CN185483

Overview
NameCN185483
Unique NameCN185483
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2492 contig Csv1_Contig2492:821..1627. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185483 vs. ExPASy Swiss-Prot
Match: ISPH_CYAA5 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain ATCC 51142) GN=ispH PE=3 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 1.048e-74
Identity = 135/215 (62.79%), Postives = 173/215 (80.47%), Query Frame = -3
Query:  161 SFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEVRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKREEAL 805
            SFAG Y++V N+KEA+YVCDYIL G        K+ FLEKFK A S+GFDPD DL+++GIANQTTMLK ETE+IGKL E TM++K+G   +NEHF+SFNTICDATQERQDAM  +VEE+VD+++V+GG+NSSNT+HLQEI+  +GI SY IDS+KRI PGNKI +K +  ++  KENWLP+G+I +G+TSGASTPDK VE V++++FE K    L
Sbjct:  193 SFAGTYLVVLNLKEAQYVCDYILNG------GNKDEFLEKFKNAHSEGFDPDKDLIRLGIANQTTMLKSETEQIGKLFETTMLKKYGPTELNEHFMSFNTICDATQERQDAMLNLVEEEVDVMVVIGGFNSSNTTHLQEISIEKGIDSYHIDSDKRILPGNKIEHKPLEKDIETKENWLPDGKIIVGVTSGASTPDKVVEAVIERIFEEKNAGVL 401          
BLAST of CN185483 vs. ExPASy Swiss-Prot
Match: ISPH_THEEB (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Thermosynechococcus elongatus (strain BP-1) GN=ispH PE=3 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 3.050e-74
Identity = 138/210 (65.71%), Postives = 167/210 (79.52%), Query Frame = -3
Query:  176 SFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEVRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIK 805
            SFAG Y+IV N++EA YVCDYIL G        + AF+ KF KA S GFDPD DLV+VGIANQTTMLKGETE+IGKL E+TM++K+G + +NEHF+SFNTICDATQERQDAM  +V+E +DL++V+GG+NSSNT+HLQEIA   GIPSY IDS  RIGPGN+I +K +H      ENWLP+  ITIGITSGASTPDK VEEVL K+F ++
Sbjct:  193 SFAGTYLIVLNLEEARYVCDYILHG------GDRAAFMAKFAKACSPGFDPDRDLVRVGIANQTTMLKGETEQIGKLFERTMIQKYGPDRLNEHFMSFNTICDATQERQDAMLSLVKEPLDLMVVIGGYNSSNTTHLQEIAIEHGIPSYHIDSADRIGPGNRIEHKPLHQNPTVAENWLPDRPITIGITSGASTPDKVVEEVLNKIFALR 396          
BLAST of CN185483 vs. ExPASy Swiss-Prot
Match: ISPH_CYAP4 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ispH PE=3 SV=1)

HSP 1 Score: 276.559 bits (706), Expect = 1.159e-73
Identity = 134/210 (63.81%), Postives = 168/210 (80.00%), Query Frame = -3
Query:  176 SFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEVRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIK 805
            S+A  Y+IV ++KEAEYVC+YIL G        +E FL KF+ A S  FDPD DLV+VGIANQTTMLKGETE+IGKL E+T+MRK+G + +N+HF+SFNTICDATQERQDAM+K+VE  +DL++V+GG+NSSNT+HLQEI+  R IPSY IDS  RIGPGN++ +K +H  L  KENWLP G I +GITSGASTPDK V +VL+K+F +K
Sbjct:  194 SYAATYLIVLDLKEAEYVCNYILNG------GDREEFLHKFRHAYSPDFDPDRDLVRVGIANQTTMLKGETEQIGKLFERTLMRKYGPDQINQHFLSFNTICDATQERQDAMFKLVEYPLDLMVVIGGFNSSNTTHLQEISIEREIPSYHIDSADRIGPGNRVEHKPLHRPLEIKENWLPEGPIVVGITSGASTPDKVVSDVLEKIFALK 397          
