CN185501

Overview
NameCN185501
Unique NameCN185501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length768
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB2_ARATH (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial OS=Arabidopsis thaliana GN=SDH2-2 PE=1 SV=2)

HSP 1 Score: 332.028 bits (850), Expect = 4.443e-94
Identity = 154/176 (87.50%), Postives = 160/176 (90.91%), Query Frame = 1
Query:   28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGSASTITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555
            IK+E+DPSLTFRRS  EGICGSCAMNIDGCNGLACLTKI      +TITPLPHMFVIKDLVVDMTN YNQYKSIEPWLKRKNP  +PGKEI QSKKDRAKLDGMYECILCACCSTSCPSYWW  E+YLGPAALLHA  WISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACP+
Sbjct:   87 IKNEMDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIESGSKETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPASVPGKEILQSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPK 262          

HSP 2 Score: 34.6538 bits (78), Expect = 4.443e-94
Identity = 15/17 (88.24%), Postives = 16/17 (94.12%), Query Frame = 3
Query:  549 PKGLNPGKQIINIKQLQ 599
            PKGLNPGKQI +IKQLQ
Sbjct:  261 PKGLNPGKQITHIKQLQ 277          
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB1_ARATH (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial OS=Arabidopsis thaliana GN=SDH2-1 PE=1 SV=2)

HSP 1 Score: 328.946 bits (842), Expect = 3.728e-93
Identity = 153/176 (86.93%), Postives = 159/176 (90.34%), Query Frame = 1
Query:   28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGSASTITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555
            IK+E+DPSLTFRRS  EGICGSCAMNIDGCNGLACLTKI    S +TITPLPHMFVIKDLVVDMTN YNQYKSIEPWLKRK P  +P KEI QSKKDRAKLDGMYECILCACCSTSCPSYWW  E+YLGPAALLHA  WISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACP+
Sbjct:   88 IKNEMDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIQDEASETTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKTPASVPAKEILQSKKDRAKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPK 263          

HSP 2 Score: 34.6538 bits (78), Expect = 3.728e-93
Identity = 15/17 (88.24%), Postives = 16/17 (94.12%), Query Frame = 3
Query:  549 PKGLNPGKQIINIKQLQ 599
            PKGLNPGKQI +IKQLQ
Sbjct:  262 PKGLNPGKQITHIKQLQ 278          
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_RICTY (Succinate dehydrogenase iron-sulfur subunit OS=Rickettsia typhi GN=sdhB PE=3 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.831e-65
Identity = 115/176 (65.34%), Postives = 134/176 (76.14%), Query Frame = 1
Query:   28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGSASTITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555
            IK+EID +LTFRRS  EGICGSCAMNIDG N LAC+  I        I PLPHM V+KDLV DM++ Y QY+SIEPWLK  NP P   + + QS +DR KLDG+YECILCACCSTSCPSYWW S+ YLGPA LL A  WI+DSRD+ T  RLEA++D FKLYRCHTI+NC + CP+
Sbjct:   66 IKNEIDSTLTFRRSCREGICGSCAMNIDGTNTLACIKPIEDISGDIKIYPLPHMKVVKDLVPDMSHFYTQYESIEPWLKNDNPAPSNSERL-QSIQDREKLDGLYECILCACCSTSCPSYWWNSDKYLGPAILLQAYRWIADSRDDNTGARLEALEDPFKLYRCHTIMNCTKTCPK 240          

