CN185510

Overview
NameCN185510
Unique NameCN185510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4526 contig Csv1_Contig4526:47..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185510 vs. ExPASy Swiss-Prot
Match: TPIS_PETHY (Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1)

HSP 1 Score: 363.999 bits (933), Expect = 4.293e-100
Identity = 177/221 (80.09%), Postives = 192/221 (86.88%), Query Frame = 1
Query:   25 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKEL 687
            MGRKFFVGGNWKCNGT EEVKKI++ LN                 ++FL LVK+ LRPDFHVAAQNCWVKKGGAFTGE+SAEMLVNL IPWVILGHSERR +L ESNEFVGDKVAYALSQGLKVIACVGETLE+RE+GSTMDVVAAQTKAIADRV  W+N+V+AYEPVWAIGTGKVA+PAQAQEVH ELRKWL AN SPE+AA+TRIIYGGSVNGANCKEL
Sbjct:    1 MGRKFFVGGNWKCNGTAEEVKKILATLNAADVPSQDVVEVVVSPPYVFLPLVKNELRPDFHVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEERESGSTMDVVAAQTKAIADRVKDWTNVVVAYEPVWAIGTGKVASPAQAQEVHAELRKWLAANVSPEVAASTRIIYGGSVNGANCKEL 221          
BLAST of CN185510 vs. ExPASy Swiss-Prot
Match: TPIS_MAIZE (Triosephosphate isomerase, cytosolic OS=Zea mays PE=3 SV=3)

HSP 1 Score: 357.066 bits (915), Expect = 5.248e-98
Identity = 173/223 (77.58%), Postives = 190/223 (85.20%), Query Frame = 1
Query:   25 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAA 693
            MGRKFFVGGNWKCNGT ++V+KIV  LNEGQ              ++FL +VKS LR +FHVAAQNCWVKKGGAFTGE+SAEMLVNLG+PWVILGHSERR +L ESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIA+++  WSN+V+AYEPVWAIGTGKVATPAQAQEVH  LR WL  N SPE+A +TRIIYGGSV  ANCKELAA
Sbjct:    1 MGRKFFVGGNWKCNGTTDQVEKIVKTLNEGQVPPSDVVEVVVSPPYVFLPVVKSQLRQEFHVAAQNCWVKKGGAFTGEVSAEMLVNLGVPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAEKIKDWSNVVVAYEPVWAIGTGKVATPAQAQEVHASLRDWLKTNASPEVAESTRIIYGGSVTAANCKELAA 223          
BLAST of CN185510 vs. ExPASy Swiss-Prot
Match: TPIS_ARATH (Triosephosphate isomerase, cytosolic OS=Arabidopsis thaliana GN=CTIMC PE=1 SV=2)

HSP 1 Score: 356.681 bits (914), Expect = 6.854e-98
Identity = 176/221 (79.64%), Postives = 191/221 (86.43%), Query Frame = 1
Query:   25 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKEL 687
            M RKFFVGGNWKCNGT EEVKKIV+ LNE Q              ++FL LVKS+LR DF VAAQNCWVKKGGAFTGE+SAEMLVNL IPWVILGHSERR ILNES+EFVGDKVAYAL+QGLKVIACVGETLE+REAGSTMDVVAAQTKAIADRV++WSN+V+AYEPVWAIGTGKVA+PAQAQEVH ELRKWL  N S ++AA TRIIYGGSVNG NCKEL
Sbjct:    1 MARKFFVGGNWKCNGTAEEVKKIVNTLNEAQVPSQDVVEVVVSPPYVFLPLVKSTLRSDFFVAAQNCWVKKGGAFTGEVSAEMLVNLDIPWVILGHSERRAILNESSEFVGDKVAYALAQGLKVIACVGETLEEREAGSTMDVVAAQTKAIADRVTNWSNVVIAYEPVWAIGTGKVASPAQAQEVHDELRKWLAKNVSADVAATTRIIYGGSVNGGNCKEL 221          
BLAST of CN185510 vs. ExPASy Swiss-Prot
Match: TPIS_COPJA (Triosephosphate isomerase, cytosolic OS=Coptis japonica PE=2 SV=1)

