CN185413

Overview
NameCN185413
Unique NameCN185413
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2481 contig Csv1_Contig2481:1..687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185413 vs. ExPASy Swiss-Prot
Match: TMEDA_DICDI (Transmembrane emp24 domain-containing protein A OS=Dictyostelium discoideum GN=empA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.006e-18
Identity = 60/194 (30.93%), Postives = 97/194 (50.00%), Query Frame = 1
Query:  106 ILALLMSLIGRLSSLSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYS--TPETVSFYIHVGHIPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYIRKLF 681
            +L +  + I    S  V+    EC+YE +  +    A  F V+            IDFT+ SP   +V++ +  S      ++  +G+Y FCF+N  S  T +TVSF + VG       +AK + L PI   I  L + + +V +EQ Y + R+  HR+T EST  R+L +++ E  +L   S  Q+ Y+R+ F
Sbjct:   13 LLCIASNSIVESFSFKVSAKVEECIYEEIGVDLSFTA-MFQVIQGGF------NDIDFTIISPDKRIVYSGQRESEGTKTLRSSFAGVYSFCFSNKMSSLTDKTVSFILSVGESSPIREIAKKKDLTPIERSIMTLSDGVIAVKNEQNYFKMREAAHRNTAESTNSRVLWWSVFEAFVLIALSIWQIYYLRRFF 199          
BLAST of CN185413 vs. ExPASy Swiss-Prot
Match: TMED2_MOUSE (Transmembrane emp24 domain-containing protein 2 OS=Mus musculus GN=Tmed2 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.958e-17
Identity = 57/196 (29.08%), Postives = 96/196 (48.98%), Query Frame = 1
Query:  106 ILALLMSLIGRLSS--LSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYS--TPETVSFYIHVGHIPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYIRKLF 681
            +LALL +L+   S   +S+  +  EC +E V   G  +   F V +           ID  +T P    ++     S  K+ F A   G YKFCF+N  S  TP+ V F I +G  P   ++  + H + +   I EL  A+ +V  EQ+Y+  R+  HR  N++T  R++ ++  E ++L   +  Q+ Y+++ F
Sbjct:    7 LLALLAALLATASGYFVSIDAHAEECFFERVT-SGTKMGLIFEVAEGGFL------DIDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFF 195          
BLAST of CN185413 vs. ExPASy Swiss-Prot
Match: TMED2_HUMAN (Transmembrane emp24 domain-containing protein 2 OS=Homo sapiens GN=TMED2 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.699e-16
Identity = 56/196 (28.57%), Postives = 96/196 (48.98%), Query Frame = 1
Query:  106 ILALLMSLIGRLSS--LSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYS--TPETVSFYIHVGHIPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYIRKLF 681
            +L LL +L+  +S   +S+  +  EC +E V   G  +   F V +           ID  +T P    ++     S  K+ F A   G YKFCF+N  S  TP+ V F I +G  P   ++  + H + +   I EL  A+ +V  EQ+Y+  R+  HR  N++T  R++ ++  E ++L   +  Q+ Y+++ F
Sbjct:    7 LLVLLAALLATVSGYFVSIDAHAEECFFERVT-SGTKMGLIFEVAEGGFL------DIDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFF 195          
BLAST of CN185413 vs. ExPASy Swiss-Prot
Match: TMED2_CRIGR (Transmembrane emp24 domain-containing protein 2 (Fragment) OS=Cricetulus griseus GN=TMED2 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.218e-16
Identity = 56/196 (28.57%), Postives = 95/196 (48.47%), Query Frame = 1
Query:  106 ILALLMSLIGRLSS--LSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYS--TPETVSFYIHVGHIPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYIRKLF 681
            +L LL +L+   S   +S+  +  EC +E V   G  +   F V +           ID  +T P    ++     S  K+ F A   G YKFCF+N  S  TP+ V F I +G  P   ++  + H + +   I EL  A+ +V  EQ+Y+  R+  HR  N++T  R++ ++  E ++L   +  Q+ Y+++ F
Sbjct:    2 VLVLLAALLATASGYFVSIDAHAEECFFERVT-SGTKMGLIFEVAEGGFL------DIDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFF 190          
BLAST of CN185413 vs. ExPASy Swiss-Prot
