CN185455

Overview
NameCN185455
Unique NameCN185455
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9766 contig Csv1_Contig9766:304..1048. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN185455 vs. ExPASy Swiss-Prot
Match: 21KD_DAUCA (21 kDa protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.804e-20
Identity = 49/112 (43.75%), Postives = 76/112 (67.86%), Query Frame = -1 
Query:  401 MVKMSRFPGMIPRETAGAVADCIEVIGDSIDELQDSMDE---LGHIRNSNFWLTMGDVQTWVSAALTDEDTCVDGLQGRPLNRYTKTMIRRHILKVAHLTSNALALINSYAA 727
            M ++++F G+  R+ A A+ DC+E + DS+D +  S DE   L H + ++F   M +V+TWVSAALTDE TC+DG  G+ ++   K  +R  ++ VA +TSNALAL+N++AA
Sbjct:   79 MKRLNKFKGLKARQYA-AIHDCLEEVEDSLDRVSRSCDEMKNLSHAKGNDFTFRMSNVETWVSAALTDETTCMDGFAGKGMDGKIKESVRAQVVAVARVTSNALALVNNFAA 189
The following BLAST results are available for this feature:
BLAST of CN185455 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
21KD_DAUCA3.804e-2043.7521 kDa protein OS=Daucus carota PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001F19_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001F19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185455 ID=CN185455; Name=CN185455; organism=Citrus sinensis; type=EST; length=745bp
TTTTTTTTTTTTTTTTTATTGACATAATGGATATTTAGATATCCCCTCAC
CTCTATCGCTTGAAGCATCCCACACAGGCTCCCAGTTTTTCTGTGTGCAA
AAGAGAATATTTTACATCTTGCTTCTGTAATAGACATAGAAAATTACAGT
AACAGTATATCACACACATATCAGCTTGCAATCCACGCTAGCCCTATGGG
AATTTTGTCCTATACACATGTAAATATATCTCAAAGAAATAGGATAATTA
AAACCGACCGACACTCTTGAGTCTGACACAAATTAAGGATACGAAAATAT
ACAGGACAACGCTATATGAAGTAGCATGAAAGAGCGTTTCTAATTAGTGA
TTTAGAATGGCTTTGATCCGATCCCTTTAGGGAGATGGAGGGTTACTGCC
AGCGGCATAACTATTTATGAGAGCCAAGGCGTTGCTTGTCAAATGTGCAA
CTTTAAGAATATGCCTCCTGATCATCGTCTTCGTATATCTGTTCAAGGGC
CTACCTTGAAGCCCATCCACGCAAGTATCTTCATCCGTTAACGCTGCGCT
TACCCATGTTTGGACATCACCCATTGTGAGCCAAAAATTCGAGTTCCTGA
TGTGACCCAGTTCGTCCATAGAATCTTGGAGCTCATCTATTGAGTCACCG
ATCACCTCAATGCAATCTGCCACTGCCCCTGCGGTCTCCCTCGGGATCAT
GCCGGGGAATCTCGACATCTTGACCATCATTCTCGACGTTGATTT
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