CN185488

Overview
NameCN185488
Unique NameCN185488
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185488_ssr104 microsatellite CN185488_ssr104:104..115. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2478 contig Csv1_Contig2478:80..811. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185488 vs. ExPASy Swiss-Prot
Match: NH2L1_XENTR (NHP2-like protein 1 OS=Xenopus tropicalis GN=nhp2l1 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.824e-44
Identity = 93/128 (72.66%), Postives = 103/128 (80.47%), Query Frame = -1 
Query:  299 MTGEAVNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 682
            MT   VNPKAYPLAD+ LT T+LDLVQQAANYKQL+KGANEATKTLNRGI+EFIVMAAD            L EDKNVPYVFV SKQALGRACGV+RPVIAC+VT  E SQLK QIQ L+ +IE+LL+
Sbjct:    1 MTEPEVNPKAYPLADAQLTKTLLDLVQQAANYKQLRKGANEATKTLNRGIAEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACAVTIKEGSQLKPQIQSLQQSIERLLV 128
[Close]
BLAST of CN185488 vs. ExPASy Swiss-Prot
Match: NH2L1_XENLA (NHP2-like protein 1 OS=Xenopus laevis GN=nhp2l1 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.824e-44
Identity = 93/128 (72.66%), Postives = 103/128 (80.47%), Query Frame = -1 
Query:  299 MTGEAVNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 682
            MT   VNPKAYPLAD+ LT T+LDLVQQ+ANYKQL+KGANEATKTLNRGI+EFIVMAAD            L EDKNVPYVFV SKQALGRACGV+RPVIACSVT  E SQLK QIQ ++ AIE+LL+
Sbjct:    1 MTEPEVNPKAYPLADAQLTKTLLDLVQQSANYKQLRKGANEATKTLNRGIAEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKPQIQSVQQAIERLLV 128
[Close]
BLAST of CN185488 vs. ExPASy Swiss-Prot
Match: NH2L1_RAT (NHP2-like protein 1 OS=Rattus norvegicus GN=Nhp2l1 PE=2 SV=4)

HSP 1 Score: 174.481 bits (441), Expect = 5.333e-43
Identity = 91/128 (71.09%), Postives = 102/128 (79.69%), Query Frame = -1 
Query:  299 MTGEAVNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 682
            MT   VNPKAYPLAD++LT  +LDLVQQ+ NYKQL+KGANEATKTLNRGISEFIVMAAD            L EDKNVPYVFV SKQALGRACGV+RPVIACSVT  E SQLK QIQ ++ +IE+LL+
Sbjct:    1 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 128
[Close]
BLAST of CN185488 vs. ExPASy Swiss-Prot
Match: NH2L1_MOUSE (NHP2-like protein 1 OS=Mus musculus GN=Nhp2l1 PE=2 SV=4)

