CN185486

Overview
NameCN185486
Unique NameCN185486
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185486_ssr161 microsatellite CN185486_ssr161:161..174. BLAST: Citrus ESTs to Prunus persica proteins V1
CN185486_ssr369 microsatellite CN185486_ssr369:369..383. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2487 contig Csv1_Contig2487:1..741. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN185486 vs. ExPASy Swiss-Prot
Match: ZFP1_WHEAT (Zinc finger protein 1 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.569e-13
Identity = 48/130 (36.92%), Postives = 65/130 (50.00%), Query Frame = 2 
Query:  221 EKKKFTTMALEALNSPTTSTHNHHPFRYEDSWTKRRRSKRPRTDESPQLXXXXXXXTEEEYMALCLIMLARGTTTANTAPAERTPTLAPEQKPLDQFPEPPSLKLSYKCSVCNKAFSSYQALGGHKASHR 610
            E+ +    A  A++S T+   + H  +    W KR+RS+R R+              EEE +ALCL+ML+RG      AP              + F  P  +   +KCSVC K+FSSYQALGGHK SHR
Sbjct:   15 EQHQLDVEAAAAVSSATSGEESGHVLQ---GWAKRKRSRRQRS--------------EEENLALCLLMLSRGGKQRVQAPQP------------ESFAAP--VPAEFKCSVCGKSFSSYQALGGHKTSHR 113
The following BLAST results are available for this feature:
BLAST of CN185486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ZFP1_WHEAT7.569e-1336.92Zinc finger protein 1 OS=Triticum aestivum PE=2 SV... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001G16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001G16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185486 ID=CN185486; Name=CN185486; organism=Citrus sinensis; type=EST; length=741bp
AGGAGAGCTCAGTCACCCCTTCGCCACTACTTCCAGTATTGTAATCTTTA
GTTGACCGACTTCACTTCCCCCCACCAATTCTCCACTCTCCTCCTCTTCT
ATATATAAAGCCCCCACCTCACTCACTCTTCCATCATCATTTCCATCCAT
TTGAAATCACCTCTCTCTCTCTCTCGAAACTCAACAGATTCAACCACAAG
AGTCGAGAATTCACTAACAAGAAAAGAAAAAATTCACGACTATGGCTCTA
GAAGCTCTAAACTCCCCTACAACAAGCACCCACAATCATCATCCGTTTAG
ATACGAAGACTCATGGACTAAAAGAAGGCGCTCAAAACGACCCCGTACCG
ACGAGTCCCCACAACTACCAGCAGCAGCAGCAGCTCCCACGGAAGAAGAG
TACATGGCTCTCTGTCTCATCATGCTCGCCCGCGGTACCACCACCGCCAA
CACCGCTCCGGCCGAAAGAACCCCAACCCTGGCGCCGGAACAGAAGCCGC
TGGATCAGTTCCCGGAGCCGCCAAGTTTGAAACTCTCTTACAAGTGCAGT
GTGTGCAACAAGGCTTTCTCTTCGTACCAGGCCCTTGGTGGGCACAAAGC
CAGCCACCGCAAGAACGCTGCTGACGCCTCGGCTTCTCCCAACGCCGCAG
CCGCCAGTGACGTCACCCCACCACCGTCGGCAACGGCGAGCAGCGGAAGC
GGTGGTAGGACCCACGAGTGCTCTATTTGTCACAAGTCTTT
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