HSP 1 Score: 352.443 bits (903), Expect = 1.293e-96
Identity = 172/222 (77.48%), Postives = 190/222 (85.59%), Query Frame = 1
Query:   25 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELA 690
            MGRKFFVGGNWKCNGT EEVKKIV++LNE +              ++FL  VK+ LR DFHVAAQNCWVKKGGAFTGE+SAEMLVNLGIPWVILGHSERR +LNESNEFVGDK AYALSQGLKVIACVGETLEQREAGST+ VVAAQTKAIA++VS W+NIV+AYEPVWAIGTGKVA+PAQAQEVHFELRKW+  N   ++A + RIIYGGSVNGAN KELA
Sbjct:    1 MGRKFFVGGNWKCNGTSEEVKKIVTLLNEAEVPSEDVVEVVVSPPYVFLPFVKNLLRADFHVAAQNCWVKKGGAFTGEVSAEMLVNLGIPWVILGHSERRALLNESNEFVGDKTAYALSQGLKVIACVGETLEQREAGSTISVVAAQTKAIAEKVSDWTNIVVAYEPVWAIGTGKVASPAQAQEVHFELRKWIKENVGADVAGSVRIIYGGSVNGANSKELA 222          
BLAST of CN185510 vs. ExPASy Swiss-Prot
Match: TPIS_ORYSJ (Triosephosphate isomerase, cytosolic OS=Oryza sativa subsp. japonica GN=TPI PE=1 SV=3)

HSP 1 Score: 350.517 bits (898), Expect = 4.912e-96
Identity = 171/223 (76.68%), Postives = 189/223 (84.75%), Query Frame = 1
Query:   25 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAA 693
            MGRKFFVGGNWKCNGT ++V KIV +LNEGQ              ++FL +VKS LRP+  VAAQNCWVKKGGAFTGE+SAEMLVNL IPWVILGHSERR +L ESNEFVGDKVAYALSQGLKVIACVGETLEQRE+GSTMDVVAAQTKAI++R+  W+N+V+AYEPVWAIGTGKVATP QAQEVH  LRKWL AN S E+A +TRIIYGGSV GANCKELAA
Sbjct:    1 MGRKFFVGGNWKCNGTTDQVDKIVKILNEGQIASTDVVEVVVSPPYVFLPVVKSQLRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRSLLGESNEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAISERIKDWTNVVVAYEPVWAIGTGKVATPDQAQEVHDGLRKWLAANVSAEVAESTRIIYGGSVTGANCKELAA 223          
BLAST of CN185510 vs. ExPASy Swiss-Prot
Match: TPIS_SECCE (Triosephosphate isomerase, cytosolic OS=Secale cereale PE=2 SV=3)

HSP 1 Score: 337.421 bits (864), Expect = 4.303e-92
Identity = 164/223 (73.54%), Postives = 185/223 (82.96%), Query Frame = 1
Query:   25 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAA 693
            MGRKFFVGGNWKCNGT  +V+ IV+ LN GQ              ++FL  VK  LRP+  VAAQNCWVKKGGAFTGE+SAEMLVNLGIPWVILGHSERR +L ES+EFVG+KVAYAL+QGLKVIACVGETLEQREAGSTM+VVA QTKAIAD++  W+N+V+AYEPVWAIGTGKVA+PAQAQEVH  LR WL  N SPE+A +TRIIYGGSV GA+CKELAA
Sbjct:    1 MGRKFFVGGNWKCNGTVSQVETIVNTLNAGQIASPDVVEVVVSPPYVFLPTVKDKLRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLGIPWVILGHSERRSLLAESSEFVGEKVAYALAQGLKVIACVGETLEQREAGSTMEVVAEQTKAIADKIKDWTNVVVAYEPVWAIGTGKVASPAQAQEVHANLRDWLKTNVSPEVAESTRIIYGGSVTGASCKELAA 223          
BLAST of CN185510 vs. ExPASy Swiss-Prot
Match: TPIS_HORVU (Triosephosphate isomerase, cytosolic OS=Hordeum vulgare PE=1 SV=3)