HSP 2 Score: 25.0238 bits (53), Expect = 1.831e-65
Identity = 11/20 (55.00%), Postives = 13/20 (65.00%), Query Frame = 3
Query:  549 PKGLNPGKQIINIKQLQLKR 608
            PKGLNP K I  +K L  +R
Sbjct:  239 PKGLNPAKAIGRVKSLIAER 258          
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_RICBR (Succinate dehydrogenase iron-sulfur subunit OS=Rickettsia bellii (strain RML369-C) GN=sdhB PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.831e-65
Identity = 114/176 (64.77%), Postives = 135/176 (76.70%), Query Frame = 1
Query:   28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGSASTITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555
            IK+EID ++TFRRS  EGICGSCAMNIDG N LAC+  I        I PLPHM V+KDLV DM++ Y QY+SIEPWLK  +P P   + + QS KDR KLDG+YECILCACCSTSCPSYWW  + YLGPA LL A  WI+DSRD++T ERLEA++D FKLYRCHTI+NC + CP+
Sbjct:   66 IKNEIDSTVTFRRSCREGICGSCAMNIDGTNTLACIKPIEEISGDIKIYPLPHMKVVKDLVPDMSHFYAQYESIEPWLKTDSPAPSNAERL-QSIKDREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAILLQAYRWIADSRDDHTGERLEALEDPFKLYRCHTIMNCTKTCPK 240          

HSP 2 Score: 25.409 bits (54), Expect = 1.831e-65
Identity = 12/20 (60.00%), Postives = 13/20 (65.00%), Query Frame = 3
Query:  549 PKGLNPGKQIINIKQLQLKR 608
            PKGLNP K I  IK L  +R
Sbjct:  239 PKGLNPAKAISEIKGLIAER 258          
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_RICCN (Succinate dehydrogenase iron-sulfur subunit OS=Rickettsia conorii GN=sdhB PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.388e-65
Identity = 115/176 (65.34%), Postives = 134/176 (76.14%), Query Frame = 1
Query:   28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGSASTITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555
            IK+EID +LTFRRS  EGICGSCAMNIDG N LAC+  I        I PLPHM V+KDLV DM++ Y QY+SIEPWLK  +P P   + + QS KDR KLDG+YECILCACCSTSCPSYWW  + YLGPA LL A  WI+DSRD+ T ERLEA++D FKLYRCHTI+NC + CP+
Sbjct:   66 IKNEIDSTLTFRRSCREGICGSCAMNIDGTNTLACIKPIEDISGDIKIYPLPHMKVVKDLVPDMSHFYAQYESIEPWLKTDSPTPSNSERL-QSIKDREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAILLQAYRWIADSRDDNTGERLEALEDPFKLYRCHTIMNCTKTCPK 240          

HSP 2 Score: 25.409 bits (54), Expect = 2.388e-65
Identity = 12/20 (60.00%), Postives = 13/20 (65.00%), Query Frame = 3
Query:  549 PKGLNPGKQIINIKQLQLKR 608
            PKGLNP K I  IK L  +R
Sbjct:  239 PKGLNPAKAIGKIKSLIAER 258          
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_CHICK (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Gallus gallus GN=SDHB PE=1 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 1.173e-64
Identity = 112/177 (63.28%), Postives = 135/177 (76.27%), Query Frame = 1
Query:   28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGSAST-ITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555
            IK+E+D +LTFRRS  EGICGSCAMNI G N LAC  KI P  S +T I PLPHM+V+KDLV D++N Y QYKSIEP+LK+K+      ++  QS +DR KLDG+YECILCACCSTSCPSYWW  + YLGPA L+ A  W+ DSRD+YT+ERL  + D F LYRCHTI+NC R CP+
Sbjct:   89 IKNELDSTLTFRRSCREGICGSCAMNIAGGNTLACTKKIDPDLSKTTKIYPLPHMYVVKDLVPDLSNFYAQYKSIEPYLKKKDESKQGKEQYLQSIEDRQKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDYTEERLAQLQDPFSLYRCHTIMNCTRTCPK 265          

