CN185493

Overview
NameCN185493
Unique NameCN185493
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3619 contig Csv1_Contig3619:133..909. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185493 vs. ExPASy Swiss-Prot
Match: 6PGD_SYNE7 (6-phosphogluconate dehydrogenase, decarboxylating OS=Synechococcus elongatus (strain PCC 7942) GN=gnd PE=1 SV=4)

HSP 1 Score: 220.705 bits (561), Expect = 7.054e-57
Identity = 110/195 (56.41%), Postives = 139/195 (71.28%), Query Frame = -3 
Query:  188 PTIESSLDARFLSGLKEERVEAAKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAINSGISTHGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWF 772
            PTI ++++AR LS +K ER  A+++      G +    + D++  ID VR ALY SKICSYAQGM L+   S    + L LGEL RIWKGGCIIRA FL++IK+AYD +P LAN+L+ PEF + I++RQ AWRRV+ +A   GI     S+SL YFD+YRR+RLP NL QAQRDYFGAHTYER D SGSFH +WF
Sbjct:  281 PTIIAAVNARILSSIKAERQAASEILS----GPITEPFSGDRQAFIDSVRDALYCSKICSYAQGMALLAKASQVYNYGLNLGELARIWKGGCIIRAGFLNKIKQAYDADPTLANLLLAPEFRQTILDRQLAWRRVIAIAAERGIPVPAFSASLDYFDSYRRDRLPQNLTQAQRDYFGAHTYERTDRSGSFHAQWF 471
[Close]
BLAST of CN185493 vs. ExPASy Swiss-Prot
Match: 6PGD2_BACSU (6-phosphogluconate dehydrogenase, decarboxylating 2 OS=Bacillus subtilis GN=yqjI PE=1 SV=4)

HSP 1 Score: 205.682 bits (522), Expect = 2.348e-52
Identity = 104/196 (53.06%), Postives = 136/196 (69.39%), Query Frame = -3 
Query:  185 PTIESSLDARFLSGLKEERVEAAKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAINSGISTHGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWFK 772
            P I  S+ ARF+S +KEERV+A+ +     +  V    T +K++LI+ VR+AL+ SKICSYAQG   ++A S E  WDLK GE+  I++GGCIIRA FL +IK+AYDR P+L N+L+D  F   +   Q A R+V+ LA+  G+     SS+LAY+D+YR   LPANL+QAQRDYFGAHTYER D  G FHTEW K
Sbjct:  278 PIITESVFARFISAMKEERVKASGLLSGPEVKPV----TENKEELIEAVRKALFMSKICSYAQGFAQMKAASEEYNWDLKYGEIAMIFRGGCIIRAAFLQKIKEAYDREPELDNLLLDSYFKNIVESYQGALRQVISLAVAQGVPVPSFSSALAYYDSYRTAVLPANLIQAQRDYFGAHTYERTDKEGIFHTEWMK 469
[Close]
BLAST of CN185493 vs. ExPASy Swiss-Prot
Match: 6PGD_STAES (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gnd PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.988e-51
Identity = 102/192 (53.12%), Postives = 131/192 (68.23%), Query Frame = -3 
Query:  191 IESSLDARFLSGLKEERVEAAKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAINSGISTHGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEW 766
            I  S+ ARF+S +KEERV A+K  +        A    DKK  ++ +R+ALY SKICSYAQG   +R  S +  W+LKLGEL  IW+ GCIIRA FL +IK AYD N +L N+L+DP F   ++E Q A R VV  ++ +G+ T G S+S+ Y+D+YR E LPANL+QAQRDYFGAHTYER D  G FHT+W
Sbjct:  279 ITESVFARFISSIKEERVTASKSLKGPK-----AHFEGDKKTFLEKIRKALYMSKICSYAQGFAQMRKASEDNEWNLKLGELAMIWREGCIIRAQFLQKIKDAYDNNENLQNLLLDPYFKNIVMEYQDALREVVATSVYNGVPTPGFSASINYYDSYRSEDLPANLIQAQRDYFGAHTYERKDREGIFHTQW 465
[Close]
BLAST of CN185493 vs. ExPASy Swiss-Prot
Match: 6PGD_STAEQ (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gnd PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.988e-51
Identity = 102/192 (53.12%), Postives = 131/192 (68.23%), Query Frame = -3 
Query:  191 IESSLDARFLSGLKEERVEAAKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAINSGISTHGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEW 766
            I  S+ ARF+S +KEERV A+K  +        A    DKK  ++ +R+ALY SKICSYAQG   +R  S +  W+LKLGEL  IW+ GCIIRA FL +IK AYD N +L N+L+DP F   ++E Q A R VV  ++ +G+ T G S+S+ Y+D+YR E LPANL+QAQRDYFGAHTYER D  G FHT+W
Sbjct:  279 ITESVFARFISSIKEERVTASKSLKGPK-----AHFEGDKKTFLEKIRKALYMSKICSYAQGFAQMRKASEDNEWNLKLGELAMIWREGCIIRAQFLQKIKDAYDNNENLQNLLLDPYFKNIVMEYQDALREVVATSVYNGVPTPGFSASINYYDSYRSEDLPANLIQAQRDYFGAHTYERKDREGIFHTQW 465