HSP 1 Score: 336.65 bits (862), Expect = 7.340e-92
Identity = 164/223 (73.54%), Postives = 184/223 (82.51%), Query Frame = 1
Query:   25 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAA 693
            MGRKFFVGGNWKCNGT E+V+ IV  LN GQ              ++FL +VK+ LRP+  VAAQNCWVKKGGAFTGE+SAEML NLG+PWVILGHSERR +L ES+EFVG+KVAYAL+QGLKVIACVGETLEQREAGSTM+VVA QTKAIA ++  WSN V+AYEPVWAIGTGKVATPAQAQEVH  LR WL  N SPE+A +TRIIYGGSV GA+CKELAA
Sbjct:    1 MGRKFFVGGNWKCNGTVEQVEAIVQTLNAGQIVSPDVVEVVVSPPYVFLPIVKAKLRPEIQVAAQNCWVKKGGAFTGEVSAEMLANLGVPWVILGHSERRSLLGESSEFVGEKVAYALAQGLKVIACVGETLEQREAGSTMEVVAEQTKAIAGKIKDWSNGVVAYEPVWAIGTGKVATPAQAQEVHANLRDWLKTNVSPEVAESTRIIYGGSVTGASCKELAA 223          
BLAST of CN185510 vs. ExPASy Swiss-Prot
Match: TPIS_LACSA (Triosephosphate isomerase, cytosolic (Fragment) OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 9.631e-76
Identity = 135/160 (84.38%), Postives = 150/160 (93.75%), Query Frame = 1
Query:  208 VAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKEL 687
            VAAQNCWVKKGGAFTGE+SAEML NLG+PWVILGHSERR +LNE+NEFVGDKVAYALSQGLKVIACVGETLEQREAG+TM+VVAAQTKAIAD++SSW N+VLAYEPVWAIGTGKVA+PAQAQEVH  LRKW   N S E++A+TRIIYGGSV+G+NCKEL
Sbjct:    3 VAAQNCWVKKGGAFTGEVSAEMLANLGVPWVILGHSERRALLNETNEFVGDKVAYALSQGLKVIACVGETLEQREAGTTMEVVAAQTKAIADKISSWDNVVLAYEPVWAIGTGKVASPAQAQEVHAGLRKWFCDNVSAEVSASTRIIYGGSVSGSNCKEL 162          
BLAST of CN185510 vs. ExPASy Swiss-Prot
Match: TPIS_STELP (Triosephosphate isomerase, cytosolic OS=Stellaria longipes GN=TPI PE=2 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 1.816e-74
Identity = 141/224 (62.95%), Postives = 159/224 (70.98%), Query Frame = 1
Query:   25 MGRKFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD-RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAA 693
            MGRKFFVGGNWKCNGT E V KIV  LNE                ++FL    + L+ +  VAAQNCWVKKGGAFTGE+SA+ML NLGI WVILGHSERR +L ESNEFVG K AYA S+GL VIAC+GE LE+REAG T DV   Q K+ A      W N+V+AYEPVWAIGTGKVA+P QAQEVH  +R WL  N S E+A+ TRIIYGGSVNG N   LAA
Sbjct:    1 MGRKFFVGGNWKCNGTQESVSKIVDTLNEPTIAANDVVTVVVSPPYVFLPDENAELKHEIQVAAQNCWVKKGGAFTGEVSAQMLANLGITWVILGHSERRTLLGESNEFVGKKAAYAQSEGLGVIACIGELLEEREAGKTFDVCFKQLKSFARFPAKPWDNVVVAYEPVWAIGTGKVASPEQAQEVHVAVRDWLKTNVSEEVASKTRIIYGGSVNGGNSLALAA 224          
BLAST of CN185510 vs. ExPASy Swiss-Prot
Match: TPIC_SPIOL (Triosephosphate isomerase, chloroplastic OS=Spinacia oleracea GN=TPIP1 PE=1 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.302e-72
Identity = 134/219 (61.19%), Postives = 157/219 (71.69%), Query Frame = 1
