CN185436

Overview
NameCN185436
Unique NameCN185436
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185436 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.014e-51
Identity = 101/153 (66.01%), Postives = 116/153 (75.82%), Query Frame = -3
Query:  142 MSMIPSFFGNRRSSVFDPFSLDVWDFSSSSQFPQ----ETSAFVNTRVDWKETPEAHVFKADLPGXXXXXXXXXXXXDRVLKISGQRKIEKEDKNDTWYRVERSSGAFSRRFRLPENVEVDQIKASIDCGVLTLIIPKAEAKKSNVRAIQISG 588
            MS+IPSFFG RRSSVFDPFSLDVWD      FP     E SAFV+TRVDWKETPEAHVFKAD+PG             RVL+ISG+R +EKEDKNDTW+RVERSSG   RRFRLPEN +VDQ+KAS++ GVLT+ +PK E KK +V+AI ISG
Sbjct:    1 MSLIPSFFGGRRSSVFDPFSLDVWDPFKDFPFPSSLSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIDISG 153          
BLAST of CN185436 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.168e-50
Identity = 100/153 (65.36%), Postives = 118/153 (77.12%), Query Frame = -3
Query:  142 MSMIPSFFGNRRSSVFDPFSLDVWDFSSSSQFPQ----ETSAFVNTRVDWKETPEAHVFKADLPGXXXXXXXXXXXXDRVLKISGQRKIEKEDKNDTWYRVERSSGAFSRRFRLPENVEVDQIKASIDCGVLTLIIPKAEAKKSNVRAIQISG 588
            MS+IPS FG RRS+VFDPFSLDVWD      FP     E SAFVNTRVDWKETPEAHVF+AD+PG            DRVL+ISG+R +EKEDKNDTW+RVERSSG F RRFRLPEN +V+Q+KAS++ GVLT+ +PK E KK +V+AI+ISG
Sbjct:    1 MSLIPSIFGGRRSNVFDPFSLDVWDPFKDFHFPTSLSAENSAFVNTRVDWKETPEAHVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 153          
BLAST of CN185436 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.525e-50
Identity = 101/153 (66.01%), Postives = 122/153 (79.74%), Query Frame = -3
Query:  142 MSMIPSFFGN-RRSSVFDPFSLDVWD---FSSSSQFPQETSAFVNTRVDWKETPEAHVFKADLPGXXXXXXXXXXXXDRVLKISGQRKIEKEDKNDTWYRVERSSGAFSRRFRLPENVEVDQIKASIDCGVLTLIIPKAEAKKSNVRAIQISG 588
            MSMIPSFF N RRS++FDPFSLDVWD     +SS   +E SA VN RVDW+ETPEAHVFKADLPG            D VLKISG+R +EKEDKNDTW+RVERSSG F+RRFRLPENV++DQ+KA+++ GVLT+ +PKAE KK++V++IQISG
Sbjct:    1 MSMIPSFFNNNRRSNIFDPFSLDVWDPFKELTSSSLSRENSAIVNARVDWRETPEAHVFKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVLTVTVPKAETKKADVKSIQISG 153          
BLAST of CN185436 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.992e-50
Identity = 99/158 (62.66%), Postives = 119/158 (75.32%), Query Frame = -3
Query:  142 MSMIPSFFGNRRSSVFDPFSLDVWD---------FSSSSQFPQETSAFVNTRVDWKETPEAHVFKADLPGXXXXXXXXXXXXDRVLKISGQRKIEKEDKNDTWYRVERSSGAFSRRFRLPENVEVDQIKASIDCGVLTLIIPKAEAKKSNVRAIQISG 588
            MS+IPSFFG RRS+VFDPFSLDVWD          + S+ FP+E SAFV+TRVDWKETPEAHVFKADLPG            DRVL+ISG+R +EKEDKND W+R+ERSSG F RRFRLPEN ++DQ+KA+++ GVLT+ +PK E KK  V+ I ISG
Sbjct:    1 MSLIPSFFGGRRSNVFDPFSLDVWDPFKDFPFNNSALSASFPRENSAFVSTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEVKKPEVKTIDISG 158          
BLAST of CN185436 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.992e-50
Identity = 101/158 (63.92%), Postives = 122/158 (77.22%), Query Frame = -3
