CN185500

Overview
NameCN185500
Unique NameCN185500
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185500_ssr129 microsatellite CN185500_ssr129:129..140. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1158 contig Csv1_Contig1158:5..619. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185500 vs. ExPASy Swiss-Prot
Match: BCAT2_ARATH (Branched-chain-amino-acid aminotransferase 2, chloroplastic OS=Arabidopsis thaliana GN=BCAT2 PE=1 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.746e-56
Identity = 103/130 (79.23%), Postives = 112/130 (86.15%), Query Frame = 2
Query:  224 DDEYADLDWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKGTLYIRPL 613
            DD YADLDWDNLGF + PADYMY MKCSK   F QG+LS Y NI+LSPSA VLNYGQ +YEGTKAYR E+G++LLFRPD NA RMK+GAERM MPSPSVDQFV+AVKQ ALANKRWVPP GKGTLYIRPL
Sbjct:   50 DDVYADLDWDNLGFGLNPADYMYVMKCSKDGEFTQGELSPYGNIQLSPSAGVLNYGQAIYEGTKAYRKENGKLLLFRPDHNAIRMKLGAERMLMPSPSVDQFVNAVKQTALANKRWVPPAGKGTLYIRPL 179          
BLAST of CN185500 vs. ExPASy Swiss-Prot
Match: BCAT1_ARATH (Branched-chain-amino-acid aminotransferase 1, mitochondrial OS=Arabidopsis thaliana GN=BCAT1 PE=1 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 2.209e-51
Identity = 100/173 (57.80%), Postives = 125/173 (72.25%), Query Frame = 2
Query:   98 LRNLIHLFRPASSSLTSKLGACYFCTSHVASL-QQPGKPSVFSDDEYADLDWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKGTLYIRPL 613
            LR  +  +   SS L+   G     T   AS+ ++    +   D+EYAD+DWDNLGFS+   D+M+  K  +  NF+QG LSRY NIEL+P+A +LNYGQG+ EG KAYR EDGR+LLFRP+LNA RMKIGAERMCM SPSV QF++ VKQ  LAN+RWVPPPGKG+LY+RPL
Sbjct:    3 LRRCLPQYSTTSSYLSKIWGFRMHGTKAAASVVEEHVSGAEREDEEYADVDWDNLGFSLVRTDFMFATKSCRDGNFEQGYLSRYGNIELNPAAGILNYGQGLIEGMKAYRGEDGRVLLFRPELNAMRMKIGAERMCMHSPSVHQFIEGVKQTVLANRRWVPPPGKGSLYLRPL 175          
BLAST of CN185500 vs. ExPASy Swiss-Prot
Match: BCAT5_ARATH (Branched-chain-amino-acid aminotransferase 5, chloroplastic OS=Arabidopsis thaliana GN=BCAT5 PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.026e-48
Identity = 85/128 (66.41%), Postives = 105/128 (82.03%), Query Frame = 2
Query:  230 EYADLDWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKGTLYIRPL 613
            E A++DWD + F +KP DYMY MKCS+   F QGQL  + NI+++P+A VLNYGQG++EG KAYR +DG ILLFRP+ NA RM+ GAERMCMPSP+V+QFV+AVK   LANKRW+PPPGKG+LYIRPL
Sbjct:   78 ELAEIDWDKIDFGLKPTDYMYAMKCSRDGEFSQGQLQPFGNIDINPAAGVLNYGQGLFEGLKAYRKQDGNILLFRPEENAIRMRNGAERMCMPSPTVEQFVEAVKTTVLANKRWIPPPGKGSLYIRPL 205          
BLAST of CN185500 vs. ExPASy Swiss-Prot
Match: BCAT3_ARATH (Branched-chain-amino-acid aminotransferase 3, chloroplastic OS=Arabidopsis thaliana GN=BCAT3 PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.750e-48
Identity = 87/129 (67.44%), Postives = 107/129 (82.95%), Query Frame = 2
Query:  230 EYADLDWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDG-RILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKGTLYIRPL 613
            E AD+DWD +GF +KPADYMY MKC+    F +G+L R+ NIE+SPSA VLNYGQG++EG KAYR +DG  ILLFRP+ NA RM+ GAERMCMP+P+V+QFV+AV +  LANKRWVPPPGKG+LY+RPL
