CN185481

Overview
NameCN185481
Unique NameCN185481
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185481 vs. ExPASy Swiss-Prot
Match: COG6_HUMAN (Conserved oligomeric Golgi complex subunit 6 OS=Homo sapiens GN=COG6 PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 3.170e-24
Identity = 62/174 (35.63%), Postives = 97/174 (55.75%), Query Frame = 1
Query:  115 QTLSTFYEENTPHARGTLRSTI*KRALSINLDFXXXXXXXXXXXXXVEEEVNSLAECCDRIEKALNSCNATTGFIIETTERLKGELDVNTRRQEIVSCFLRDYQLSNEEINALR---DEDLDESFFKALAHVQEIHANCKVLLMTHHQRAGLELMDMMAMYQEGANERLCGWVQ 627
            + LSTF+ EN+   R  LR  I +++L+IN +F             + E+V +++ CC  +   L +    T  +I  T +L+ E      R ++   FL  +QL+++E++ LR   +  + E FFKAL  V++IH + KVLL T+ Q AGLE+M+ MA+ QE A ERL  W Q
Sbjct:   58 KALSTFFVENSLRTRRNLRGDIERKSLAINEEFVSIFKEVKEELESISEDVQAMSNCCQDMTSRLQAAKEQTQDLIVKTTKLQSESQKLEIRAQVADAFLSKFQLTSDEMSLLRGTREGPITEDFFKALGRVKQIHNDVKVLLRTNQQTAGLEIMEQMALLQETAYERLYRWAQ 231          
BLAST of CN185481 vs. ExPASy Swiss-Prot
Match: COG6_BOVIN (Conserved oligomeric Golgi complex subunit 6 OS=Bos taurus GN=COG6 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.140e-24
Identity = 62/174 (35.63%), Postives = 97/174 (55.75%), Query Frame = 1
Query:  115 QTLSTFYEENTPHARGTLRSTI*KRALSINLDFXXXXXXXXXXXXXVEEEVNSLAECCDRIEKALNSCNATTGFIIETTERLKGELDVNTRRQEIVSCFLRDYQLSNEEINALR---DEDLDESFFKALAHVQEIHANCKVLLMTHHQRAGLELMDMMAMYQEGANERLCGWVQ 627
            + LSTF+ EN+   R  LR  I +R+L+IN +F             + E+V +++ CC  +   L +    T  +I  T +L+ E      R ++   FL  +QL+++E++ LR   +  + E FFKAL  V++IH + KVLL T+ Q AGLE+M+ MA+ QE + ERL  W Q
Sbjct:   58 KALSTFFVENSLRTRRNLRGDIERRSLAINEEFVSIFKEVKEELESIHEDVQAMSSCCQDMTSRLQAAKEQTQDLIVKTTKLQAESQRLEIRAQVADAFLSKFQLTSDEMSLLRGTREGPITEDFFKALGRVKQIHNDVKVLLRTNQQTAGLEIMEQMALLQETSYERLYRWAQ 231          
BLAST of CN185481 vs. ExPASy Swiss-Prot
Match: COG6_MOUSE (Conserved oligomeric Golgi complex subunit 6 OS=Mus musculus GN=Cog6 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 5.407e-24
Identity = 66/188 (35.11%), Postives = 101/188 (53.72%), Query Frame = 1
Query:   73 TRIKNRNSRSAGFAQTLSTFYEENTPHARGTLRSTI*KRALSINLDFXXXXXXXXXXXXXVEEEVNSLAECCDRIEKALNSCNATTGFIIETTERLKGELDVNTRRQEIVSCFLRDYQLSNEEINALRDE---DLDESFFKALAHVQEIHANCKVLLMTHHQRAGLELMDMMAMYQEGANERLCGWVQ 627
            TR++N         + LS F+ EN+   R  LR  I +R+L+IN +F             + E+V +++ CC  +   L +    T  +I  T +L+ E      R ++V  FL  +QL+++E++ LR      + E FFKAL  V++IH + KVLL T+ Q AGLE+M+ MA+ QE A ERL  W Q
Sbjct:   45 TRLENDKEMLEAL-KALSAFFVENSLRTRRNLRGDIERRSLAINEEFVNIFKDVKEELESINEDVQAMSSCCQDMTSRLQAAKEQTQDLIVKTTKLQAENQRLEIRAQVVDAFLAKFQLTSDEMSLLRGTRGGPVTEDFFKALGRVKQIHNDVKVLLRTNQQTAGLEIMEQMALLQETAYERLYRWAQ 231          
