CN185474

Overview
NameCN185474
Unique NameCN185474
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1077 contig Csv1_Contig1077:192..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL171_ARATH (60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 9.862e-60
Identity = 96/118 (81.36%), Postives = 102/118 (86.44%), Query Frame = -1
Query:  215 RAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXETQLATSKSKK 568
            +AIPFTRFC GVGRTAQAKNRH NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIEL LS          ETQLA +KSKK
Sbjct:   56 QAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKK 172          

HSP 2 Score: 62.3882 bits (150), Expect = 9.862e-60
Identity = 29/31 (93.55%), Postives = 30/31 (96.77%), Query Frame = -3
Query:  567 FKNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 659
            FKNTRETAHAIRKLPL KAKRYLEDV+AHKQ
Sbjct:   26 FKNTRETAHAIRKLPLNKAKRYLEDVIAHKQ 56          
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL172_ARATH (60S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 1.286e-59
Identity = 96/118 (81.36%), Postives = 102/118 (86.44%), Query Frame = -1
Query:  215 RAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXETQLATSKSKK 568
            +AIPFTRFC GVGRTAQAKNRH NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIEL LS          ETQLA +KSKK
Sbjct:   56 QAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKK 172          

HSP 2 Score: 62.003 bits (149), Expect = 1.286e-59
Identity = 29/31 (93.55%), Postives = 30/31 (96.77%), Query Frame = -3
Query:  567 FKNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 659
            FKNTRETAHAIRKLPL KAKRYLEDV+AHKQ
Sbjct:   26 FKNTRETAHAIRKLPLIKAKRYLEDVIAHKQ 56          
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL17_MAIZE (60S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.169e-57
Identity = 87/97 (89.69%), Postives = 93/97 (95.88%), Query Frame = -1
Query:  278 RAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 568
            +AIPF R+CGGVGRTAQAK+RH NGQGRWPVKSA+FILDLLKNAESNA+VKGLDVD LY+SHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL LS
Sbjct:   56 QAIPFRRYCGGVGRTAQAKSRHSNGQGRWPVKSARFILDLLKNAESNADVKGLDVDNLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILS 152          

HSP 2 Score: 60.077 bits (144), Expect = 1.169e-57
Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = -3
Query:  567 FKNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 659
            FKNTRETA A+RKLPLTKAKRYLEDV+AHKQ
Sbjct:   26 FKNTRETAFALRKLPLTKAKRYLEDVIAHKQ 56          
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL171_HORVU (60S ribosomal protein L17-1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 9.765e-57
Identity = 87/97 (89.69%), Postives = 91/97 (93.81%), Query Frame = -1
Query:  278 RAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 568
            +AIPF R+C GVGRTAQ KNR PNGQGRWP KSAKF+LDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMS+PCHIEL LS
Sbjct:   56 QAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILS 152          

HSP 2 Score: 57.7658 bits (138), Expect = 9.765e-57
Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = -3
Query:  567 FKNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 659
            FKNTRETA A+RK+PL KAKRYLEDV+AHKQ
Sbjct:   26 FKNTRETAFALRKMPLNKAKRYLEDVLAHKQ 56          
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL172_HORVU (60S ribosomal protein L17-2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 5.214e-55
Identity = 85/97 (87.63%), Postives = 90/97 (92.78%), Query Frame = -1
Query:  278 RAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 568
            +AIPF R+C GVGRTAQ KNR PNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD LYISHIQVNQAQKQRRRTYRAHGRINPYMS+PCHIEL LS
Sbjct:   56 QAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDNLYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILS 152          

HSP 2 Score: 55.8398 bits (133), Expect = 5.214e-55
Identity = 25/31 (80.65%), Postives = 29/31 (93.55%), Query Frame = -3
Query:  567 FKNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 659
            FKNTRETA A+R++PL KAKRYLEDV+AHKQ
Sbjct:   26 FKNTRETAFALRRMPLGKAKRYLEDVLAHKQ 56          
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL17_PODCA (60S ribosomal protein L17 OS=Podocoryne carnea GN=RPL17 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.373e-42
Identity = 73/95 (76.84%), Postives = 81/95 (85.26%), Query Frame = -1
Query:  278 IPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 562
            IPF RFCGGVGR AQAK    + QGRWPVKSA+F+L LLKNAESNA+VKGLDVD+L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ +S
Sbjct:   58 IPFRRFCGGVGRKAQAK-AFKHTQGRWPVKSAEFLLGLLKNAESNADVKGLDVDSLVIDHIQVNRAPYMRRRTYRAHGRINPYMSSPCHIEMIVS 151          

HSP 2 Score: 45.0542 bits (105), Expect = 2.373e-42
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = -3
Query:  567 FKNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 659
            FKNTRETA AI+K+ + KA RYL+DV+A KQ
Sbjct:   26 FKNTRETAQAIKKMHIRKAYRYLKDVIAKKQ 56          
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL17_SUBDO (60S ribosomal protein L17 OS=Suberites domuncula GN=RPL17 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.129e-38
Identity = 69/95 (72.63%), Postives = 78/95 (82.11%), Query Frame = -1
Query:  281 IPFTRFCGGVGRTAQAKN-RHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 562
            IPF RF GGVGR AQAKN + P  QGRWP KSA+F++ LL+NAESNAEVK L+ DAL I HIQVN+A   RRRTYRAHGRINPYM+SPCHIE+ L
Sbjct:   58 IPFRRFSGGVGRKAQAKNFKTPGSQGRWPKKSAQFLIQLLRNAESNAEVKMLNTDALVIDHIQVNRAAHLRRRTYRAHGRINPYMTSPCHIEMFL 152          