BLAST of CN185483 vs. ExPASy Swiss-Prot
Match: ISPH_ANAVT (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ispH PE=3 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 3.156e-71
Identity = 131/215 (60.93%), Postives = 170/215 (79.07%), Query Frame = -3
Query:  161 SFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEVRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKREEAL 805
            SFAGKY+IV N+KEA+YV DYIL G        +E FL+KF KA S GFDPD DL +VGIANQTTMLKGETE+IGKL E TM++K+G   +N+HF SFNTICDATQERQDAM ++V+E +DL++V+GG+NSSNT+ LQ+I++ RG+PSY ID  +RI   N I ++ ++GELV  ENWLP G+I +G+TSGASTPDK VE+V++K+F +K   A+
Sbjct:  193 SFAGKYLIVLNLKEAQYVADYILHGR------NREEFLQKFAKACSAGFDPDKDLERVGIANQTTMLKGETEQIGKLFEHTMLQKYGPVELNQHFQSFNTICDATQERQDAMLELVQENLDLMIVIGGFNSSNTTQLQQISQERGLPSYHIDVVERIKSVNSIEHRQLNGELVTTENWLPAGKIVVGVTSGASTPDKVVEDVIEKIFALKATTAV 401          
BLAST of CN185483 vs. ExPASy Swiss-Prot
Match: ISPH_ANASP (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Anabaena sp. (strain PCC 7120) GN=ispH PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 5.384e-71
Identity = 131/215 (60.93%), Postives = 170/215 (79.07%), Query Frame = -3
Query:  161 SFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEVRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKREEAL 805
            SFAGKY+IV N+KEA+YV DYIL G        +E FL+KF KA S GFDPD DL +VGIANQTTMLKGETE+IGKL E TM++K+G   +N+HF SFNTICDATQERQDAM ++V+E +DL++V+GG+NSSNT+ LQ+I++ RG+PSY ID  +RI   N I ++ ++GELV  ENWLP G+I +G+TSGASTPDK VE+V++K+F +K   A+
Sbjct:  193 SFAGKYLIVLNLKEAQYVADYILHG------GNREEFLQKFAKACSAGFDPDRDLERVGIANQTTMLKGETEQIGKLFEHTMLQKYGPVELNQHFQSFNTICDATQERQDAMLELVQENLDLMIVIGGFNSSNTTQLQQISQERGLPSYHIDVVERIKSINSIEHRQLNGELVTTENWLPAGKIVVGVTSGASTPDKVVEDVIEKIFALKATAAV 401          
BLAST of CN185483 vs. ExPASy Swiss-Prot
Match: ISPH_ACAM1 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Acaryochloris marina (strain MBIC 11017) GN=ispH PE=3 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 7.031e-71
Identity = 128/216 (59.26%), Postives = 170/216 (78.70%), Query Frame = -3
Query:  164 SFAGKYIIVKNMKEAEYVCDYILG-GELNGSSSTKEA-FLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEVRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKREEA 805
            SFAG Y+++ N++EAEYV DYIL  G+       + A F+ KF  A S GFDP+ DL +VGIANQTTMLKGETE+IGKL E+T+MRK+G   VNEHF+SFNTICDATQERQDA++++V+E +DL++V+GG+NSSNT+HLQEI+  + IPSY IDS  RIGPGN++ +K ++ +L   +NWLPNG + IG+TSGASTPDK V ++++K+F IK   A
Sbjct:  194 SFAGTYLVLLNLEEAEYVADYILNPGDTPSEREQRRADFMAKFANAHSPGFDPETDLERVGIANQTTMLKGETEQIGKLFERTVMRKYGPAQVNEHFLSFNTICDATQERQDAIFQLVDEPLDLMVVIGGFNSSNTTHLQEISIDKNIPSYHIDSVDRIGPGNRVEHKPLNADLTVTDNWLPNGPLAIGVTSGASTPDKVVSDIVEKIFSIKSASA 409          
BLAST of CN185483 vs. ExPASy Swiss-Prot