HSP 1 Score: 174.481 bits (441), Expect = 5.333e-43
Identity = 91/128 (71.09%), Postives = 102/128 (79.69%), Query Frame = -1 
Query:  299 MTGEAVNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 682
            MT   VNPKAYPLAD++LT  +LDLVQQ+ NYKQL+KGANEATKTLNRGISEFIVMAAD            L EDKNVPYVFV SKQALGRACGV+RPVIACSVT  E SQLK QIQ ++ +IE+LL+
Sbjct:    1 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 128
[Close]
BLAST of CN185488 vs. ExPASy Swiss-Prot
Match: NH2L1_MACFA (NHP2-like protein 1 OS=Macaca fascicularis GN=NHP2L1 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.333e-43
Identity = 91/128 (71.09%), Postives = 102/128 (79.69%), Query Frame = -1 
Query:  299 MTGEAVNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 682
            MT   VNPKAYPLAD++LT  +LDLVQQ+ NYKQL+KGANEATKTLNRGISEFIVMAAD            L EDKNVPYVFV SKQALGRACGV+RPVIACSVT  E SQLK QIQ ++ +IE+LL+
Sbjct:    1 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 128
[Close]
BLAST of CN185488 vs. ExPASy Swiss-Prot
Match: NH2L1_HUMAN (NHP2-like protein 1 OS=Homo sapiens GN=NHP2L1 PE=1 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 5.333e-43
Identity = 91/128 (71.09%), Postives = 102/128 (79.69%), Query Frame = -1 
Query:  299 MTGEAVNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 682
            MT   VNPKAYPLAD++LT  +LDLVQQ+ NYKQL+KGANEATKTLNRGISEFIVMAAD            L EDKNVPYVFV SKQALGRACGV+RPVIACSVT  E SQLK QIQ ++ +IE+LL+
Sbjct:    1 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 128
[Close]
BLAST of CN185488 vs. ExPASy Swiss-Prot
Match: NH2L1_CAEEL (NHP2-like protein 1 homolog OS=Caenorhabditis elegans GN=M28.5 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.333e-43
Identity = 90/128 (70.31%), Postives = 102/128 (79.69%), Query Frame = -1 
Query:  299 MTGEAVNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 682
            M  + VNPKA+PLAD+NL+  ++DLVQQA NYKQLKKGANEATKTLNRGISE IVMAAD            L EDKNVPYVFV SK ALGRACGVTRPVIA S+T NE SQLK+QIQ++K+ +EKLLI
Sbjct:    1 MADDGVNPKAFPLADTNLSQKLMDLVQQAMNYKQLKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALGRACGVTRPVIAASITQNEGSQLKSQIQKIKEDVEKLLI 128
[Close]
BLAST of CN185488 vs. ExPASy Swiss-Prot
Match: NH2L1_BOVIN (NHP2-like protein 1 OS=Bos taurus GN=NHP2L1 PE=2 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 5.333e-43
Identity = 91/128 (71.09%), Postives = 102/128 (79.69%), Query Frame = -1 
Query:  299 MTGEAVNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 682
            MT   VNPKAYPLAD++LT  +LDLVQQ+ NYKQL+KGANEATKTLNRGISEFIVMAAD            L EDKNVPYVFV SKQALGRACGV+RPVIACSVT  E SQLK QIQ ++ +IE+LL+
Sbjct:    1 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 128
[Close]
BLAST of CN185488 vs. ExPASy Swiss-Prot
Match: SNU13_SCHPO (13 kDa ribonucleoprotein-associated protein OS=Schizosaccharomyces pombe GN=snu13 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.188e-42
Identity = 92/124 (74.19%), Postives = 102/124 (82.26%), Query Frame = -1 
Query:  299 AVNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 670
            +VNPKA+PLADS LT  ILDLVQQA++YKQL+KGANEATKTLNRGISEFIVMAADT           L EDKNVPYVFVPSK ALGRACGV+RPVI+ S+T+NEAS L  QIQ +K AIEKLLI
Sbjct:    2 SVNPKAFPLADSGLTQQILDLVQQASHYKQLRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALGRACGVSRPVISASITTNEASDLLPQIQAIKLAIEKLLI 125
[Close]
BLAST of CN185488 vs. ExPASy Swiss-Prot
Match: SNU13_CANAL (13 kDa ribonucleoprotein-associated protein OS=Candida albicans GN=SNU13 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.520e-41
Identity = 89/124 (71.77%), Postives = 98/124 (79.03%), Query Frame = -1 
Query:  299 AVNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 670
            A NPKA+PLADS LT  ILD+VQQ+ N +QLKKGANEATKTLNRGISEFI+MAADT           L EDKNVPYVFVPSK ALGRACGV+RPVIA SVTSN+AS +K QI  +KD IE LLI
Sbjct:    3 APNPKAFPLADSALTQQILDVVQQSQNLRQLKKGANEATKTLNRGISEFIIMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALGRACGVSRPVIAASVTSNDASSIKNQIYGIKDKIETLLI 126
The following BLAST results are available for this feature:
BLAST of CN185488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
NH2L1_XENTR4.824e-4472.66NHP2-like protein 1 OS=Xenopus tropicalis GN=nhp2l... [more]
NH2L1_XENLA4.824e-4472.66NHP2-like protein 1 OS=Xenopus laevis GN=nhp2l1 PE... [more]
NH2L1_RAT5.333e-4371.09NHP2-like protein 1 OS=Rattus norvegicus GN=Nhp2l1... [more]
NH2L1_MOUSE5.333e-4371.09NHP2-like protein 1 OS=Mus musculus GN=Nhp2l1 PE=2... [more]
NH2L1_MACFA5.333e-4371.09NHP2-like protein 1 OS=Macaca fascicularis GN=NHP2... [more]
NH2L1_HUMAN5.333e-4371.09NHP2-like protein 1 OS=Homo sapiens GN=NHP2L1 PE=1... [more]
NH2L1_CAEEL5.333e-4370.31NHP2-like protein 1 homolog OS=Caenorhabditis eleg... [more]
NH2L1_BOVIN5.333e-4371.09NHP2-like protein 1 OS=Bos taurus GN=NHP2L1 PE=2 S... [more]
SNU13_SCHPO1.188e-4274.1913 kDa ribonucleoprotein-associated protein OS=Sch... [more]
SNU13_CANAL6.520e-4171.7713 kDa ribonucleoprotein-associated protein OS=Can... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001G18_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001G18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185488 ID=CN185488; Name=CN185488; organism=Citrus sinensis; type=EST; length=736bp
TTTTTGCTCAAGTTCATTTAATCCATTCAACGGTAATCTTTACGACAATA
CCTATCCAGAGAACAGAGCACATTAAACACAGTTATAACCATTGTTTGTA
GCATCATTCATTCATTGCAGGTTCTGGTAAATATGATTCCAAAAGCTTTC
CCATAATGCATGACAAGAAAACATAAAAGACAAAAATACAAAGATTAATA
ATAGAAGATTTCCAAGCAGCACAACTACACCATCAGTCAAAGCCTCTAAC
CACCATCAAAGAGGCCCATCACACCGAATATGAATCCCATTATATTCATA
TCAAGAGCTTCTCAATGGCATCCTTCAGCTGTTGAATTTGAGTCTTCAAC
TGACTCGCCTCATTTGAGGTCACAGAGCAAGCAATGACAGGTCTTGTGAC
CCCACATGCCCTGCCAAGAGCCTGCTTTGAAGGGACAAAAACATAGGGAA
CATTCTTGTCCTCTGCAAGCAGTGGAAGATGAAGAAGAATCTCCAGAGGC
TCGGTATCAGCAGCCATCACAATAAACTCGGAGATACCTCTGTTAAGAGT
CTTAGTAGCTTCATTGGCGCCCTTTTTGAGCTGCTTGTAATTGGCAGCTT
GCTGAACGAGATCCAGTATCGTGATTGTGAGATTAGAATCTGCTAGCGGG
TAAGCTTTAGGGTTCACTGCTTCTCCTGTCATTTTCGTGGTGGCGGGGAC
GGAGGCTAGGGTTTTTGTGGCAGCTAATGAAGCCCT
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