CN185391

Overview
NameCN185391
Unique NameCN185391
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length554
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4590 contig Csv1_Contig4590:335..888. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185391 vs. ExPASy Swiss-Prot
Match: UMP3_ARATH (Uncharacterized protein At5g10860, mitochondrial OS=Arabidopsis thaliana GN=At5g10860 PE=1 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 2.045e-55
Identity = 111/126 (88.10%), Postives = 117/126 (92.86%), Query Frame = -1
Query:  174 VYDAVKSMTQHNVGALVVVKLGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGDXXXXXVSEHREELNRLNAFIQGGY 551
            VYDAVKSMTQHNVGALVVVK GEQ+++AGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITV+P+TKVLRAMQLMTDNRIRHIPVI DKGMIGMVSIGD     V EHREEL RLNA+IQGGY
Sbjct:   81 VYDAVKSMTQHNVGALVVVKPGEQQALAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVTPETKVLRAMQLMTDNRIRHIPVIKDKGMIGMVSIGDVVRAVVHEHREELQRLNAYIQGGY 206          
BLAST of CN185391 vs. ExPASy Swiss-Prot
Match: YHCV_BACSU (CBS domain-containing protein yhcV OS=Bacillus subtilis GN=yhcV PE=4 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.137e-12
Identity = 37/102 (36.27%), Postives = 64/102 (62.75%), Query Frame = -1
Query:  246 VYDAVKSMTQHNVGALVVVKLGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGD 551
            + +A   M QHNVGA+ VV+ G  K   G++T+RD   +   QGR  + T V ++M+ E  L++ +P+  +  A QLM  ++IR +P++D   ++G+V++GD
Sbjct:   21 IQEAASLMKQHNVGAIPVVEQGVLK---GMLTDRDIALRTTAQGRDGQ-TPVSEVMSTE--LVSGNPNMSLEDASQLMAQHQIRRLPIVDQNNLVGIVALGD 116          
BLAST of CN185391 vs. ExPASy Swiss-Prot
Match: Y525_METKA (Uncharacterized protein MK0525 OS=Methanopyrus kandleri GN=MK0525 PE=4 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.063e-11
Identity = 38/96 (39.58%), Postives = 62/96 (64.58%), Query Frame = -1
Query:  246 MTQHNVGALVVVKLGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEENKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKG-MIGMVSIGD 530
            M +H +G++V+V   E+    GIITERD + K++ QG++       DIM++   +ITV  D +V  A++LM D  IR +P++DD G +IG+V++ D
Sbjct:   30 MREHGIGSVVIVN--EKDEPIGIITERDLVIKVVSQGKNPDEVIARDIMSQP--VITVEEDMEVNEAVKLMVDKGIRRLPIVDDNGKLIGIVTMQD 121          
BLAST of CN185391 vs. ExPASy Swiss-Prot
Match: Y653_METJA (Uncharacterized protein MJ0653 OS=Methanocaldococcus jannaschii GN=MJ0653 PE=4 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.888e-11
Identity = 34/105 (32.38%), Postives = 63/105 (60.00%), Query Frame = -1
Query:  246 VYDAVKSMTQHNVGALVVVKLGEQKSVAGIITERDYLRKIIVQGRSSKSTKVGDIMTEE---NKLITVSPDTKVLRAMQLMTDNRIRHIPVIDDKGMIGMVSIGD 551
            +YD    MT++N+GA+V+V   E     GI+TERD +++++     SK+ K  D++ EE    K+IT+  +  +  A ++M  + I+ +PV+ D  ++G+V+  D
Sbjct:   26 IYDIANIMTENNIGAVVIV---ENNKPIGIVTERDIVKRVV-----SKNLKPKDVLAEEVMSKKIITIPQNASITEAAKIMATHGIKRLPVVKDGELVGIVTQSD 122          
The following BLAST results are available for this feature:
BLAST of CN185391 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
UMP3_ARATH2.045e-5588.10Uncharacterized protein At5g10860, mitochondrial O... [more]
YHCV_BACSU8.137e-1236.27CBS domain-containing protein yhcV OS=Bacillus sub... [more]
Y525_METKA1.063e-1139.58Uncharacterized protein MK0525 OS=Methanopyrus kan... [more]
Y653_METJA6.888e-1132.38Uncharacterized protein MJ0653 OS=Methanocaldococc... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001E07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185391 ID=CN185391; Name=CN185391; organism=Citrus sinensis; type=EST; length=554bp
TTAGTCCACAAGGTCTTATTTCACGTCAAAGCATATTGACATCTCGTTTA
AAGGGAAAAAGAAAAAGCATACAACAGGAGATGCATCTTACACGCCATAT
TTACAACCTCCTGTCTCGTTAGTAGTACTCAAAAAACATGCATCACAACA
TTTCATCTTGTCATCATCATCTAGTAACCTCCTTGTATAAAAGCATTCAG
GCGGTTTAACTCCTCACGATGCTCACTCACCACAACCCGAACAACATCTC
CAATGGACACCATGCCTATCATTCCCTTGTCATCAATTACCGGAATGTGC
CGAATACGGTTATCTGTCATCAATTGCATTGCCCGCAGAACTTTGGTGTC
AGGTGAGACTGTGATCAGCTTGTTCTCTTCAGTCATGATGTCCCCAACTT
TAGTTGACTTGGATGATCTTCCCTGCACTATGATCTTCCTGAGATAATCT
CTCTCTGTGATGATCCCAGCAACAGACTTTTGCTCTCCAAGTTTGACGAC
GACCAACGCTCCAACGTTATGCTGTGTCATCGACTTGACAGCATCATAGA
CCCT
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