTPMGRAGKPQEVSALIAFLCFPAASYITGQIIWADGGFTANGGF 273          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: TRN2_DATST (Tropinone reductase 2 OS=Datura stramonium GN=TR2 PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.174e-43
Identity = 92/186 (49.46%), Postives = 124/186 (66.67%), Query Frame = -2
Query:  193 LINQVSSLLDGKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLND---EAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGGFPAHAFF 741
            L+N V++   GKLNIL+NN G  I K   +YT ED+S +M+ NFE+AY+L  LAHP LKAS   ++V +SSV G ++ V   ++YGATKGAM+ L R LA EWA+DNIR N V P  + T L E  + D   +  L ++  R  +RR G+P E++++VAFLC PAASY+TGQ I  DGG  A+  F
Sbjct:   76 LMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALA-VPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCALRRMGEPKELAAMVAFLCFPAASYVTGQIIYVDGGLMANCGF 260          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: TRN2_HYONI (Tropinone reductase 2 OS=Hyoscyamus niger GN=TR2 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.687e-42
Identity = 90/182 (49.45%), Postives = 121/182 (66.48%), Query Frame = -2
Query:  193 VSSLLDGKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLND---EAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGGFPAHAFF 729
            VS+   GKLNIL+NN G  I K   +YT ED+S +M+ NFE+AY+L  LAHP LKAS   ++V +SS+  G S +   ++YGATKGAM+ L R LA EWA+DNIR N V P  + T + E  + D   +  L ++  R  +RR G+P E++++VAFLC PAASY+TGQ I  DGGF A+  F
Sbjct:   80 VSNHFHGKLNILVNNAGIVIYKEAKDYTMEDYSHIMSINFEAAYHLSVLAHPFLKASERGNVVFISSI-SGASALPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSMVEMTIQDPEQKENLDKLIDRCALRRMGEPKELAAVVAFLCFPAASYVTGQIIYVDGGFMANGGF 260          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: BACC2_BACSU (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus subtilis GN=bacC PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.891e-20
Identity = 66/185 (35.68%), Postives = 103/185 (55.68%), Query Frame = -2
Query:  205 NQVSSLLD--GKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTE-SFL-NDEAFLKEVEGR----TPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGGFPA 735
            N + S +D  G L++LINN G  I     E    +++ ++  N    + + + A   +  SG  +I+   SV G V+  D  + Y A+KG +  L R +A ++A+ NIR N V P  + TPL E SFL N+E  L+E++       P+ R GKP EI++++ FL    +SY+TG  I+ADGG+ A
Sbjct:   69 NAIRSAVDKFGGLDVLINNAGIEIVAPIHEMELSNWNKVLNVNLTGMFLMSKHALKYMLKSGKGNIINTCSVGGVVAWPDIPA-YNASKGGVLQLTRSMAVDYAKHNIRVNCVCPGIIDTPLNEKSFLENNEGTLEEIKKEKAKVNPLLRLGKPEEIANVMLFLASDLSSYMTGSAITADGGYTA 252          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: UCPA_ECOLI (Oxidoreductase ucpA OS=Escherichia coli (strain K12) GN=ucpA PE=1 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 3.776e-20
Identity = 58/173 (33.53%), Postives = 90/173 (52.02%), Query Frame = -2
Query:  214 DGKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFL------NDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGG 714
            +G+++IL+NN G     + ++ + +D  F +  N +  +N+ +   P + A     IV+MSSV G +      + Y  TK A+  L + LA E+AQ  IR N++ P +V TP+ ES        + E+ L E+    PMRR   P E+  L AFL    +SY+TG     DGG
Sbjct:   80 EGRIDILVNNAGVCRLGSFLDMSDDDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVADPGETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIPMRRLADPLEVGELAAFLASDESSYLTGTQNVIDGG 252          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: UCPA_ECO57 (Oxidoreductase ucpA OS=Escherichia coli O157:H7 GN=ucpA PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 8.412e-20
Identity = 57/173 (32.95%), Postives = 90/173 (52.02%), Query Frame = -2
Query:  214 DGKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAASIVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFL------NDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGG 714
            +G+++IL+NN G     + ++ + +D  F +  N +  +N+ +   P + A     IV+MSSV G +      + Y  TK A+  L + LA E+AQ  IR N++ P +V TP+ ES        + E+ L E+    P+RR   P E+  L AFL    +SY+TG     DGG