Match: TMED2_RAT (Transmembrane emp24 domain-containing protein 2 OS=Rattus norvegicus GN=Tmed2 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.897e-16
Identity = 56/196 (28.57%), Postives = 95/196 (48.47%), Query Frame = 1
Query:  106 ILALLMSLIGRLSS--LSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYS--TPETVSFYIHVGHIPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYIRKLF 681
            +L LL +L+   S   +S+  +  EC +E V   G  +   F V +           ID  +T P    ++     S  K+ F A   G YKFCF+N  S  TP+ V F I +G  P   ++  + H + +   I EL  A+ +V  EQ+Y+  R+  HR  N++T  R++ ++  E ++L   +  Q+ Y+++ F
Sbjct:    7 LLVLLAALLATASGYFVSIDAHAEECFFERVT-SGTKMGLIFEVAEGGFL------DIDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFF 195          
BLAST of CN185413 vs. ExPASy Swiss-Prot
Match: TMEDB_DICDI (Transmembrane emp24 domain-containing protein B OS=Dictyostelium discoideum GN=empB PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.464e-15
Identity = 62/199 (31.16%), Postives = 98/199 (49.25%), Query Frame = 1
Query:  109 LALLMSLIGRLSSLSVTVN--DVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVV----HTVKGTSGDKFEFKAPRSGMYKFCFNNPYS--TPETVSFYIHVGHIPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYIRKLF 681
            + + + LIG  S+L++ V     EC Y + I  G T    + V+   +        I+  +T P GN +    H      G K  F A  SG YK CFNN  S  T + V+F            +AK + + P++  + ++   L+SV+ EQK LR R+  +R T+EST  R++ +TI E ++L +    Q+ Y+RK F
Sbjct:   12 ILVTLFLIGSSSALTLQVEPKSQECFYNF-IESGKTSLLLYQVIRGGLL------DINVKLTDPKGNTIFERLHFDTQMKG-KQSFTAGESGAYKVCFNNEMSRFTAKVVTF-TWASEEEGVKEVAKGDSITPMDQSVQKIERVLQSVIHEQKKLRYREQANRDTSESTNARVVWWTIAEVIVLVVMGVGQIWYLRKWF 201          
BLAST of CN185413 vs. ExPASy Swiss-Prot
Match: TMED_NEMVE (Transmembrane emp24 domain-containing protein OS=Nematostella vectensis GN=v1g194562 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.041e-14
Identity = 38/139 (27.34%), Postives = 75/139 (53.96%), Query Frame = 1
Query:  271 IDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYST--PETVSFYIHVGHIPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYIRKLF 681
            ID  +  P   V+++ +  +  K+ F A   G Y +CF+N  ST  P+ + F + +G  P + +   +   D ++  +++L EA+  V  EQ+Y+  R+  HR  N++T  R++ ++  E ++L   +  QV Y+++ F
Sbjct:   59 IDVKIIGPDQKVIYSGERETSGKYTFAAHMDGTYNYCFSNKMSTMTPKVLKFSMDIGEAPKDTSKEDNAGHDKLSEMVSQLSEAMTGVKHEQEYMEVRERIHRSINDNTNSRVVWWSFFESLVLVAMTLGQVYYLKRFF 197          
BLAST of CN185413 vs. ExPASy Swiss-Prot
Match: TMED7_HUMAN (Transmembrane emp24 domain-containing protein 7 OS=Homo sapiens GN=TMED7 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 7.890e-14
Identity = 59/203 (29.06%), Postives = 98/203 (48.28%), Query Frame = 1
Query:  106 ILALLMSLIGRLSSLSVTV----NDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYS--TPETVSFYIHVGH----IPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYIRKLFS 684
            +LALL+ + G   +  +T     N  +C YE +  +G      F V+      +  H  +D  +  P G V++       D F F A ++G YKFCF+N +S  T +TV F   VG      P+E+ ++    ++   V I    EAL+SV+  Q + R R+ + R   E    R+  +++GE ++L + S  QV  ++  FS
Sbjct:   21 LLALLLLVPGPGGASEITFELPDNAKQCFYEDIA-QGTKCTLEFQVI------TGGHYDVDCRLEDPDGKVLYKEMKKQYDSFTFTASKNGTYKFCFSNEFSTFTHKTVYFDFQVGEDPPLFPSENRVSALTQMESACVSI---HEALKSVIDYQTHFRLREAQGRSRAEDLNTRVAYWSVGEALILLVVSIGQVFLLKSFFS 213          
BLAST of CN185413 vs. ExPASy Swiss-Prot
Match: ERP2_YEAST (Protein ERP2 OS=Saccharomyces cerevisiae GN=ERP2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.723e-13
Identity = 60/200 (30.00%), Postives = 96/200 (48.00%), Query Frame = 1
