CN185460

Overview
NameCN185460
Unique NameCN185460
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2484 contig Csv1_Contig2484:1..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185460 vs. ExPASy Swiss-Prot
Match: RN167_RAT (E3 ubiquitin-protein ligase RNF167 OS=Rattus norvegicus GN=Rnf167 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.506e-14
Identity = 33/76 (43.42%), Postives = 45/76 (59.21%), Query Frame = -1
Query:  168 PIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGATESSNSE 395
            P   ++KGD      E D C ICL EYE+GD++R+LPC H YH  CVD WL +    CP+C++ V +G  +    E
Sbjct:  217 PTHDYQKGD------EYDVCAICLDEYEDGDKLRILPCAHAYHSRCVDPWLTQTRKTCPICKQPVHRGPGDEEQEE 286          
BLAST of CN185460 vs. ExPASy Swiss-Prot
Match: RN167_MOUSE (E3 ubiquitin-protein ligase RNF167 OS=Mus musculus GN=Rnf167 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.885e-14
Identity = 33/76 (43.42%), Postives = 45/76 (59.21%), Query Frame = -1
Query:  168 PIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGATESSNSE 395
            P   ++KGD      E D C ICL EYE+GD++R+LPC H YH  CVD WL +    CP+C++ V +G  +    E
Sbjct:  217 PTHDYQKGD------EYDVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQPVHRGPGDEEQEE 286          
BLAST of CN185460 vs. ExPASy Swiss-Prot
Match: RNF13_RAT (RING finger protein 13 OS=Rattus norvegicus GN=Rnf13 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 35/74 (47.30%), Postives = 46/74 (62.16%), Query Frame = -1
Query:  180 PIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDV--RQGATES 395
            P+   KKGD      E D C ICL EYE+GD++R+LPC H YH  CVD WL +    CP+C++ V   QG ++S
Sbjct:  227 PVHKFKKGD------EYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSDS 294          
BLAST of CN185460 vs. ExPASy Swiss-Prot
Match: RNF13_MOUSE (RING finger protein 13 OS=Mus musculus GN=Rnf13 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 35/74 (47.30%), Postives = 46/74 (62.16%), Query Frame = -1
Query:  180 PIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDV--RQGATES 395
            P+   KKGD      E D C ICL EYE+GD++R+LPC H YH  CVD WL +    CP+C++ V   QG ++S
Sbjct:  227 PVHKFKKGD------EYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSDS 294          
BLAST of CN185460 vs. ExPASy Swiss-Prot
Match: RN167_HUMAN (E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens GN=RNF167 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 32/76 (42.11%), Postives = 45/76 (59.21%), Query Frame = -1
Query:  168 PIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDVRQGATESSNSE 395
            P   ++KGD+       D C ICL EYE+GD++R+LPC H YH  CVD WL +    CP+C++ V +G  +    E
Sbjct:  217 PTHDYQKGDQY------DVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTQTRKTCPICKQPVHRGPGDEDQEE 286          
BLAST of CN185460 vs. ExPASy Swiss-Prot
Match: RNF13_PONAB (RING finger protein 13 OS=Pongo abelii GN=RNF13 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.712e-13
Identity = 35/74 (47.30%), Postives = 46/74 (62.16%), Query Frame = -1
Query:  180 PIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDV--RQGATES 395
            P+   KKGD      E D C ICL EYE+GD++R+LPC H YH  CVD WL +    CP+C++ V   QG ++S
Sbjct:  227 PVHKFKKGD------EYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSDS 294          
BLAST of CN185460 vs. ExPASy Swiss-Prot
Match: RNF13_HUMAN (RING finger protein 13 OS=Homo sapiens GN=RNF13 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.712e-13
Identity = 35/74 (47.30%), Postives = 46/74 (62.16%), Query Frame = -1
Query:  180 PIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDV--RQGATES 395
            P+   KKGD      E D C ICL EYE+GD++R+LPC H YH  CVD WL +    CP+C++ V   QG ++S