Sbjct:   80 EGRIDILVNNAGVCRLGSFLDMSDDDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVADPGETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIPLRRLADPLEVGELAAFLASDESSYLTGTQNVIDGG 252          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: ARDH_CANAL (D-arabinitol 2-dehydrogenase [ribulose-forming] OS=Candida albicans GN=ARD1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.435e-19
Identity = 59/172 (34.30%), Postives = 97/172 (56.40%), Query Frame = -2
Query:  211 GKLN-ILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQ-LAHPLLKASGAASIVLMSSVCGG-VSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLK-EVEGRTPMRRTGKPNE-ISSLVAFLCMPAASYITGQTISADGGF 711
            GK++ +L+N  G        EY A++   LM  N   ++ + Q  A PL++ +   SI+L+ S+ G  V+      +Y  +K  + HLAR LACEWA+ NIR N+++P ++ TPLT + ++    +K E E + PM+R  +P E + S++      A+SY TG  +  DGG+
Sbjct:  107 GKISSVLVNTAGYAENFPAEEYPAKNAENLMKVNGLGSFYVSQAFARPLIQNNMTGSIILIGSMSGTIVNDPQPQCMYNMSKAGVIHLARSLACEWAKYNIRVNTLSPGYILTPLTRNVISGHTEMKTEWESKIPMKRMAEPKEFVGSILYLASESASSYTTGHNLVVDGGY 278          
BLAST of CN185542 vs. ExPASy Swiss-Prot
Match: RHLG_PSEAE (Rhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase OS=Pseudomonas aeruginosa GN=rhlG PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.874e-19
Identity = 56/173 (32.37%), Postives = 89/173 (51.45%), Query Frame = -2
Query:  211 LDGKLNILINNVGTTIRKATVEYTAEDFSFLMATNFESAYNLCQLAHPLLKASGAAS----IVLMSSVCGGVSVVDAGSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGGF 717
            L  +L+IL+NN GT+   A   Y    +  +M  N  S ++  Q   PLL+ S +A     ++ + SV G  ++ +    YG +K A++ L+R+LA E   ++I  N + P   P+ +T    ND   L+      PM R G+P E+++L   L   A +Y+TG  I  DGGF
Sbjct:   82 LSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAMGEQAYAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPSRMTRHIANDPQALEADSASIPMGRWGRPEEMAALAISLAGTAGAYMTGNVIPIDGGF 254          
The following BLAST results are available for this feature:
BLAST of CN185542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
TRNH1_ARATH6.167e-5560.87Tropinone reductase homolog At1g07440 OS=Arabidops... [more]
TRNH_DATST1.519e-5356.22Tropinone reductase homolog OS=Datura stramonium P... [more]
TRN1_DATST3.624e-4750.27Tropinone reductase 1 OS=Datura stramonium GN=TR1 ... [more]
TRN2_DATST3.174e-4349.46Tropinone reductase 2 OS=Datura stramonium GN=TR2 ... [more]
TRN2_HYONI2.687e-4249.45Tropinone reductase 2 OS=Hyoscyamus niger GN=TR2 P... [more]
BACC2_BACSU2.891e-2035.68Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
UCPA_ECOLI3.776e-2033.53Oxidoreductase ucpA OS=Escherichia coli (strain K1... [more]
UCPA_ECO578.412e-2032.95Oxidoreductase ucpA OS=Escherichia coli O157:H7 GN... [more]
ARDH_CANAL1.435e-1934.30D-arabinitol 2-dehydrogenase [ribulose-forming] OS... [more]
RHLG_PSEAE1.874e-1932.37Rhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001I02_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185542 ID=CN185542; Name=CN185542; organism=Citrus sinensis; type=EST; length=742bp
TTTTTTTTTTTTTTTTTATGGAATAAAGCGACGACACTCGATAAAAGCCT
TATAAAAGACCATCCACAAGATGAGTCAAAAATCAAAACACTTACATGCT
GGCGGTTTATTAGGGCCGGAGAAATCACAACACTAAGTTATCAGATTCGA
AGATTTCAGAGAAGTGGACAAAATAAATCAGGTACTTGGGAAGAAGAATG
CATGCGCGGGAAATCCTCCGTCAGCGGAAATTGTCTGACCAGTTATATAA
GAGGCTGCAGGCATGCATAAAAATGCTACCAATGAAGATATCTCATTTGG
CTTCCCTGTGCGTCTCATTGGAGTTCGACCCTCGACTTCCTTTAAAAATG
CCTCATCATTCAGAAAAGATTCAGTTAAAGGAGTCGGGACGAACCAAGGT
GTGACAGAATTGGTCCTAATATTGTCTTGAGCCCACTCGCATGCCAAAAT
CCTCGCAAGATGGTTCATGGCTCCTTTCGTAGCTCCATATATGGATCCAG
CGTCAACAACTGACACCCCCCCACAAACAGAAGACATTAGAACAATACTT
GCTGCCCCCGAAGCTTTCAAAAGAGGATGTGCAAGTTGGCACAGATTGTA
AGCAGACTCAAAATTGGTAGCCATGAGAAACGAGAAATCTTCTGCTGTGT
ACTCCACAGTCGCCTTTCTTATAGTCGTCCCGACGTTGTTTATGAGAATG
TTAAGTTTTCCATCCAACAGAGAGGAGACTTGGTTTATAAGC
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