Match: ISPH_SYNP6 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ispH PE=3 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.566e-70
Identity = 125/211 (59.24%), Postives = 171/211 (81.04%), Query Frame = -3
Query:  173 SFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEVRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKR 805
            SFA  Y++V N+++A+YVCDYIL G        ++ F+ +F KA S GFDPD DL ++GIANQTTMLK ETE IGKL E+T+++K+G + +N+HF++FNTICDATQERQDAM+++VEE +DLI+V+GG+NSSNT+HLQEIA  R IPS+ ID+ +RIGPGN+I +K +H +L   E WLP G +TIGITSGASTPDK VE+V++++F+++R
Sbjct:  193 SFAETYLVVLNLEQAQYVCDYILNG------GDRDEFMTRFGKACSAGFDPDRDLERIGIANQTTMLKSETEAIGKLFERTLLKKYGPQALNDHFLAFNTICDATQERQDAMFQLVEEPLDLIVVIGGFNSSNTTHLQEIAIERQIPSFHIDAAERIGPGNRIEHKPLHTDLTTTEPWLPAGPLTIGITSGASTPDKVVEDVIERLFDLQR 397          
BLAST of CN185483 vs. ExPASy Swiss-Prot
Match: ISPH_SYNE7 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Synechococcus elongatus (strain PCC 7942) GN=ispH PE=3 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.566e-70
Identity = 125/211 (59.24%), Postives = 171/211 (81.04%), Query Frame = -3
Query:  173 SFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEVRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKR 805
            SFA  Y++V N+++A+YVCDYIL G        ++ F+ +F KA S GFDPD DL ++GIANQTTMLK ETE IGKL E+T+++K+G + +N+HF++FNTICDATQERQDAM+++VEE +DLI+V+GG+NSSNT+HLQEIA  R IPS+ ID+ +RIGPGN+I +K +H +L   E WLP G +TIGITSGASTPDK VE+V++++F+++R
Sbjct:  193 SFAETYLVVLNLEQAQYVCDYILNG------GDRDEFMTRFGKACSAGFDPDRDLERIGIANQTTMLKSETEAIGKLFERTLLKKYGPQALNDHFLAFNTICDATQERQDAMFQLVEEPLDLIVVIGGFNSSNTTHLQEIAIERQIPSFHIDAAERIGPGNRIEHKPLHTDLTTTEPWLPAGPLTIGITSGASTPDKVVEDVIERLFDLQR 397          
BLAST of CN185483 vs. ExPASy Swiss-Prot
Match: ISPH_CYAP7 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain PCC 7424) GN=ispH PE=3 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.326e-69
Identity = 132/215 (61.40%), Postives = 167/215 (77.67%), Query Frame = -3
Query:  161 SFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEVRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKREEAL 805
            SFAG Y++V NM++A+YVC+YIL G        K+ FL KFKKA S+GFDPD DL +VGIANQTTMLK ETEEIGKL E TM++K+G  ++N HF+SFNTICDATQERQDAM  +V+EK+DL++V+GG+NSSNT+HLQEI+   GI SY IDS  RI   N I +K +  +L  KENWLP+G+I +G+TSGASTPD  VE+VL+K+F IK   A+
Sbjct:  193 SFAGTYLVVLNMEQAKYVCNYILNG------GDKQEFLAKFKKAYSEGFDPDTDLERVGIANQTTMLKSETEEIGKLFEHTMLKKYGPLDLNNHFMSFNTICDATQERQDAMLDLVKEKLDLMVVIGGFNSSNTTHLQEISIHHGIVSYHIDSAARIDLNNHIEHKPLGKDLEVKENWLPDGKIVVGVTSGASTPDIVVEQVLQKIFAIKSAVAM 401          
BLAST of CN185483 vs. ExPASy Swiss-Prot
Match: ISPH_CYAP8 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Cyanothece sp. (strain PCC 8801) GN=ispH PE=3 SV=1)