[Close]
BLAST of CN185493 vs. ExPASy Swiss-Prot
Match: 6PGD_STAAW (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus aureus (strain MW2) GN=gnd PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.429e-51
Identity = 102/194 (52.58%), Postives = 128/194 (65.98%), Query Frame = -3 
Query:  185 IESSLDARFLSGLKEERVEAAKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAINSGISTHGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWFK 766
            I  S+ ARF+S +KEERV A+K           A    DKK  ++ +R+ALY SKICSYAQG   +R  S +  W+LKLG+L  IW+ GCIIRA FL +IK AYD NP L N+L+DP F   + E Q A R VV   + +G+ T G SSS+ Y+D+YR   LPANL+QAQRDYFGAHTYER D  G FHT+W +
Sbjct:  279 ITESVFARFISSIKEERVNASKELNGPK-----ASFDGDKKDFLEKIRKALYMSKICSYAQGFAQMRKASEDNEWNLKLGDLAMIWREGCIIRAQFLQKIKDAYDNNPGLQNLLLDPYFKNIVTEYQDALRDVVATGVQNGVPTPGFSSSINYYDSYRAADLPANLIQAQRDYFGAHTYERKDKEGVFHTQWIE 467
[Close]
BLAST of CN185493 vs. ExPASy Swiss-Prot
Match: 6PGD_STAAS (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus aureus (strain MSSA476) GN=gnd PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.429e-51
Identity = 102/194 (52.58%), Postives = 128/194 (65.98%), Query Frame = -3 
Query:  185 IESSLDARFLSGLKEERVEAAKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAINSGISTHGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWFK 766
            I  S+ ARF+S +KEERV A+K           A    DKK  ++ +R+ALY SKICSYAQG   +R  S +  W+LKLG+L  IW+ GCIIRA FL +IK AYD NP L N+L+DP F   + E Q A R VV   + +G+ T G SSS+ Y+D+YR   LPANL+QAQRDYFGAHTYER D  G FHT+W +
Sbjct:  279 ITESVFARFISSIKEERVNASKELNGPK-----ASFDGDKKDFLEKIRKALYMSKICSYAQGFAQMRKASEDNEWNLKLGDLAMIWREGCIIRAQFLQKIKDAYDNNPGLQNLLLDPYFKNIVTEYQDALRDVVATGVQNGVPTPGFSSSINYYDSYRAADLPANLIQAQRDYFGAHTYERKDKEGVFHTQWIE 467
[Close]
BLAST of CN185493 vs. ExPASy Swiss-Prot
Match: 6PGD_STAAR (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus aureus (strain MRSA252) GN=gnd PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.429e-51
Identity = 102/194 (52.58%), Postives = 128/194 (65.98%), Query Frame = -3 
Query:  185 IESSLDARFLSGLKEERVEAAKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAINSGISTHGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWFK 766
            I  S+ ARF+S +KEERV A+K           A    DKK  ++ +R+ALY SKICSYAQG   +R  S +  W+LKLG+L  IW+ GCIIRA FL +IK AYD NP L N+L+DP F   + E Q A R VV   + +G+ T G SSS+ Y+D+YR   LPANL+QAQRDYFGAHTYER D  G FHT+W +
Sbjct:  279 ITESVFARFISSIKEERVNASKELNGPK-----ASFDGDKKDFLEKIRKALYMSKICSYAQGFAQMRKASEDNEWNLKLGDLAMIWREGCIIRAQFLQKIKDAYDNNPGLQNLLLDPYFKNIVTEYQDALRDVVATGVQNGVPTPGFSSSINYYDSYRAADLPANLIQAQRDYFGAHTYERKDKEGVFHTQWIE 467
[Close]
BLAST of CN185493 vs. ExPASy Swiss-Prot
Match: 6PGD_STAAN (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus aureus (strain N315) GN=gnd PE=1 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.429e-51
Identity = 102/194 (52.58%), Postives = 128/194 (65.98%), Query Frame = -3 
Query:  185 IESSLDARFLSGLKEERVEAAKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAINSGISTHGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWFK 766
            I  S+ ARF+S +KEERV A+K           A    DKK  ++ +R+ALY SKICSYAQG   +R  S +  W+LKLG+L  IW+ GCIIRA FL +IK AYD NP L N+L+DP F   + E Q A R VV   + +G+ T G SSS+ Y+D+YR   LPANL+QAQRDYFGAHTYER D  G FHT+W +
Sbjct:  279 ITESVFARFISSIKEERVNASKELNGPK-----ASFDGDKKDFLEKIRKALYMSKICSYAQGFAQMRKASEDNEWNLKLGDLAMIWREGCIIRAQFLQKIKDAYDNNPGLQNLLLDPYFKNIVTEYQDALRDVVATGVQNGVPTPGFSSSINYYDSYRAADLPANLIQAQRDYFGAHTYERKDKEGVFHTQWIE 467
[Close]
BLAST of CN185493 vs. ExPASy Swiss-Prot