HSP 2 Score: 27.7202 bits (60), Expect = 1.173e-64
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 3
Query:  549 PKGLNPGKQIINIKQL 596
            PKGLNPGK I  IK++
Sbjct:  264 PKGLNPGKAIAEIKKM 279          
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_DANRE (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Danio rerio GN=sdhb PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 1.173e-64
Identity = 111/177 (62.71%), Postives = 137/177 (77.40%), Query Frame = 1
Query:   28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGSAST-ITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555
            IK+E+D +LTFRRS  EGICGSCAMNI+G N LACL KI  + S  T I PLPHM+V+KDLV DM+N Y QYKSIEP+LK+K+      ++  QS +DR KLDG+YECILCACCSTSCPSYWW ++ YLGPA L+ A  W+ DSRD++T++RL  + D F LYRCHTI+NC R CP+
Sbjct:   78 IKNEMDSTLTFRRSCREGICGSCAMNINGGNTLACLNKIDTNTSKVTKIYPLPHMYVVKDLVPDMSNFYAQYKSIEPYLKKKDESQQGKQQYLQSVEDRQKLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWMIDSRDDFTEDRLSKLQDPFSLYRCHTIMNCTRTCPK 254          

HSP 2 Score: 28.1054 bits (61), Expect = 1.173e-64
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 3
Query:  549 PKGLNPGKQIINIKQLQL 602
            PKGLNPGK I  IK++ +
Sbjct:  253 PKGLNPGKAIAEIKKMMV 270          
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_RICPR (Succinate dehydrogenase iron-sulfur subunit OS=Rickettsia prowazekii GN=sdhB PE=3 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 1.174e-64
Identity = 114/176 (64.77%), Postives = 133/176 (75.57%), Query Frame = 1
Query:   28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGSASTITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555
            IK+EID +LTFRRS  EGICGSCAMNIDG N LAC+  I        I PLPHM V+KDLV DM++ Y QY+SIEPWLK  +P P   + + QS KDR KLDG+YECILCACCSTSCPSYWW  + YLGPA LL A  WI+DSRD+ T  RLEA++D FKLYRCHTI+NC + CP+
Sbjct:   66 IKNEIDSTLTFRRSCREGICGSCAMNIDGTNTLACIKPIEDISGDIKIYPLPHMKVVKDLVPDMSHFYAQYESIEPWLKNDSPAPSNSERL-QSIKDREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAILLQAYRWIADSRDDNTGARLEALEDPFKLYRCHTIMNCTKTCPK 240          

HSP 2 Score: 25.0238 bits (53), Expect = 1.174e-64
Identity = 11/20 (55.00%), Postives = 13/20 (65.00%), Query Frame = 3
Query:  549 PKGLNPGKQIINIKQLQLKR 608
            PKGLNP K I  +K L  +R
Sbjct:  239 PKGLNPAKAIGRVKNLIAER 258          
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_XENLA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Xenopus laevis GN=sdhb PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.995e-64
Identity = 110/177 (62.15%), Postives = 137/177 (77.40%), Query Frame = 1
Query:   28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGS-ASTITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555
            IK+E+DP+LTFRRS  EGICGSCAMNI+G N LAC  +I  + S  S I PLPHM+V+KDLV D++N Y QYKSIEP+LK+K+      ++  QS +DR KLDG+YECILCACCSTSCPSYWW ++ YLGPA L+ A  W+ DSRD++T+ERL  + D F LYRCHTI+NC R CP+
Sbjct:   81 IKNEVDPTLTFRRSCREGICGSCAMNINGGNTLACTVRIDTNLSKVSKIYPLPHMYVVKDLVPDLSNFYAQYKSIEPYLKKKDKSQQGKEQYLQSIEDRDKLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWMIDSRDDFTEERLSKLQDPFSLYRCHTIMNCTRTCPK 257          