Query:  142 MSMIPSFFGNRRSSVFDPFSLDVWD------FSSSS---QFPQETSAFVNTRVDWKETPEAHVFKADLPGXXXXXXXXXXXXDRVLKISGQRKIEKEDKNDTWYRVERSSGAFSRRFRLPENVEVDQIKASIDCGVLTLIIPKAEAKKSNVRAIQISG 588
            MS+IPSFF  RRS+VFDPFSLDVWD      FS+SS    FP+E  AFV+TRVDWKETPEAHVFKADLPG            DRVL+ISG+R +EKEDKND W+RVERSSG F RRFRLPEN ++D++KAS++ GVLT+ +PK E KK+ V++I+ISG
Sbjct:    1 MSLIPSFFSGRRSNVFDPFSLDVWDPLKDFPFSNSSPSASFPRENPAFVSTRVDWKETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTVPKEEIKKAEVKSIEISG 158          
BLAST of CN185436 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.398e-50
Identity = 100/161 (62.11%), Postives = 124/161 (77.02%), Query Frame = -3
Query:  142 MSMIPSFFGNRRSSVFDPFSLDVWD----------FSSSS--QFPQETSAFVNTRVDWKETPEAHVFKADLPGXXXXXXXXXXXXDRVLKISGQRKIEKEDKNDTWYRVERSSGAFSRRFRLPENVEVDQIKASIDCGVLTLIIPKAEAKKSNVRAIQISG 588
            MS+IP+FFG RR++VFDPFSLDVWD           SS+S  +F +E SAFV+TRVDWKETPEAHVFKAD+PG            D+VL+ISG+R +EKEDKNDTW+RVERSSG F RRFRLPEN +V+Q+KAS++ GVLT+ +PK E KK +V+AI+ISG
Sbjct:    1 MSLIPNFFGGRRNNVFDPFSLDVWDPFKDFPFPNTLSSASFPEFSRENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 161          
BLAST of CN185436 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.291e-49
Identity = 97/154 (62.99%), Postives = 119/154 (77.27%), Query Frame = -3
Query:  142 MSMIPSFFGNRRSSVFDPFSLDVWD-----FSSSSQFPQETSAFVNTRVDWKETPEAHVFKADLPGXXXXXXXXXXXXDRVLKISGQRKIEKEDKNDTWYRVERSSGAFSRRFRLPENVEVDQIKASIDCGVLTLIIPKAEAKKSNVRAIQISG 588
            MS+IP FFG RRS+VFDPFSLD+WD        +S    E SAFV+TRVDWKETPEAHVFKAD+PG            DRVL+ISG+R +EKEDKNDTW+RVERSSG F+RRFRLPEN +V+++KAS++ GVLT+ +PK E KK +V+AI+ISG
Sbjct:    1 MSLIPGFFGGRRSNVFDPFSLDMWDPFKDFHVPTSSVSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVLTVTVPKEEVKKPDVKAIEISG 154          
BLAST of CN185436 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 8.370e-49
Identity = 96/157 (61.15%), Postives = 118/157 (75.16%), Query Frame = -3
Query:  142 MSMIPSFFGNRRSSVFDPFSLDVWD--------FSSSSQFPQETSAFVNTRVDWKETPEAHVFKADLPGXXXXXXXXXXXXDRVLKISGQRKIEKEDKNDTWYRVERSSGAFSRRFRLPENVEVDQIKASIDCGVLTLIIPKAEAKKSNVRAIQISG 588
            MS+IPSFFG RRS+VFDPFSLDVWD         SS+S+F +ET+AFVNT +DWKETP+AHVFKADLPG             +VL+ISG+R  EKE+KND W+RVERSSG F RRFRLPEN +VD++KA++  GV+T+ +PK E KK  V+AI ISG
Sbjct:    1 MSIIPSFFGGRRSNVFDPFSLDVWDPFKDFPLVTSSASEFGKETAAFVNTHIDWKETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTVPKVEIKKPEVKAIDISG 157          
BLAST of CN185436 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 5.998e-47
Identity = 95/154 (61.69%), Postives = 114/154 (74.03%), Query Frame = -3
Query:  142 MSMIPSFFGNRRSSVFDPFSLDVWD-----FSSSSQFPQETSAFVNTRVDWKETPEAHVFKADLPGXXXXXXXXXXXXDRVLKISGQRKIEKEDKNDTWYRVERSSGAFSRRFRLPENVEVDQIKASIDCGVLTLIIPKAEAKKSNVRAIQISG 588
