CN185394

Overview
NameCN185394
Unique NameCN185394
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185394 vs. ExPASy Swiss-Prot
Match: AIB_ARATH (Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis thaliana GN=AIB PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 7.619e-26
Identity = 67/124 (54.03%), Postives = 87/124 (70.16%), Query Frame = -2
Query:  363 INELQAKLKVMEAERENLSGNSRDLSAFESNPNVESQNRAPDVDIQAAHDEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKS-QGSEQLPKEKLIAAFSCESSSIQP 731
            I ELQ K+K+ME ER    G  + LS      N  +   +P+VDIQA ++EVVVRV  PLDSHPASR+IQA +++ ++++E+KLS   D +FHTFVIKS  GS+ L KEKLIAAF  E+SS QP
Sbjct:  437 IKELQEKVKIMEDERV---GTDKSLS----ESNTITVEESPEVDIQAMNEEVVVRVISPLDSHPASRIIQAMRNSNVSLMEAKLSLAEDTMFHTFVIKSNNGSDPLTKEKLIAAFYPETSSTQP 553          
BLAST of CN185394 vs. ExPASy Swiss-Prot
Match: BH013_ARATH (Transcription factor bHLH13 OS=Arabidopsis thaliana GN=BHLH13 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.539e-23
Identity = 60/129 (46.51%), Postives = 86/129 (66.67%), Query Frame = -2
Query:  348 INELQAKLKVMEAERENLSGNSRDLSAFESNPNVESQNRAPDVDIQAAHDEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQGSEQLPKEKLIAAFSCE-SSSIQPLSSVG 731
            INEL AKLKVMEAERE L         + SNP +   +   D+++Q + ++V VR++CPL+SHPASR+  AF+++++ V+ S L    D V HTFV+K   SE+L KEKLI+A S E ++S+Q  +S G
Sbjct:  475 INELHAKLKVMEAERERLG--------YSSNPPISLDS---DINVQTSGEDVTVRINCPLESHPASRIFHAFEESKVEVINSNLEVSQDTVLHTFVVK---SEELTKEKLISALSREQTNSVQSRTSSG 589          
BLAST of CN185394 vs. ExPASy Swiss-Prot
Match: BH003_ARATH (Transcription factor bHLH3 OS=Arabidopsis thaliana GN=BHLH3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.152e-12
Identity = 43/118 (36.44%), Postives = 70/118 (59.32%), Query Frame = -2
Query:  387 INELQAKLKVMEAERENLSGNSRDLSAFESNPNVESQNRAPDVDIQAAHDEVVVRVSCPLDSHPASRVIQAFKDAQITVVESKLSTGNDMVFHTFVIKSQG---SEQLPKEKLIAAFS 731
            I ++Q K++V E E++ +          ESN     Q    +VD Q  HD+ VVR+SCPL++HP S+VIQ  ++ ++   +S ++   + V HTF ++ QG   +EQL K+KL+A+ S
Sbjct:  362 ITDMQKKIRVYETEKQIMKRR-------ESN-----QITPAEVDYQQRHDDAVVRLSCPLETHPVSKVIQTLRENEVMPHDSNVAITEEGVVHTFTLRPQGGCTAEQL-KDKLLASLS 466          
The following BLAST results are available for this feature:
BLAST of CN185394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
AIB_ARATH7.619e-2654.03Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Ar... [more]
BH013_ARATH3.539e-2346.51Transcription factor bHLH13 OS=Arabidopsis thalian... [more]
BH003_ARATH2.152e-1236.44Transcription factor bHLH3 OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001E09_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185394 ID=CN185394; Name=CN185394; organism=Citrus sinensis; type=EST; length=732bp
TTTTTTTTTTTTTTTTTACAGGAGCAATATGCATTTAAAAAAAAAAACCA
TTAATAGTAATATCAGTTTCTTAATAACCAACGATGATAGACTTGGTTAA
ACTTACAAATTTAATTCATCTTGCAAAAAACTTCCTTATGACAAAATATG
TATAATATAAACATTCACAGAAAAATTGCTGCCCTAAATGTCAATAAGTA
GTTATTTTCTAATTCTAACTGGACCTGCTGTTTCCACTCAGAATCCTTTG
CCGTATAACAAAACCGAAGAAGAAACTTTTGAATTGTTCTTCTCTACATT
TTATGCTATCACTAAGTTAAATGCCATTCTTACTGCTACTGCCGCTACCC
AACTGATGATAATGGCTGTATTGAGCTTGATTCGCAGGAAAATGCTGCAA
TCAACTTCTCTTTTGGCAACTGCTCCGATCCCTGAGATTTGATTACAAAT
GTGTGAAATACCATATCATTTCCAGTAGAAAGTTTCGACTCCACAACTGT
GATTTGTGCGTCTTTAAAAGCTTGGATGACTCTTGATGCAGGATGTGAAT
CAAGAGGACAGCTCACTCTTACAACCACCTCATCATGGGCAGCTTGAATA
TCAACATCAGGGGCTCGGTTCTGACTTTCCACATTAGGATTCGACTCAAA
GGCAGACAAGTCTCTGGAGTTGCCACTTAGGTTCTCCCTCTCTGCTTCCA
TGACCTTTAGCTTTGCTTGAAGCTCATTGATG
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