CN185474
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL171_ARATH (60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=1 SV=1) HSP 1 Score: 189.504 bits (480), Expect = 9.862e-60 Identity = 96/118 (81.36%), Postives = 102/118 (86.44%), Query Frame = -1 Query: 215 RAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXETQLATSKSKK 568 +AIPFTRFC GVGRTAQAKNRH NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIEL LS ETQLA +KSKK Sbjct: 56 QAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKK 172 HSP 2 Score: 62.3882 bits (150), Expect = 9.862e-60 Identity = 29/31 (93.55%), Postives = 30/31 (96.77%), Query Frame = -3 Query: 567 FKNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 659 FKNTRETAHAIRKLPL KAKRYLEDV+AHKQ Sbjct: 26 FKNTRETAHAIRKLPLNKAKRYLEDVIAHKQ 56
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL172_ARATH (60S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2) HSP 1 Score: 189.504 bits (480), Expect = 1.286e-59 Identity = 96/118 (81.36%), Postives = 102/118 (86.44%), Query Frame = -1 Query: 215 RAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXETQLATSKSKK 568 +AIPFTRFC GVGRTAQAKNRH NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIEL LS ETQLA +KSKK Sbjct: 56 QAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKK 172 HSP 2 Score: 62.003 bits (149), Expect = 1.286e-59 Identity = 29/31 (93.55%), Postives = 30/31 (96.77%), Query Frame = -3 Query: 567 FKNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 659 FKNTRETAHAIRKLPL KAKRYLEDV+AHKQ Sbjct: 26 FKNTRETAHAIRKLPLIKAKRYLEDVIAHKQ 56
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL17_MAIZE (60S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=2 SV=1) HSP 1 Score: 184.882 bits (468), Expect = 1.169e-57 Identity = 87/97 (89.69%), Postives = 93/97 (95.88%), Query Frame = -1 Query: 278 RAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 568 +AIPF R+CGGVGRTAQAK+RH NGQGRWPVKSA+FILDLLKNAESNA+VKGLDVD LY+SHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL LS Sbjct: 56 QAIPFRRYCGGVGRTAQAKSRHSNGQGRWPVKSARFILDLLKNAESNADVKGLDVDNLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILS 152 HSP 2 Score: 60.077 bits (144), Expect = 1.169e-57 Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = -3 Query: 567 FKNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 659 FKNTRETA A+RKLPLTKAKRYLEDV+AHKQ Sbjct: 26 FKNTRETAFALRKLPLTKAKRYLEDVIAHKQ 56
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL171_HORVU (60S ribosomal protein L17-1 OS=Hordeum vulgare PE=2 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 9.765e-57 Identity = 87/97 (89.69%), Postives = 91/97 (93.81%), Query Frame = -1 Query: 278 RAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 568 +AIPF R+C GVGRTAQ KNR PNGQGRWP KSAKF+LDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMS+PCHIEL LS Sbjct: 56 QAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILS 152 HSP 2 Score: 57.7658 bits (138), Expect = 9.765e-57 Identity = 26/31 (83.87%), Postives = 29/31 (93.55%), Query Frame = -3 Query: 567 FKNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 659 FKNTRETA A+RK+PL KAKRYLEDV+AHKQ Sbjct: 26 FKNTRETAFALRKMPLNKAKRYLEDVLAHKQ 56
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL172_HORVU (60S ribosomal protein L17-2 OS=Hordeum vulgare PE=2 SV=1) HSP 1 Score: 180.259 bits (456), Expect = 5.214e-55 Identity = 85/97 (87.63%), Postives = 90/97 (92.78%), Query Frame = -1 Query: 278 RAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 568 +AIPF R+C GVGRTAQ KNR PNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD LYISHIQVNQAQKQRRRTYRAHGRINPYMS+PCHIEL LS Sbjct: 56 QAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDNLYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILS 152 HSP 2 Score: 55.8398 bits (133), Expect = 5.214e-55 Identity = 25/31 (80.65%), Postives = 29/31 (93.55%), Query Frame = -3 Query: 567 FKNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 659 FKNTRETA A+R++PL KAKRYLEDV+AHKQ Sbjct: 26 FKNTRETAFALRRMPLGKAKRYLEDVLAHKQ 56