HSP 2 Score: 27.7202 bits (60), Expect = 1.995e-64
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 3
Query:  549 PKGLNPGKQIINIKQL 596
            PKGLNPGK I  IK++
Sbjct:  256 PKGLNPGKAIAEIKKM 271          
BLAST of CN185501 vs. ExPASy Swiss-Prot
Match: DHSB_XENTR (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Xenopus tropicalis GN=sdhb PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 2.601e-64
Identity = 111/177 (62.71%), Postives = 137/177 (77.40%), Query Frame = 1
Query:   28 IKSEIDPSLTFRRSRCEGICGSCAMNIDGCNGLACLTKISPSGS-ASTITPLPHMFVIKDLVVDMTNVYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAGGWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPR 555
            IK+E+DP+LTFRRS  EGICGSCAMNI+G N LAC  +I  + S  S I PLPHM+V+KDLV D++N Y QYKSIEP+LK+K+      ++  QS +DR KLDG+YECILCACCSTSCPSYWW ++ YLGPA L+ A  W+ DSRD+YT+ERL  + D F LYRCHTI+NC R CP+
Sbjct:   83 IKNEMDPTLTFRRSCREGICGSCAMNINGGNTLACTVRIDTNLSKVSKIYPLPHMYVVKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKEQYLQSIEDRDKLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWMIDSRDDYTEERLAKLQDPFSLYRCHTIMNCTRTCPK 259          

HSP 2 Score: 27.7202 bits (60), Expect = 2.601e-64
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 3
Query:  549 PKGLNPGKQIINIKQL 596
            PKGLNPGK I  IK++
Sbjct:  258 PKGLNPGKAIAEIKKM 273          
The following BLAST results are available for this feature:
BLAST of CN185501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
DHSB2_ARATH4.443e-9487.50Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB1_ARATH3.728e-9386.93Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB_RICTY1.831e-6565.34Succinate dehydrogenase iron-sulfur subunit OS=Ric... [more]
DHSB_RICBR1.831e-6564.77Succinate dehydrogenase iron-sulfur subunit OS=Ric... [more]
DHSB_RICCN2.388e-6565.34Succinate dehydrogenase iron-sulfur subunit OS=Ric... [more]
DHSB_CHICK1.173e-6463.28Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB_DANRE1.173e-6462.71Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB_RICPR1.174e-6464.77Succinate dehydrogenase iron-sulfur subunit OS=Ric... [more]
DHSB_XENLA1.995e-6462.15Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
DHSB_XENTR2.601e-6462.71Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001H02_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185501 ID=CN185501; Name=CN185501; organism=Citrus sinensis; type=EST; length=768bp
GGGGGCTGGCGGGGCCCCCTCTGATAGATCAAGAGCGAGATCGATCCTTC
CTTGACCTTCCGCCGATCCCGTTGCGAGGGGATTTGCGGCTCGTGCGCGA
TGAACATCGACGGCTGTAACGGACTCGCGTGTCTGACGAAGATTTCGCCG
TCGGGATCAGCATCGACGATAACGCCGTTACCGCACATGTTCGTGATAAA
GGACTTGGTGGTGGATATGACTAATGTTTACAACCAGTACAAAAGTATAG
AGCCGTGGCTGAAGAGGAAGAACCCGCCGCCCATGCCGGGGAAGGAGATT
CCGCAGAGTAAGAAGGACAGGGCCAAGCTGGATGGGATGTACGAGTGTAT
TCTGTGCGCCTGCTGTAGCACATCTTGCCCCAGTTATTGGTGGACCTCTG
AAGCCTATTTGGGCCCCGCTGCTTTGCTTCATGCTGGGGGGTGGATAAGT
GATAGCCGTGATGAATATACCAAGGAACGTCTGGAAGCAATAGATGATGA
GTTTAAGCTGTATCGCTGCCATACCATATTGAACTGTGCCCGTGCCTGCC
CAAGGGCTTGAACCCTGGAAAGCAGATAATAAATATCAAGCAACTTCAGC
TAAAACGGTGATCATGCCTAAGAGTCAAGTTTTGTGAATCAAGATGGTGT
GGATTTGGCCAGTTAGTTACCTGCCAACTATATGGTTTGAGTTAATAATT
TGCACATTGCTTGGATTATTCATCCCATTTGTACTTAGATTGGGATCAAA
TTTGAAGGCTTCTTGTTC
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