Query:   34 KFFVGGNWKCNGTPEEVKKIVSVLNEGQXXXXXXXXXXXXXXFLFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLGIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELA 690
            KFFVGGNWKCNGT E + K+VS LN                 F+++  VKSSL     ++AQNCW+ KGGAFTGEIS E L +LG  WVILGHSERR ++ E NEF+G K AYAL+QG+ VIAC+GE LE+REAG T DV   Q KA AD + SW N+V+AYEPVWAIGTGKVA+P QAQEVH  +R WL  N S E+A+ TRIIYGGSVNG NC ELA
Sbjct:   72 KFFVGGNWKCNGTKESITKLVSDLNSATLEADVDVVVAPP--FVYIDQVKSSLTGRVEISAQNCWIGKGGAFTGEISVEQLKDLGCQWVILGHSERRHVIGEQNEFIGKKAAYALNQGVGVIACIGELLEEREAGKTFDVCYQQLKAFADALPSWDNVVVAYEPVWAIGTGKVASPDQAQEVHVAVRDWLKKNVSEEVASKTRIIYGGSVNGGNCAELA 288          
The following BLAST results are available for this feature:
BLAST of CN185510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_PETHY4.293e-10080.09Triosephosphate isomerase, cytosolic OS=Petunia hy... [more]
TPIS_MAIZE5.248e-9877.58Triosephosphate isomerase, cytosolic OS=Zea mays P... [more]
TPIS_ARATH6.854e-9879.64Triosephosphate isomerase, cytosolic OS=Arabidopsi... [more]
TPIS_COPJA1.293e-9677.48Triosephosphate isomerase, cytosolic OS=Coptis jap... [more]
TPIS_ORYSJ4.912e-9676.68Triosephosphate isomerase, cytosolic OS=Oryza sati... [more]
TPIS_SECCE4.303e-9273.54Triosephosphate isomerase, cytosolic OS=Secale cer... [more]
TPIS_HORVU7.340e-9273.54Triosephosphate isomerase, cytosolic OS=Hordeum vu... [more]
TPIS_LACSA9.631e-7684.38Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_STELP1.816e-7462.95Triosephosphate isomerase, cytosolic OS=Stellaria ... [more]
TPIC_SPIOL1.302e-7261.19Triosephosphate isomerase, chloroplastic OS=Spinac... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001H09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185510 ID=CN185510; Name=CN185510; organism=Citrus sinensis; type=EST; length=693bp
CACCGACACACGCACTCGTCGAACATGGGCAGGAAGTTCTTCGTCGGCGG
TAACTGGAAATGCAATGGAACACCTGAAGAAGTGAAAAAGATAGTGAGCG
TACTCAATGAAGGTCAAGTTCCATCTTCTGATGTCGTTGAGGTCGTTGTT
AGCCCTCCGTTTCTGTTTCTTGGACTGGTGAAGAGTTCGTTGAGGCCTGA
TTTTCATGTTGCGGCACAGAATTGCTGGGTCAAGAAGGGAGGTGCTTTCA
CCGGTGAGATTAGTGCGGAAATGCTCGTCAATTTGGGTATTCCTTGGGTC
ATTCTTGGTCATTCTGAAAGGAGACTCATTTTGAATGAATCAAATGAGTT
TGTTGGGGATAAGGTTGCATATGCACTTTCTCAAGGTTTGAAGGTGATTG
CTTGTGTTGGTGAGACACTTGAGCAGCGTGAAGCAGGATCTACTATGGAT
GTTGTTGCTGCACAAACTAAAGCAATCGCAGATCGAGTCTCAAGCTGGTC
AAACATTGTTTTGGCCTATGAACCTGTGTGGGCTATTGGAACTGGGAAGG
TTGCCACTCCAGCGCAGGCTCAAGAAGTACATTTTGAACTGAGGAAATGG
CTTTTTGCAAACACCAGTCCTGAAATTGCTGCAGCAACACGGATCATCTA
CGGAGGATCCGTAAATGGTGCAAACTGCAAGGAATTGGCTGCA
back to top