Query:  103 MILALLMSLIGRLSSLSVTVN----DVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYSTP-ETVSFYIHVGHIPNEHNLAKDEHLDPI-NVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYIRKLFS 684
            +ILAL+ S+    S   V ++      EC+Y  ++ E D++A  + V+    F       IDF +T+P G+V+ + K      F  K+   G Y FCF+N Y T  + V   +       + + A   + D I N  + E+   L  +     YLRAR+ R+  T  ST  RL   +I   +++A+ S  QVL I+ LF+
Sbjct:   15 LILALVNSVAASSSYAPVAISLPAFSKECLYYDMVTEDDSLAVGYQVLTGGNF------EIDFDITAPDGSVITSEKQKKYSDFLLKSFGVGKYTFCFSNNYGTALKKVEITLEKEKTLTDEHEADVNNDDIIANNAVEEIDRNLNKITKTLNYLRAREWRNMSTVNSTESRLTWLSILIIIIIAVISIAQVLLIQFLFT 208          
BLAST of CN185413 vs. ExPASy Swiss-Prot
Match: TMED3_MOUSE (Transmembrane emp24 domain-containing protein 3 OS=Mus musculus GN=Tmed3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.943e-12
Identity = 59/208 (28.37%), Postives = 101/208 (48.56%), Query Frame = 1
Query:  103 MILALLMSLIGR---LSSLSVTV----NDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYST--PETVSFYIHVGH----IPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTNESTRKRLLGYTIGEYVLLAMASALQVLYIRKLFSK 687
            M+L LL+ L+ R   L S  +T     N  +C +E V  +G   + ++ V+      +  H  +D  V  P GNV++       D F +K    G+Y+FCF+N +ST   +TV F   VG     +P+  N  +   L  +      + EAL++V+  Q + R R+ + R   E    R+  +++GE + L + S  QVL ++  F++
Sbjct:   13 MLLQLLLLLLLRAEPLRSAELTFELPDNAKQCFHEEV-EQGVKFSLDYQVI------TGGHYDVDCYVEDPRGNVIYRETKKQYDSFTYKTEAKGVYRFCFSNEFSTFSHKTVYFDFQVGDEPPILPDMGN--RVTALTQMESACVTIHEALKTVIDSQTHYRLREAQDRARAEDLNSRVSYWSVGETIALFVVSFSQVLLLKSFFTE 211          
The following BLAST results are available for this feature:
BLAST of CN185413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
TMEDA_DICDI9.006e-1830.93Transmembrane emp24 domain-containing protein A OS... [more]
TMED2_MOUSE9.958e-1729.08Transmembrane emp24 domain-containing protein 2 OS... [more]
TMED2_HUMAN1.699e-1628.57Transmembrane emp24 domain-containing protein 2 OS... [more]
TMED2_CRIGR2.218e-1628.57Transmembrane emp24 domain-containing protein 2 (F... [more]
TMED2_RAT2.897e-1628.57Transmembrane emp24 domain-containing protein 2 OS... [more]
TMEDB_DICDI5.464e-1531.16Transmembrane emp24 domain-containing protein B OS... [more]
TMED_NEMVE6.041e-1427.34Transmembrane emp24 domain-containing protein OS=N... [more]
TMED7_HUMAN7.890e-1429.06Transmembrane emp24 domain-containing protein 7 OS... [more]
ERP2_YEAST8.723e-1330.00Protein ERP2 OS=Saccharomyces cerevisiae GN=ERP2 P... [more]
TMED3_MOUSE1.943e-1228.37Transmembrane emp24 domain-containing protein 3 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001E20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001E20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185413 ID=CN185413; Name=CN185413; organism=Citrus sinensis; type=EST; length=687bp
AGTGCTCTGCTCTGCCTCAGCTATCGACGTCATCGGTCATCTCGCAGGAT
CTCAAAATCAAAGATGGAGAAGAGACAGAGACACAGATATGTAGCGACGT
ACATGATCCTAGCTCTTTTAATGAGCTTGATCGGCCGTCTGTCGTCTCTC
TCGGTGACGGTAAATGACGTGGAATGCGTCTATGAGTACGTCATCTACGA
AGGCGACACCGTAGCGGGAAATTTCGTGGTCGTTGACCACGACATCTTCT
GGAGCACCGATCACCCCGGCATTGATTTCACTGTGACATCTCCTGCTGGA
AATGTTGTACACACTGTTAAGGGGACATCTGGAGACAAGTTTGAATTTAA
GGCTCCACGAAGTGGGATGTACAAGTTCTGTTTTAATAATCCATATTCTA
CACCAGAAACAGTCTCTTTCTATATTCATGTGGGCCATATTCCCAATGAG
CATAACCTCGCCAAAGATGAACATCTAGACCCAATTAATGTGAAAATTGC
TGAGTTGAGGGAGGCATTGGAGTCTGTCGTGTCAGAGCAGAAGTACTTGA
GAGCACGTGATACTCGACATCGTCATACAAATGAGAGCACAAGAAAGCGT
CTTTTAGGCTACACAATTGGAGAATATGTTCTGCTGGCCATGGCAAGTGC
CCTTCAAGTGTTGTATATCCGCAAGCTCTTTAGCAAG
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