CN185452

Overview
NameCN185452
Unique NameCN185452
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length772
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7030 contig Csv1_Contig7030:34..799. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN185452 vs. ExPASy Swiss-Prot
Match: ATP5H_ARATH (ATP synthase subunit d, mitochondrial OS=Arabidopsis thaliana GN=At3g52300 PE=1 SV=3)

HSP 1 Score: 269.626 bits (688), Expect = 1.315e-71
Identity = 130/168 (77.38%), Postives = 147/168 (87.50%), Query Frame = -1 
Query:  200 MSGAGKKIADVAFKAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIGSRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAXXXXXXXXXXXXXEIAEVQELKEKISTMTAEEYFEKHPELKKKFDDEIRNDYWGY 703
            MSGAGKKIADVAFKA RTIDW+GMAK+LV+DEAR+EF+ LRRAFDEVN+ LQTKFSQEPEPIDW+YYRKGIG+ +VD YK+AY+SIE+PKYVDKVTPEYK KFDALLVELKEA             EIA+VQE+ +K+STMTA+EYFEKHPELKKKFDDEIRND WGY
Sbjct:    1 MSGAGKKIADVAFKASRTIDWDGMAKVLVTDEARREFSNLRRAFDEVNTQLQTKFSQEPEPIDWDYYRKGIGAGIVDKYKEAYDSIEIPKYVDKVTPEYKPKFDALLVELKEAEQKSLKESERLEKEIADVQEISKKLSTMTADEYFEKHPELKKKFDDEIRNDNWGY 168
The following BLAST results are available for this feature:
BLAST of CN185452 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ATP5H_ARATH1.315e-7177.38ATP synthase subunit d, mitochondrial OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001F17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001F17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185452 ID=CN185452; Name=CN185452; organism=Citrus sinensis; type=EST; length=772bp
AATGTTGCATTGCCACGAAAACTGAATGTTTAGCATAGATGTGATCAAAG
CCCTTATTTTTGAAACCATGAGCAACAGGTTTATGCAAAAACAATTCGAA
TGATCATTATTATTTAACAAGCTGGGAAAACAGGGCAACTTCAGAAAATC
TTGGCCGAGCTAGGAAATGCAGCTGCTAAATTGAGCAAATGTGTGATCAA
TAGCCCCAGTAGTCATTCCTGATTTCATCATCGAACTTCTTTTTGAGCTC
CGGATGCTTTTCAAAGTATTCCTCAGCGGTCATGGTGCTGATCTTTTCCT
TCAGTTCTTGAACCTCAGCTATTTCTTTCTCCAAACGCTCGGACTCCTTA
AGAGATTTCCCTTCTGCTTCTTTCAATTCCACCAGCAAAGCATCAAACTT
AGATTTGTATTCAGGGGTGACTTTGTCTACATACTTTGGGACCTCTATGC
TTTCATAAGCCTGTTTGTACATGTCCACCAAGCGAGAGCCAATTCCTTTT
CTGTAATACTCCCAGTCAATAGGTTCAGGTTCCTGGCTGAACTTGGTCTG
AAGAGTGGAGTTGACTTCGTCGAAAGCGCGACGGAGAGTGGCGAACTCCT
TGCGTGCCTCATCGGAGACCAGCATCTTCGCCATCCCTTCCCAATCTATG
GTCCTTCCGGCCTTGAATGCGACGTCAGCTATTTTCTTGCCAGCTCCGCT
CATTTTCTCTCTCGACTGATTTTCCCTTTTTCTTTTCTCTTAATTTTTTG
ATTTTCTCAGCTCCCAAACCCT
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