CN185512

Overview
NameCN185512
Unique NameCN185512
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length554
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4290 contig Csv1_Contig4290:28..581. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185512 vs. ExPASy Swiss-Prot
Match: PSRP6_ARATH (50S ribosomal protein 6, chloroplastic OS=Arabidopsis thaliana GN=PSRP6 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.444e-16
Identity = 45/85 (52.94%), Postives = 54/85 (63.53%), Query Frame = 1
Query:   82 MSISSFFGSQIVVVP------NLSSKKLGVEGKCNVGLVIENSSRPQKKATAHHMKTRPRKTQPWDVNRKPTVYXXXXXXXXDWS 318
            MS+S+ FG+ IV V            KLG  G   +G+VIE SSRPQKK+TAHH KTRP+KTQPWD+ RKPTVY        +WS
Sbjct:    1 MSVSAIFGTGIVTVAASPVLRQFQVPKLGNGG--GLGMVIECSSRPQKKSTAHHRKTRPKKTQPWDIKRKPTVYAPLPPLPAEWS 83          
BLAST of CN185512 vs. ExPASy Swiss-Prot
Match: PSRP6_SPIOL (50S ribosomal protein 6, chloroplastic OS=Spinacia oleracea GN=PSRP6 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.656e-14
Identity = 40/92 (43.48%), Postives = 56/92 (60.87%), Query Frame = 1
Query:   82 MSISSFFGSQIVVVPNL--------SSKKL--GVEGKCNVGLV-IENSSRPQKKATAHHMKTRPRKTQPWDVNRKPTVYXXXXXXXXDWSLV 324
            MS+S+ FG+++V +P++         + KL     G C  G++ IE SSRPQKK TAHHMKTRP+KT  WD+ R P VY        +W++V
Sbjct:    1 MSVSAIFGARVVTIPSVLRTSSVDGRTVKLQPSTGGSCGGGVITIECSSRPQKKGTAHHMKTRPKKTARWDIKRGPAVYPPLPPLPAEWTIV 92          
BLAST of CN185512 vs. ExPASy Swiss-Prot
Match: PSRP6_PEA (50S ribosomal protein 6, chloroplastic OS=Pisum sativum GN=PSRP6 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.303e-13
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = 1
Query:   85 SISSFFGSQIVVVPNLSSKKLGVEGK----CNVGLVIENSSRPQKKATAHHMKTRPRKTQPWDVNRKPTVYXXXXXXXXDWSLV 324
            S+SS FG  + + PN S +   +  +    C  GL+IE SSRPQKK+TAHHMKTRPRK++  D NRKPTVY        D+++V
Sbjct:    3 SVSSIFGCGVSMAPNSSLRNKAIRTERRSACG-GLLIECSSRPQKKSTAHHMKTRPRKSRLSDRNRKPTVYAPLPPLPPDFTIV 85          
The following BLAST results are available for this feature:
BLAST of CN185512 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PSRP6_ARATH2.444e-1652.9450S ribosomal protein 6, chloroplastic OS=Arabidop... [more]
PSRP6_SPIOL6.656e-1443.4850S ribosomal protein 6, chloroplastic OS=Spinacia... [more]
PSRP6_PEA3.303e-1348.8150S ribosomal protein 6, chloroplastic OS=Pisum sa... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001H10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185512 ID=CN185512; Name=CN185512; organism=Citrus sinensis; type=EST; length=554bp
GAAAGGTGGACGTGGACAAGAAATCCGTCACTCTGCAAGAGCAAACGCAG
CGCAGACCAAAGCGAAGGAAACAGAAGAGGAATGTCGATCTCATCATTTT
TCGGTTCGCAAATTGTAGTGGTTCCCAATTTATCAAGCAAGAAGTTGGGA
GTGGAAGGGAAGTGCAATGTTGGGTTGGTGATAGAGAACTCATCGAGGCC
GCAGAAGAAGGCGACGGCGCATCACATGAAAACGAGGCCACGCAAGACTC
AGCCTTGGGACGTCAATCGAAAACCAACCGTTTACCCTCCTCTGCCTCCT
CTTCCTCCTGATTGGTCACTTGTTTCTGATGATACCGACACTGATGCATC
TGCTGCTGCGCCTGGGGCCGACGCCACTGAGCCTGCCGCTTTAGAAGCAC
CACTTGCGAGTGGTTAGCTTCTTGGCTAGTGACTTCTGTCCATTTTGTTT
TGGCACTCTTTGGTTCTTGTTCTCCCTTTATGGTATCATTTTCTTGTTTT
AATGATTAATGGAAATTAGCTTCTTGTGAGTTTTAAGTAAAAAAAAAAAA
AAAA
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