Sbjct:   75 ELADIDWDTVGFGLKPADYMYVMKCNIDGEFSKGELQRFGNIEISPSAGVLNYGQGLFEGLKAYRKKDGNNILLFRPEENAKRMRNGAERMCMPAPTVEQFVEAVTETVLANKRWVPPPGKGSLYVRPL 203          
BLAST of CN185500 vs. ExPASy Swiss-Prot
Match: BCAT4_ARATH (Probable branched-chain-amino-acid aminotransferase 4 OS=Arabidopsis thaliana GN=BCAT4 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.638e-46
Identity = 82/135 (60.74%), Postives = 108/135 (80.00%), Query Frame = 2
Query:  209 PSVFSDDEYADLDWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKGTLYIRPL 613
            P   SD++YA++ W+ L F     DYMY  KC+  E+F++G++  +A+++L+P AAVL YGQG+YEG KAYRTEDGRILLFRPD N  R++ GA+R+ MP PSVDQFV A+KQ+ALANK+W+PPPGKGTLYIRP+
Sbjct:    9 PVSVSDEKYANVKWEELAFKFVRTDYMYVAKCNHGESFQEGKILPFADLQLNPCAAVLQYGQGLYEGLKAYRTEDGRILLFRPDQNGLRLQAGADRLYMPYPSVDQFVSAIKQVALANKKWIPPPGKGTLYIRPI 143          
BLAST of CN185500 vs. ExPASy Swiss-Prot
Match: BCAT7_ARATH (Putative branched-chain-amino-acid aminotransferase 7 OS=Arabidopsis thaliana GN=BCAT7 PE=5 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.650e-46
Identity = 81/131 (61.83%), Postives = 103/131 (78.63%), Query Frame = 2
Query:  221 SDDEYADLDWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKGTLYIRPL 613
            +D++YA++ WD LGF++ P DYMY  KC + E+F  G++  Y +I +SP A +LNYGQG++EG KAYRTEDGRI LFRPD NA RM+ GA+R+CM  PS +QFV+AVKQ  LAN +WVPPPGKG LYIRPL
Sbjct:   17 ADEKYANVKWDELGFALVPTDYMYVAKCKQGESFSTGEIVPYGDISISPCAGILNYGQGLFEGLKAYRTEDGRITLFRPDQNAIRMQTGADRLCMTPPSPEQFVEAVKQTVLANNKWVPPPGKGALYIRPL 147          
BLAST of CN185500 vs. ExPASy Swiss-Prot
Match: BCAT6_ARATH (Branched-chain-amino-acid aminotransferase 6 OS=Arabidopsis thaliana GN=BCAT6 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.650e-46
Identity = 82/144 (56.94%), Postives = 111/144 (77.08%), Query Frame = 2
Query:  182 VASLQQPGKPSVFSDDEYADLDWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKGTLYIRPL 613
            +A    P + +  +D++YA++ W+ LGF++ P DYMY  KC + E+F QG++  Y +I +SP + +LNYGQG++EG KAYRTED RI +FRPD NA RM+ GAER+CM  P+++QFV+AVKQ  LANK+WVPPPGKGTLYIRPL
Sbjct:    1 MAPSSSPLRTTSETDEKYANVKWEELGFALTPIDYMYVAKCRQGESFTQGKIVPYGDISISPCSPILNYGQGLFEGLKAYRTEDDRIRIFRPDQNALRMQTGAERLCMTPPTLEQFVEAVKQTVLANKKWVPPPGKGTLYIRPL 144          
BLAST of CN185500 vs. ExPASy Swiss-Prot
Match: ILVE_HAEIN (Branched-chain-amino-acid aminotransferase OS=Haemophilus influenzae GN=ilvE PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.269e-22
Identity = 54/125 (43.20%), Postives = 76/125 (60.80%), Query Frame = 2
Query:  239 DLDWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKG-TLYIRP 610
            DLDW+NLGFS    DY +     K   + +G+L+  + + +   +  L+YGQ  +EG KAYR +DG I LFRP  NA RM+  A+R+ MP    + FV A K++  AN+ W+ P G G TLY+RP
Sbjct:    3 DLDWNNLGFSYIKTDYRFIAHW-KDGKWDEGKLTTDSTLHIHEGSTALHYGQQCFEGLKAYRCKDGSINLFRPQANAERMQRTADRLLMPRVPTELFVRACKEVVKANQDWLGPYGSGATLYLRP 126          
BLAST of CN185500 vs. ExPASy Swiss-Prot
Match: ILVE1_BACSU (Branched-chain-amino-acid transaminase 1 OS=Bacillus subtilis GN=ilvE PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.188e-22