HSP 1 Score: 260.766 bits (665), Expect = 6.581e-69
Identity = 131/213 (61.50%), Postives = 162/213 (76.06%), Query Frame = -3
Query:  167 SFAGKYIIVKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSKGFDPDVDLVKVGIANQTTMLKGETEEIGKLVEKTMMRKFGVENVNEHFISFNTICDATQERQDAMYKMVEEKVDLILVVGGWNSSNTSHLQEIAEVRGIPSYWIDSEKRIGPGNKIAYKLMHGELVEKENWLPNGQITIGITSGASTPDKAVEEVLKKVFEIKREE 805
            SFAG Y++V N+++A YVCDYIL G        KE FL KFK A S+GFDPD DL KVGIANQTTMLK ETE+IGKL E TM++K+G   +N+HF+SFNTICDATQERQDAM ++V+EK+DL++V+GG+NSSNT+HLQEI   +GI SY ID+  RI P N I +K +  +L  KENWLP G I +GITSGASTPD  VE V++K+F  K  E
Sbjct:  193 SFAGTYLVVLNLEQATYVCDYILKG------GNKEEFLAKFKNAYSEGFDPDTDLEKVGIANQTTMLKSETEQIGKLFEGTMLKKYGPAVINDHFMSFNTICDATQERQDAMLELVKEKLDLMVVIGGFNSSNTTHLQEIPIYQGITSYHIDNATRIKPNNCIEHKPLGKDLEIKENWLPEGSIVVGITSGASTPDIIVEAVIEKIFSAKELE 399          
The following BLAST results are available for this feature:
BLAST of CN185483 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
ISPH_CYAA51.048e-7462.794-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_THEEB3.050e-7465.714-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CYAP41.159e-7363.814-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_ANAVT3.156e-7160.934-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_ANASP5.384e-7160.934-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_ACAM17.031e-7159.264-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNP61.566e-7059.244-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_SYNE71.566e-7059.244-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CYAP71.326e-6961.404-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_CYAP86.581e-6961.504-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001G14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001G14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185483 ID=CN185483; Name=CN185483; organism=Citrus sinensis; type=EST; length=807bp
CCCCTTTTTTTTTTTTACAAAAATATAAATTTCAGATTAGATGGGCACTA
ATAAACTATTCGACAGAGGGCTGTGTTTATAATTTTACAATATCTAGTGA
TACAATCACATCGAAATTTATTGATAATGTGTATGTTTGGACCTCAGTTT
ACGCTAATTGCAAGGCTTCTTCACGCTTGATCTCGAATACCTTTTTAAGG
ACCTCTTCAACAGCCTTATCTGGGGTGGAGGCACCGGATGTTATACCGAT
TGTGATCTGGCCGTTCGGCAGCCAATTTTCTTTCTCCACCAGCTCACCAT
GCATCAATTTATATGCTATTTTGTTTCCGGGGCCTATTCTCTTCTCACTA
TCGATCCAGTATGAGGGAATTCCACGGACTTCTGCAATCTCTTGAAGGTG
TGAGGTATTGCTCGAGTTCCACCCACCAACAACCAAGATAAGATCGACCT
TTTCCTCAACCATCTTATACATTGCATCTTGTCGCTCTTGTGTAGCATCA
CAAATTGTGTTGAAGCTTATGAAGTGTTCATTGACATTTTCAACCCCAAA
TTTACGCATCATGGTCTTCTCGACTAGTTTTCCAATCTCTTCTGTTTCAC
CCTTGAGCATTGTAGTTTGGTTTGCAATGCCAACTTTTACCAGGTCAACA
TCTGGATCAAACCCTTTTGAAACAGCTTTCTTGAATTTCTCAAGGAATGC
TTCTTTTGTTGAGCTAGATCCATTAAGTTCACCCCCAAGAATGTAATCAC
ACACGTACTCAGCCTCTTTCATATTCTTGACTATGATATACTTTCCTGCA
AACGATG
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