            MS+IPS FG  RS+VFDPFSLD+WD        +S    E SAFVNTRVDWKET EAHV KAD+PG            DRVL+ISG+R +EKEDKNDTW+RV+RSSG F RRFRLPEN +V+Q+KA ++ GVLT+ IPK E KKS+V+ I+ISG
Sbjct:    1 MSLIPSIFGGPRSNVFDPFSLDMWDPFKDFHVPTSSVSAENSAFVNTRVDWKETQEAHVLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENGVLTVTIPKEEVKKSDVKPIEISG 154          
BLAST of CN185436 vs. ExPASy Swiss-Prot
Match: HS178_ARATH (17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.279e-46
Identity = 97/157 (61.78%), Postives = 116/157 (73.89%), Query Frame = -3
Query:  142 MSMIPSFFGNRR--SSVFDPFSLDVWDFSSSSQFPQ----ETSAFVNTRVDWKETPEAHVFKADLPGXXXXXXXXXXXXDRVLKISGQRKIEKEDKNDTWYRVERSSGAFSRRFRLPENVEVDQIKASIDCGVLTLIIPKAE--AKKSNVRAIQISG 588
            MS+IPSFFGN R  +S+FDPFSLDVWD     QFP     ETSA  N RVDWKET EAHVFKADLPG            D VLKISG+R +EKE+K DTW+RVERSSG FSR+F+LPENV++DQ+KAS++ GVLT+ +PK E   KK+ V++I ISG
Sbjct:    1 MSLIPSFFGNNRRSNSIFDPFSLDVWDPFKELQFPSSLSGETSAITNARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMDQVKASMENGVLTVTVPKVEEAKKKAQVKSIDISG 157          
The following BLAST results are available for this feature:
BLAST of CN185436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
HSP11_SOYBN4.014e-5166.0117.3 kDa class I heat shock protein OS=Glycine max... [more]
HSP13_SOYBN1.168e-5065.3617.5 kDa class I heat shock protein OS=Glycine max... [more]
HS17B_ARATH1.525e-5066.0117.6 kDa class I heat shock protein 2 OS=Arabidops... [more]
HSP12_MEDSA1.992e-5062.6618.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP11_PEA1.992e-5063.9218.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HSP16_SOYBN3.398e-5062.1118.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP14_SOYBN1.291e-4962.9917.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_DAUCA8.370e-4961.1517.8 kDa class I heat shock protein OS=Daucus caro... [more]
HSP15_SOYBN5.998e-4761.6917.6 kDa class I heat shock protein OS=Glycine max... [more]
HS178_ARATH2.279e-4661.7817.8 kDa class I heat shock protein OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001F08_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185436 ID=CN185436; Name=CN185436; organism=Citrus sinensis; type=EST; length=632bp
TTTTTTTTTTTTTTTTTAAAAAAAGACACTTTACTCCTCTTATATAAGAT
TTTATTCACACATTAAATCCTAAAACCCGGAGACGACCTTATTATCATTA
TTAACAAACAAAGCCTTATTATCAGGAGAGAGGAGAATTCAGCCAGAAAT
TTGAATAGCCCTGACATTGGATTTCTTGGCCTCCGCTTTAGGAATGATAA
GAGTGAGCACACCACAGTCTATTGAGGCCTTAATCTGGTCCACCTCCACA
TTCTCCGGTAGCCTGAACCTCCGCGAGAACGCTCCACTGCTGCGCTCCAC
GCGATACCACGTGTCGTTCTTGTCTTCCTTCTCGATCTTCCTCTGCCCGC
TTATCTTAAGCACCCTGTCATCGTCGACCTCGACCTTCACTTCCTCTTTC
TTCACCCCCGGCAGATCGGCCTTGAACACGTGGGCTTCCGGGGTTTCCTT
CCAGTCGACGCGGGTGTTGACGAAAGCCGAGGTCTCTTGCGGGAACTGAG
ATGAGGAAGAGAAATCCCAGACGTCAAGAGAGAATGGATCGAAGACACTG
CTGCGGCGGTTCCCGAAAAAGCTTGGAATCATCGACATTTTCGATTAGAA
TTTAGAAGCTTGACAACCCACGAGTACGCCCT
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