Match: 6PGD_STAAM (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=gnd PE=1 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.429e-51
Identity = 102/194 (52.58%), Postives = 128/194 (65.98%), Query Frame = -3 
Query:  185 IESSLDARFLSGLKEERVEAAKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAINSGISTHGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWFK 766
            I  S+ ARF+S +KEERV A+K           A    DKK  ++ +R+ALY SKICSYAQG   +R  S +  W+LKLG+L  IW+ GCIIRA FL +IK AYD NP L N+L+DP F   + E Q A R VV   + +G+ T G SSS+ Y+D+YR   LPANL+QAQRDYFGAHTYER D  G FHT+W +
Sbjct:  279 ITESVFARFISSIKEERVNASKELNGPK-----ASFDGDKKDFLEKIRKALYMSKICSYAQGFAQMRKASEDNEWNLKLGDLAMIWREGCIIRAQFLQKIKDAYDNNPGLQNLLLDPYFKNIVTEYQDALRDVVATGVQNGVPTPGFSSSINYYDSYRAADLPANLIQAQRDYFGAHTYERKDKEGVFHTQWIE 467
[Close]
BLAST of CN185493 vs. ExPASy Swiss-Prot
Match: 6PGD_STAAC (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus aureus (strain COL) GN=gnd PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.429e-51
Identity = 102/194 (52.58%), Postives = 128/194 (65.98%), Query Frame = -3 
Query:  185 IESSLDARFLSGLKEERVEAAKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAINSGISTHGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWFK 766
            I  S+ ARF+S +KEERV A+K           A    DKK  ++ +R+ALY SKICSYAQG   +R  S +  W+LKLG+L  IW+ GCIIRA FL +IK AYD NP L N+L+DP F   + E Q A R VV   + +G+ T G SSS+ Y+D+YR   LPANL+QAQRDYFGAHTYER D  G FHT+W +
Sbjct:  279 ITESVFARFISSIKEERVNASKELNGPK-----ASFDGDKKDFLEKIRKALYMSKICSYAQGFAQMRKASEDNEWNLKLGDLAMIWREGCIIRAQFLQKIKDAYDNNPGLQNLLLDPYFKNIVTEYQDALRDVVATGVQNGVPTPGFSSSINYYDSYRAADLPANLIQAQRDYFGAHTYERKDKEGVFHTQWIE 467
The following BLAST results are available for this feature:
BLAST of CN185493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
6PGD_SYNE77.054e-5756.416-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD2_BACSU2.348e-5253.066-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAES1.988e-5153.136-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAEQ1.988e-5153.136-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAAW4.429e-5152.586-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAAS4.429e-5152.586-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAAR4.429e-5152.586-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAAN4.429e-5152.586-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAAM4.429e-5152.586-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAAC4.429e-5152.586-phosphogluconate dehydrogenase, decarboxylating ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001G21_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001G21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185493 ID=CN185493; Name=CN185493; organism=Citrus sinensis; type=EST; length=777bp
AGGATAGAGGGTTATTCGAAAATCAAATGAAAATAAAACTTAAGATTTCC
CTTTTGTCCACGATAATAAAAAGAAAATAATTATAGTTTCCGTCAATGAA
CATTATTGGGTTCAATAATAGTGGTTCATTGAGGCAAGATACAACAACAG
ACGGTTCAAATCAGATCTTTGACTGTTTAGCAATCTTGAACCATTCAGTA
TGGAAGGATCCAGACATGTCAACCCTCTCATAGGTATGAGCTCCAAAGTA
ATCTCTTTGAGCCTGAACCAAATTAGCAGGCAGCCTCTCTCTCCTGTATG
TGTCAAAATAAGCAAGGCTGGAGGACATACCATGAGTACTAATGCCTGAA
TTGATAGCAAGGCAGACAACTCTACGCCAAGCAGATTGTCGTTCTATAAT
CTCCTTTGCAAACTCTGGATCGACAAGAACATTGGCCAGATCTGGGTTTC
TGTCATAGGCCTTCTTAATACGGTCCAAGAATATAGCACGAATAATGCAA
CCCCCCTTCCAAATCCTAGTCAGCTCCCCAAGTTTCAAGTCCCACCCCTT
CTCAATGCTCTTTGCACGTATCAAGTTCATTCCCTGGGCATAGCTGCATA
TTTTGGATGCATAGAGTGCTTGTCTCACGTCATCAATCAACTTTTTCTTA
TCAACAGTTTGCTCAGCTAGGACATCGCCAATGCCACTTGATCTGAAGAC
TTTGGCAGCTTCAACTCTTTCCTCCTTCAAACCACTTAGGAACCTGGCAT
CCAAGGATGATTCTATTGTGGGGGCAG
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