HSP 2 Score: 40.817 bits (94), Expect = 1.129e-38
Identity = 20/31 (64.52%), Postives = 23/31 (74.19%), Query Frame = -3
Query:  567 FKNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 659
            FKNTRETA AI+ + L KA RYL DV+  KQ
Sbjct:   26 FKNTRETAQAIKGMHLKKALRYLNDVIEKKQ 56          
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL17_HUMAN (60S ribosomal protein L17 OS=Homo sapiens GN=RPL17 PE=1 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 3.256e-38
Identity = 69/97 (71.13%), Postives = 80/97 (82.47%), Query Frame = -1
Query:  278 RAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 568
            + +PF R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   56 QCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          

HSP 2 Score: 39.2762 bits (90), Expect = 3.256e-38
Identity = 18/31 (58.06%), Postives = 23/31 (74.19%), Query Frame = -3
Query:  567 FKNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 659
            FKNTRETA AI+ + + KA +YL+DV   KQ
Sbjct:   26 FKNTRETAQAIKGMHIRKATKYLKDVTLQKQ 56          
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL17_FELCA (60S ribosomal protein L17 OS=Felis catus GN=RPL17 PE=2 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 3.256e-38
Identity = 69/97 (71.13%), Postives = 80/97 (82.47%), Query Frame = -1
Query:  278 RAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 568
            + +PF R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   56 QCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          

HSP 2 Score: 39.2762 bits (90), Expect = 3.256e-38
Identity = 18/31 (58.06%), Postives = 23/31 (74.19%), Query Frame = -3
Query:  567 FKNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 659
            FKNTRETA AI+ + + KA +YL+DV   KQ
Sbjct:   26 FKNTRETAQAIKGMHIRKATKYLKDVTLQKQ 56          
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL17_RAT (60S ribosomal protein L17 OS=Rattus norvegicus GN=Rpl17 PE=2 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 4.242e-38
Identity = 69/97 (71.13%), Postives = 80/97 (82.47%), Query Frame = -1
Query:  278 RAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 568
            + +PF R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   56 QCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          

HSP 2 Score: 38.891 bits (89), Expect = 4.242e-38
Identity = 18/31 (58.06%), Postives = 23/31 (74.19%), Query Frame = -3
Query:  567 FKNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 659
            FKNTRETA AI+ + + KA +YL+DV   KQ
Sbjct:   26 FKNTRETAQAIKGMHIRKATKYLKDVTLKKQ 56          
The following BLAST results are available for this feature:
BLAST of CN185474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
RL171_ARATH9.862e-6081.3660S ribosomal protein L17-1 OS=Arabidopsis thalian... [more]
RL172_ARATH1.286e-5981.3660S ribosomal protein L17-2 OS=Arabidopsis thalian... [more]
RL17_MAIZE1.169e-5789.6960S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=... [more]
RL171_HORVU9.765e-5789.6960S ribosomal protein L17-1 OS=Hordeum vulgare PE=... [more]
RL172_HORVU5.214e-5587.6360S ribosomal protein L17-2 OS=Hordeum vulgare PE=... [more]
RL17_PODCA2.373e-4276.8460S ribosomal protein L17 OS=Podocoryne carnea GN=... [more]
RL17_SUBDO1.129e-3872.6360S ribosomal protein L17 OS=Suberites domuncula G... [more]
RL17_HUMAN3.256e-3871.1360S ribosomal protein L17 OS=Homo sapiens GN=RPL17... [more]
RL17_FELCA3.256e-3871.1360S ribosomal protein L17 OS=Felis catus GN=RPL17 ... [more]
RL17_RAT4.242e-3871.1360S ribosomal protein L17 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001G08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185474 ID=CN185474; Name=CN185474; organism=Citrus sinensis; type=EST; length=661bp
AAAAGTCTTTAATTTTCATAAAGCTCCAACAGTATGACTGAGGATTCTAA
CAAAACAGTAAACTGGACGTAATATGAAATAAACAAAATATGATGTCTGA
TTTGACTAAATAACATCTCAGTCACTATTAAAGGTAAAAAAACTCACTTC
ATCAAGAACACAAAATAGAAAATCAGGGCACTCTCCAATTGCTATGCTAA
ACCTCAGACAATTACTTCTTTGATTTGCTAGTTGCCAACTGGGTCTCAGG
CTCTTTCTTTACTGGCTCTTCCTTTTCAGATAAGGTCAACTCAATATGGC
AGGGAGAGGACATGTAAGGATTAATTCTTCCATGAGCACGGTATGTGCGG
CGCCTTTGCTTTTGTGCCTGGTTGACTTGGATGTGAGAAATGTAGAGTGC
ATCAACATCTAAACCTTTCACCTCAGCATTACTCTCAGCATTCTTGAGCA
AGTCAAGAATGAACTTTGCTGATTTGACAGGCCATCGTCCCTGTCCATTT
GGATGCCTATTCTTTGCCTGAGCAGTACGTCCAACACCACCGCAGAATCG
TGTGAAGGGAATGGCCCTGTTTATGGGCCATAACATCCTCCAAATACCTC
TTAGCCTTCGTCAAAGGCAATTTCCTGATGGCATGGGCAGTTTCTCTCGT
GTTCTTAAAAT
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