BLAST of CN185481 vs. ExPASy Swiss-Prot
Match: COG6_RAT (Conserved oligomeric Golgi complex subunit 6 OS=Rattus norvegicus GN=Cog6 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.055e-23
Identity = 65/188 (34.57%), Postives = 99/188 (52.66%), Query Frame = 1
Query:   73 TRIKNRNSRSAGFAQTLSTFYEENTPHARGTLRSTI*KRALSINLDFXXXXXXXXXXXXXVEEEVNSLAECCDRIEKALNSCNATTGFIIETTERLKGELDVNTRRQEIVSCFLRDYQLSNEEINALRDE---DLDESFFKALAHVQEIHANCKVLLMTHHQRAGLELMDMMAMYQEGANERLCGWVQ 627
            TR++N         + LS F+ EN+   R  LR  I +R+L+IN +F             + E+V +++ CC  +   L +    T  +I  T +L+ E      R ++   FL  +QL+++E+  LR      + E FFKAL  V++IH + KVLL T+ Q AGLE+M+ MA+ QE A ERL  W Q
Sbjct:   45 TRLENDKEMLEAL-KALSAFFVENSLRTRRNLRGDIERRSLAINEEFVSIFKDVKEELESINEDVQAMSSCCQDMTSRLQAAKEQTQDLIVKTTKLQAENQRLEIRAQVADAFLSKFQLTSDEMTLLRGTRGGPVTEDFFKALGRVKQIHNDVKVLLRTNQQTAGLEIMEQMALLQETAYERLYRWAQ 231          
BLAST of CN185481 vs. ExPASy Swiss-Prot
Match: COG6_DROME (Conserved oligomeric Golgi complex subunit 6 OS=Drosophila melanogaster GN=CG1968 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.080e-20
Identity = 58/173 (33.53%), Postives = 92/173 (53.18%), Query Frame = 1
Query:  121 LSTFYEENTPHARGTLRSTI*KRALSINLDFXXXXXXXXXXXXXVEEEVNSLAECCDRIEKALNSCNATTGFIIETTERLKGELDVNTRRQEIVSCFLRDYQLSNEE----INALRDEDLDESFFKALAHVQEIHANCKVLLMTHHQRAGLELMDMMAMYQEGANERLCGWVQ 627
            LSTF+ ENT   R  LRS I  R++ IN +F             V E+++++A   + ++  L +  A T  +I+ T  ++ E D     ++I   FL  +QLS  E      A +D  +   FF+ L  VQ IHA+C++L+   +Q A +++M+ M ++QEGA ERL  W Q
Sbjct:   39 LSTFFTENTLQNRRNLRSQIEHRSVGINENFLKAFRQVKLSLDAVCEDLDTMATSVETMKSDLETSKALTKDLIKQTNTMQRERDRLEVHKQIAQAFLARFQLSGAEHQLLYGAAKDAPIVADFFRVLDRVQSIHADCRLLMQCGYQTAAIDIMEEMTLHQEGALERLYRWTQ 211          
BLAST of CN185481 vs. ExPASy Swiss-Prot
Match: COG6_ASPOR (Conserved oligomeric Golgi complex subunit 6 OS=Aspergillus oryzae GN=cog6 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.743e-14
Identity = 44/173 (25.43%), Postives = 83/173 (47.98%), Query Frame = 1
Query:  115 QTLSTFYEENTPHARGTLRSTI*KRALSINLDFXXXXXXXXXXXXXVEEEVNSLAECCDRIEKALNSCNATTGFIIETTERLKGELDVNTRRQEIVSCFLRDYQLSNEEINALR--DEDLDESFFKALAHVQEIHANCKVLLMTHHQRAGLELMDMMAMYQEGANERLCGWVQ 627
            +TLS     NTP  R  LR  + K  +  N +              +   + SL + CD + K ++     T  ++E    L  +      +Q+++  F + + + +++I  L   ++ +++ FF+ LA V+++H +C+ LL   +QR GLELMD  +     A ++L  W+Q
Sbjct:  124 ETLSLRDIHNTPEVRRQLRLDVQKEVVDCNAEIVRDFGKVAEQLKRIGTVITSLNQTCDEMRKHISLARQDTAPVLEEASTLMNQKKEAETKQQLLDAFTKHFVVPDDDILVLTSLEDPINDQFFEVLARVKQVHRDCEALLGGENQRLGLELMDKSSRNLNSAYQKLYRWIQ 296          
BLAST of CN185481 vs. ExPASy Swiss-Prot