Identity = 52/122 (42.62%), Postives = 73/122 (59.84%), Query Frame = 2
Query:  245 DWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKGTLYIRP 610
            D  +LGF     DYM+ M   +   +   +++ YA + L PS++V +YGQ V+EG KAYRT+DGR+LLFRPD N  R+    ERM MP    +  ++A+ Q+    K WVP     +LYIRP
Sbjct:   18 DPSSLGFGQYFTDYMFVMDYEEGIGWHHPRIAPYAPLTLDPSSSVFHYGQAVFEGLKAYRTDDGRVLLFRPDQNIKRLNRSCERMSMPPLDEELVLEALTQLVELEKDWVPKEKGTSLYIRP 139          
BLAST of CN185500 vs. ExPASy Swiss-Prot
Match: ILVE_HELPJ (Branched-chain-amino-acid aminotransferase OS=Helicobacter pylori J99 GN=ilvE PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.182e-20
Identity = 51/125 (40.80%), Postives = 79/125 (63.20%), Query Frame = 2
Query:  239 DLDWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKG-TLYIRP 610
            +LDW NLGFS    D+ + +   K+ ++ QG+L     ++LS  + VL+YGQ  +EG KAYR++ G+ LLFRP  NA R++   ER+ MP  S + F+ A  ++  AN++W+ P   G +LY+RP
Sbjct:    6 NLDWKNLGFSYIKTDFRF-IATYKNGSWSQGELVSENALQLSEGSPVLHYGQACFEGLKAYRSQKGKALLFRPLENAKRLQTSCERLLMPKVSEELFLKACAEVIKANQKWLAPYKSGASLYLRP 129          
The following BLAST results are available for this feature:
BLAST of CN185500 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
BCAT2_ARATH1.746e-5679.23Branched-chain-amino-acid aminotransferase 2, chlo... [more]
BCAT1_ARATH2.209e-5157.80Branched-chain-amino-acid aminotransferase 1, mito... [more]
BCAT5_ARATH1.026e-4866.41Branched-chain-amino-acid aminotransferase 5, chlo... [more]
BCAT3_ARATH1.750e-4867.44Branched-chain-amino-acid aminotransferase 3, chlo... [more]
BCAT4_ARATH1.638e-4660.74Probable branched-chain-amino-acid aminotransferas... [more]
BCAT7_ARATH3.650e-4661.83Putative branched-chain-amino-acid aminotransferas... [more]
BCAT6_ARATH3.650e-4656.94Branched-chain-amino-acid aminotransferase 6 OS=Ar... [more]
ILVE_HAEIN6.269e-2243.20Branched-chain-amino-acid aminotransferase OS=Haem... [more]
ILVE1_BACSU8.188e-2242.62Branched-chain-amino-acid transaminase 1 OS=Bacill... [more]
ILVE_HELPJ1.182e-2040.80Branched-chain-amino-acid aminotransferase OS=Heli... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001H01_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185500 ID=CN185500; Name=CN185500; organism=Citrus sinensis; type=EST; length=615bp
GAGGCTCTCTTCTCGGTTATTAACTCTGCCAAAAGGCGTGAACACCGTTG
CAAATAGCAACACAAGAATCATGATTCTAAAGGATGGTGCTGCATGCCTC
CGCAATTTGATCCACTTATTTCGACCTGCTTCTTCTTCTTTGACGTCCAA
GCTTGGAGCTTGCTATTTCTGTACATCTCATGTTGCCTCTCTGCAACAAC
CGGGCAAACCCTCTGTTTTCAGTGATGATGAGTATGCTGATTTGGACTGG
GATAATCTTGGATTTAGTATCAAGCCAGCTGATTATATGTACACCATGAA
ATGTTCTAAACACGAAAATTTCAAACAAGGACAGCTTAGTCGGTACGCAA
ACATTGAGCTAAGCCCTTCAGCAGCAGTCTTAAATTATGGACAGGGAGTG
TACGAAGGAACAAAAGCATACAGGACAGAAGATGGGCGTATTCTTCTCTT
CCGGCCAGATCTAAATGCTTCCCGTATGAAGATAGGTGCCGAGAGGATGT
GCATGCCGTCACCCTCCGTTGATCAGTTTGTCGACGCTGTGAAACAAATA
GCTCTTGCTAACAAGCGTTGGGTTCCTCCTCCAGGAAAAGGCACACTGTA
CATCAGGCCATTGCT
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