CN185443

Overview
NameCN185443
Unique NameCN185443
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length788
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2024 contig Csv1_Contig2024:622..1410. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185443 vs. ExPASy Swiss-Prot
Match: TI10B_ARATH (Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.189e-12
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = -1 
Query:  387 PERAQPPSRPCDLPIARRNSLHRFLEKRKDRIVARAPYQVNGSAGAPDKPADSKSWL 557
            P +  P S  C+LPIARR SLHRFLEKRKDRI ++APYQ++GSA A  KP  + +WL
Sbjct:  191 PIQPNPASLACELPIARRASLHRFLEKRKDRITSKAPYQIDGSAEASSKPT-NPAWL 246
[Close]
BLAST of CN185443 vs. ExPASy Swiss-Prot
Match: TI10A_ARATH (Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10A PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.606e-11
Identity = 43/115 (37.39%), Postives = 62/115 (53.91%), Query Frame = -1 
Query:  372 YNSFAASLPKSPVE-STPPVSPGPPKIPTEPSCSVPPRSNSIPNFGNNLIPERAQPPSRPC-DLPIARRNSLHRFLEKRKDRIVARAPYQVNGSAGAPDKP--ADSKSWLGLAAQ 704
            +N F+A   K  +  ++   +    K  T+   ++   +N +P+       E  Q    P  +LPIARR SLHRFLEKRKDR+ ++APYQ+   A A   P    + SWLGLAA+
Sbjct:  138 FNDFSAEKAKEVINLASKGTANSLAKNQTDIRSNIATIANQVPHPRKTTTQEPIQSSPTPLTELPIARRASLHRFLEKRKDRVTSKAPYQLCDPAKASSNPQTTGNMSWLGLAAE 252
The following BLAST results are available for this feature:
BLAST of CN185443 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TI10B_ARATH3.189e-1261.40Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10... [more]
TI10A_ARATH4.606e-1137.39Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001F11_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185443 ID=CN185443; Name=CN185443; organism=Citrus sinensis; type=EST; length=788bp
TTTTTTTTTTTTTTTTTGAACTAATAAGTTATCTTATCTTTTTCCATCAA
TGTTAATTTACATGATTGTCAAATAGAGGTAACAAGATCACACACTCTAA
TGAAGATTCAAATATTGACTGAAGAAAGAGTCAACACTTAGAATTATTCA
TTGGGATAACATTAACTAAATTTTCAATAAAGAAGTTAATTACATAAACT
ATTGGTAAGAAGAATGATCGTCAGATCTATGGTGGGCTCATCAAAACCCA
ACCTAAAAGAAGATGGAAGATGAAGAAAAACAAAGCAAGGTTTATGTTTG
CCAAAAAGACGATGACCGGCCAATAATCAGTCCCTAAAACTGGATGCAAT
TTGCACAAACTACTGTGAAGTTTGAGCGGCCAGGCCAAGCCATGACTTAC
TATCAGCAGGCTTGTCTGGAGCCCCTGCTGAGCCATTCACTTGGTACGGT
GCTCTTGCAACAATCCTGTCTTTTCTCTTCTCCAAGAACCTGTGGAGTGA
ATTTCTCCTTGCAATTGGTAGATCACAAGGTCTCGAGGGAGGTTGAGCGC
GTTCTGGAATTAGATTGTTGCCAAAGTTAGGAATGCTATTTGATCGAGGA
GGAACCGAGCAACTAGGCTCTGTTGGAATTTTTGGGGGGCCAGGAGAAAC
CGGGGGAGTTGATTCAACTGGACTTTTGGGTAAACTAGCAGCAAAAGAGT
TGTAACCCTGGGCCGGCAGTTGCATAGGAGGATAAGCGGTACCATGGCTC
AGTGAGCTCCCGTTGCTTGCTAATTGCATGATTTCATT
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