Match: COG6_ASPCL (Conserved oligomeric Golgi complex subunit 6 OS=Aspergillus clavatus GN=cog6 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.928e-13
Identity = 44/173 (25.43%), Postives = 82/173 (47.40%), Query Frame = 1
Query:  115 QTLSTFYEENTPHARGTLRSTI*KRALSINLDFXXXXXXXXXXXXXVEEEVNSLAECCDRIEKALNSCNATTGFIIETTERLKGELDVNTRRQEIVSCFLRDYQLSNEEINALR--DEDLDESFFKALAHVQEIHANCKVLLMTHHQRAGLELMDMMAMYQEGANERLCGWVQ 627
            +TLS     NT   R  LR  + K  +  N +              +   ++SL + C+ + + +      T  ++E    L  +   +  +Q+++  F + + +  EE+  L   +E +D+ FF  LA V+++H +C+VLL   +QR GLELM+  +     A ++L  W+Q
Sbjct:   58 ETLSLRGIHNTAETRRQLRLDVQKEVVDSNAEIVRDFGTVAEQLQRIGAVISSLNQTCEEMRQHIFLAKQDTTPVLEEASALVSQKQESETKQQLLDAFAKHFIIPEEELPVLTSLEEPIDDHFFNVLARVKQVHHDCEVLLEGENQRLGLELMEKSSRTLNSAYQKLFRWIQ 230          
BLAST of CN185481 vs. ExPASy Swiss-Prot
Match: COG6_ASPFU (Conserved oligomeric Golgi complex subunit 6 OS=Aspergillus fumigatus GN=cog6 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.518e-13
Identity = 43/173 (24.86%), Postives = 83/173 (47.98%), Query Frame = 1
Query:  115 QTLSTFYEENTPHARGTLRSTI*KRALSINLDFXXXXXXXXXXXXXVEEEVNSLAECCDRIEKALNSCNATTGFIIETTERLKGELDVNTRRQEIVSCFLRDYQLSNEEINALR--DEDLDESFFKALAHVQEIHANCKVLLMTHHQRAGLELMDMMAMYQEGANERLCGWVQ 627
            +TLS     NT   R  LR  + K  +  N +              +   ++SL + C+ + + +      T  +IE    L  +   +  +Q+++  F++ + +S +++  L   +E +D+ FF  L  V+++H +C+VLL   +QR GLELM+  +     A ++L  W+Q
Sbjct:   58 ETLSLRGVHNTAETRRQLRLDVQKEVVECNAEIVRDFGKVAEQLQRIGTVISSLNQTCEEMRQHIVRAKQDTAPVIEEASALMNQKKESETKQQLLDAFVKHFIVSEDDLLVLTSAEEPIDDRFFNVLDRVKQVHHDCEVLLGGENQRLGLELMEKSSRNLNSAYQKLFRWIQ 230          
BLAST of CN185481 vs. ExPASy Swiss-Prot
Match: COG6_DICDI (Conserved oligomeric Golgi complex subunit 6 OS=Dictyostelium discoideum GN=cog6 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.288e-13
Identity = 46/172 (26.74%), Postives = 82/172 (47.67%), Query Frame = 1
Query:  115 QTLSTFYEENTPHARGTLRSTI*KRALSINLDFXXXXXXXXXXXXXVEEEVNSLAECCDRIEKALNSCNATTGFIIETTERLKGELDVNTRRQEIVSCFLRDYQLSNEEINALRDEDLDESFFKALAHVQEIHANCKV-LLMTHHQRAGLELMDMMAMYQEGANERLCGWVQ 627
            + LSTFY  N+  AR  LR+ I KR L IN+ F             +  +   +   C  I   LNS N  +  +++    L   L     ++  +  F + ++L+ +E  +L  +++D SF++ L  + EI   CK  LL   +Q+   E+++++  +Q+ A  RL  W +
Sbjct:   27 EELSTFYTSNSIGARRNLRNEIEKRYLDINIQFLDQFDQLNKNINELVLDFEGIKNSCVDICDHLNSTNRVSSELLKNAHELSCGLKEIKEKENTLQQFFKKFKLTPQEEQSLVKKEIDSSFYQTLDRLSEIQNECKKNLLSNQYQKPTYEILEIITKHQDNAYRRLYQWTK 198          
BLAST of CN185481 vs. ExPASy Swiss-Prot
Match: COG6_PHANO (Conserved oligomeric Golgi complex subunit 6 OS=Phaeosphaeria nodorum GN=COG6 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.294e-13