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL17_PODCA (60S ribosomal protein L17 OS=Podocoryne carnea GN=RPL17 PE=2 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 2.373e-42 Identity = 73/95 (76.84%), Postives = 81/95 (85.26%), Query Frame = -1 Query: 278 IPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 562 IPF RFCGGVGR AQAK + QGRWPVKSA+F+L LLKNAESNA+VKGLDVD+L I HIQVN+A RRRTYRAHGRINPYMSSPCHIE+ +S Sbjct: 58 IPFRRFCGGVGRKAQAK-AFKHTQGRWPVKSAEFLLGLLKNAESNADVKGLDVDSLVIDHIQVNRAPYMRRRTYRAHGRINPYMSSPCHIEMIVS 151 HSP 2 Score: 45.0542 bits (105), Expect = 2.373e-42 Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = -3 Query: 567 FKNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 659 FKNTRETA AI+K+ + KA RYL+DV+A KQ Sbjct: 26 FKNTRETAQAIKKMHIRKAYRYLKDVIAKKQ 56
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL17_SUBDO (60S ribosomal protein L17 OS=Suberites domuncula GN=RPL17 PE=2 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 1.129e-38 Identity = 69/95 (72.63%), Postives = 78/95 (82.11%), Query Frame = -1 Query: 281 IPFTRFCGGVGRTAQAKN-RHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 562 IPF RF GGVGR AQAKN + P QGRWP KSA+F++ LL+NAESNAEVK L+ DAL I HIQVN+A RRRTYRAHGRINPYM+SPCHIE+ L Sbjct: 58 IPFRRFSGGVGRKAQAKNFKTPGSQGRWPKKSAQFLIQLLRNAESNAEVKMLNTDALVIDHIQVNRAAHLRRRTYRAHGRINPYMTSPCHIEMFL 152 HSP 2 Score: 40.817 bits (94), Expect = 1.129e-38 Identity = 20/31 (64.52%), Postives = 23/31 (74.19%), Query Frame = -3 Query: 567 FKNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 659 FKNTRETA AI+ + L KA RYL DV+ KQ Sbjct: 26 FKNTRETAQAIKGMHLKKALRYLNDVIEKKQ 56
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL17_HUMAN (60S ribosomal protein L17 OS=Homo sapiens GN=RPL17 PE=1 SV=3) HSP 1 Score: 140.584 bits (353), Expect = 3.256e-38 Identity = 69/97 (71.13%), Postives = 80/97 (82.47%), Query Frame = -1 Query: 278 RAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 568 + +PF R+ GGVGR AQAK QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+ Sbjct: 56 QCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151 HSP 2 Score: 39.2762 bits (90), Expect = 3.256e-38 Identity = 18/31 (58.06%), Postives = 23/31 (74.19%), Query Frame = -3 Query: 567 FKNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 659 FKNTRETA AI+ + + KA +YL+DV KQ Sbjct: 26 FKNTRETAQAIKGMHIRKATKYLKDVTLQKQ 56
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL17_FELCA (60S ribosomal protein L17 OS=Felis catus GN=RPL17 PE=2 SV=3) HSP 1 Score: 140.584 bits (353), Expect = 3.256e-38 Identity = 69/97 (71.13%), Postives = 80/97 (82.47%), Query Frame = -1 Query: 278 RAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 568 + +PF R+ GGVGR AQAK QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+ Sbjct: 56 QCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151 HSP 2 Score: 39.2762 bits (90), Expect = 3.256e-38 Identity = 18/31 (58.06%), Postives = 23/31 (74.19%), Query Frame = -3 Query: 567 FKNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 659 FKNTRETA AI+ + + KA +YL+DV KQ Sbjct: 26 FKNTRETAQAIKGMHIRKATKYLKDVTLQKQ 56
BLAST of CN185474 vs. ExPASy Swiss-Prot
Match: RL17_RAT (60S ribosomal protein L17 OS=Rattus norvegicus GN=Rpl17 PE=2 SV=3) HSP 1 Score: 140.584 bits (353), Expect = 4.242e-38 Identity = 69/97 (71.13%), Postives = 80/97 (82.47%), Query Frame = -1 Query: 278 RAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 568 + +PF R+ GGVGR AQAK QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+ Sbjct: 56 QCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151 HSP 2 Score: 38.891 bits (89), Expect = 4.242e-38 Identity = 18/31 (58.06%), Postives = 23/31 (74.19%), Query Frame = -3 Query: 567 FKNTRETAHAIRKLPLTKAKRYLEDVMAHKQ 659 FKNTRETA AI+ + + KA +YL+DV KQ Sbjct: 26 FKNTRETAQAIKGMHIRKATKYLKDVTLKKQ 56 The following BLAST results are available for this feature:
BLAST of CN185474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 50
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185474 ID=CN185474; Name=CN185474; organism=Citrus sinensis; type=EST; length=661bpback to top |