Sbjct:  227 PVHKFKKGD------EYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSDS 294          
BLAST of CN185460 vs. ExPASy Swiss-Prot
Match: RNF13_CHICK (RING finger protein 13 OS=Gallus gallus GN=RNF13 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.712e-13
Identity = 35/74 (47.30%), Postives = 46/74 (62.16%), Query Frame = -1
Query:  180 PIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDV--RQGATES 395
            P+   KKGD      E D C ICL EYE+GD++R+LPC H YH  CVD WL +    CP+C++ V   QG ++S
Sbjct:  227 PVHKFKKGD------EYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSDS 294          
BLAST of CN185460 vs. ExPASy Swiss-Prot
Match: RNF13_BOVIN (RING finger protein 13 OS=Bos taurus GN=RNF13 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.712e-13
Identity = 35/74 (47.30%), Postives = 46/74 (62.16%), Query Frame = -1
Query:  180 PIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLPCHHEYHMSCVDKWLKEIHGVCPLCRRDV--RQGATES 395
            P+   KKGD      E D C ICL EYE+GD++R+LPC H YH  CVD WL +    CP+C++ V   QG ++S
Sbjct:  227 PVHKFKKGD------EYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPSQGDSDS 294          
BLAST of CN185460 vs. ExPASy Swiss-Prot
Match: ATL5G_ARATH (Probable RING-H2 finger protein ATL5G OS=Arabidopsis thaliana GN=ATL5G PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12
Identity = 32/70 (45.71%), Postives = 46/70 (65.71%), Query Frame = -1
Query:  210 ESVVDSFPIKSHKKGDKAEGGVEPDQCYICLAEYEEGDRIRLLP-CHHEYHMSCVDKWLKEIHGVCPLCR 416
            ES++ S  +  +K GD   G V+   C +CL+E+EE + +RLLP C+H +H+ C+D WLK  H  CPLCR
Sbjct:  119 ESMIKSITVYKYKSGD---GFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKS-HSNCPLCR 184          
The following BLAST results are available for this feature:
BLAST of CN185460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RN167_RAT4.506e-1443.42E3 ubiquitin-protein ligase RNF167 OS=Rattus norve... [more]
RN167_MOUSE5.885e-1443.42E3 ubiquitin-protein ligase RNF167 OS=Mus musculus... [more]
RNF13_RAT1.311e-1347.30RING finger protein 13 OS=Rattus norvegicus GN=Rnf... [more]
RNF13_MOUSE1.311e-1347.30RING finger protein 13 OS=Mus musculus GN=Rnf13 PE... [more]
RN167_HUMAN1.311e-1342.11E3 ubiquitin-protein ligase RNF167 OS=Homo sapiens... [more]
RNF13_PONAB1.712e-1347.30RING finger protein 13 OS=Pongo abelii GN=RNF13 PE... [more]
RNF13_HUMAN1.712e-1347.30RING finger protein 13 OS=Homo sapiens GN=RNF13 PE... [more]
RNF13_CHICK1.712e-1347.30RING finger protein 13 OS=Gallus gallus GN=RNF13 P... [more]
RNF13_BOVIN1.712e-1347.30RING finger protein 13 OS=Bos taurus GN=RNF13 PE=2... [more]
ATL5G_ARATH4.217e-1245.71Probable RING-H2 finger protein ATL5G OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001F22_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001F22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185460 ID=CN185460; Name=CN185460; organism=Citrus sinensis; type=EST; length=680bp
TTTTTTTTTTTTTTTTTGGCAAAGATTCTACAATACATGNGAGCCTTCCT
ATCGCAATATTAAAATTCATGCACAGGTTTATAGTAAATATTGGTACACA
ACATTTATGTAGCAAAAATCTGTTACTATTTACATCATTATGCACAATTG
TTTCAAACAGATGGAATTTCCGAGTTGGATGATTCAGTGGCACCCTGACG
AACATCTCTCCGACATAGTGGACACACCCCATGAATCTCTTTTAGCCATT
TATCAACACAAGACATGTGATACTCATGGTGGCAAGGAAGAAGCCGTATT
CTGTCCCCTTCCTCATACTCGGCCAAGCAGATGTAACACTGATCAGGTTC
AACCCCACCCTCAGCTTTATCCCCCTTTTTGTGACTCTTGATAGGGAATG
AGTCAACAACTGATTCGGGGGCTGGAAGTGAGACCATGGATAAGGAAAGT
GACACAGGCTGGCGATGAATTTCATCCAAGACCTCAAACAGAGCTTCAGC
AAGCATGACAATTCGTGATATTGCACGGGTACCAGAATCCTCACTCATCA
CGAATGACTCACATGAGCATGTACCATCAGGATGGAGTCCAGATGGACAG
AATGTAGTTCGCCGGCTATTCTCATCAAGGCCAGCTCGAAGTCTTTCCCA
AATCTCAGATCTTGAATGCCTTCTTCGCTC
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