Identity = 46/173 (26.59%), Postives = 80/173 (46.24%), Query Frame = 1
Query:  115 QTLSTFYEENTPHARGTLRSTI*KRALSINLDFXXXXXXXXXXXXXVEEEVNSLAECCDRIEKALNSCNATTGFIIETTERLKGELDVNTRRQEIVSCFLRDYQLSNEEINALRD--EDLDESFFKALAHVQEIHANCKVLLMTHHQRAGLELMDMMAMYQEGANERLCGWVQ 627
            +TL T    NT   R  +R  + K  +  N +              +   ++SL   C  +   + + N  TG ++E    L  +      +Q+I+  F   + +S+EE   L    E ++E FF+ L  V++IH +C+VLL T  QR GLE+++  +     A ++L  W+Q
Sbjct:   57 ETLDTRGVRNTAETRRQIRLDVQKEVIECNGEIVKDFGQVAEQLKRIGTAISSLNSYCADMRSHIAAANKETGPVLEEATGLINQRKQVESKQQILQAFNSHFLISDEEATVLTSTAEPVNEEFFQVLTRVKKIHHDCQVLLGTEDQRLGLEILEQSSKQLNAAFQKLYRWIQ 229          
The following BLAST results are available for this feature:
BLAST of CN185481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
COG6_HUMAN3.170e-2435.63Conserved oligomeric Golgi complex subunit 6 OS=Ho... [more]
COG6_BOVIN4.140e-2435.63Conserved oligomeric Golgi complex subunit 6 OS=Bo... [more]
COG6_MOUSE5.407e-2435.11Conserved oligomeric Golgi complex subunit 6 OS=Mu... [more]
COG6_RAT2.055e-2334.57Conserved oligomeric Golgi complex subunit 6 OS=Ra... [more]
COG6_DROME8.080e-2033.53Conserved oligomeric Golgi complex subunit 6 OS=Dr... [more]
COG6_ASPOR1.743e-1425.43Conserved oligomeric Golgi complex subunit 6 OS=As... [more]
COG6_ASPCL1.928e-1325.43Conserved oligomeric Golgi complex subunit 6 OS=As... [more]
COG6_ASPFU2.518e-1324.86Conserved oligomeric Golgi complex subunit 6 OS=As... [more]
COG6_DICDI3.288e-1326.74Conserved oligomeric Golgi complex subunit 6 OS=Di... [more]
COG6_PHANO4.294e-1326.59Conserved oligomeric Golgi complex subunit 6 OS=Ph... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001G13_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001G13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185481 ID=CN185481; Name=CN185481; organism=Citrus sinensis; type=EST; length=628bp
GTTTTTTCAGTCTGTTCGGGGAGAATCGGAAATGGCATTACCTCCAGGGC
TTTCTTGGAAGCTGAAGAAAGTACTAGAATCAAGAACAGAAACTCCCGAT
CTGCTGGCTTCGCTCAAACGCTTTCTACTTTCTACGAAGAAAACACTCCA
CACGCGCGTGGCACCCTCAGATCCACCATCTAAAAGCGTGCACTCTCCAT
CAATCTCGATTTCCTCCAAGCCTCAAGCGCCGCTCAACAAGCTCTGGATC
AAGTTGAAGAGGAGGTTAATTCGCTCGCTGAATGCTGTGACAGGATTGAG
AAGGCATTGAATAGTTGTAATGCTACCACTGGTTTTATTATCGAAACCAC
AGAGAGGCTCAAGGGGGAGCTTGATGTGAATACGCGGAGACAAGAGATTG
TTTCATGCTTTCTTCGTGATTATCAGCTCTCTAATGAAGAGATAAATGCA
CTGAGAGACGAAGACCTAGATGAAAGTTTCTTTAAGGCGCTTGCACATGT
TCAAGAGATTCACGCCAACTGCAAAGTTCTGTTAATGACACATCACCAGC
GTGCAGGTTTGGAGCTGATGGATATGATGGCTATGTACCAAGAAGGAGCC
AATGAGCGCCTTTGCGGGTGGGTTCAGG
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