CN185377

Overview
NameCN185377
Unique NameCN185377
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig430 contig Csv1_Contig430:574..1247. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN185377 vs. ExPASy Swiss-Prot
Match: CEFD_STRCL (Isopenicillin N epimerase OS=Streptomyces clavuligerus GN=cefD PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.682e-13
Identity = 68/233 (29.18%), Postives = 100/233 (42.92%), Query Frame = 1 
Query:   10 ANGRKVRLAMIDHVTSIPSVPIPVKELIKICREEGVDKVFVDGAQGIGCVDVDMKEIGADFYTGTLNKWVFCPPGAAFLYCRKSNEIDDLHHPVVSHEY----GNG----------------LAIESAWIGTRDYSAQLVVPQALEFVNRFEGGIEGIKKRNHKAVVEMGEMLAKAWGTHLGSP--PEMCSSMIMDGLPAMLGISSDSIALKLRTHLRNNFSVEVPIYYRVPG 642
            A G + RL    HV S   + +P  EL +  R  G+  V VDGA   G +D+D+  I  DFY G+ +KW+  P G  FL+      +++L    VS  Y    G+G                L  E    GTRD    L  P++++F  + E G   I+ R  +       +LA   G  L +P  PE+   M+   LP        + A +LR  L   F +E  +  + PG
Sbjct:  151 AMGPRTRLFFFSHVVSTTGLILPAAELCEEARARGITTV-VDGAHAPGFLDLDLSRIPCDFYAGSGHKWLLAPTGVGFLHL-APGRLEELEPTQVSWAYEPPEGSGPPAARDRFGSTPGLRRLECE----GTRDICPWLATPESIDF--QAELGPGAIRARRRELTDHARRLLADRPGRTLLTPDSPELSGGMVAYRLP------PGTDAAELRRGLWERFRIEAAVAEQPPG 369
The following BLAST results are available for this feature:
BLAST of CN185377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CEFD_STRCL1.682e-1329.18Isopenicillin N epimerase OS=Streptomyces clavulig... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001D23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001D23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185377 ID=CN185377; Name=CN185377; organism=Citrus sinensis; type=EST; length=674bp
GAGGGGAAAGCCAATGGTAGGAAAGTCAGATTGGCTATGATTGATCATGT
GACGTCTATTCCTAGTGTTCCGATTCCGGTTAAAGAATTGATCAAGATTT
GTCGGGAAGAGGGTGTCGATAAAGTATTTGTTGATGGTGCACAGGGGATT
GGGTGTGTTGATGTTGACATGAAAGAAATTGGGGCTGATTTTTACACTGG
TACTTTGAACAAGTGGGTTTTTTGCCCGCCTGGGGCAGCGTTTTTGTATT
GTAGGAAATCAAATGAAATTGATGATTTGCATCACCCTGTGGTGTCTCAT
GAGTATGGAAATGGGTTGGCTATCGAGAGTGCTTGGATTGGAACTAGGGA
TTATAGTGCCCAACTGGTGGTTCCTCAAGCTTTGGAGTTTGTTAACAGAT
TTGAAGGGGGAATTGAAGGAATCAAGAAGAGGAATCATAAAGCTGTTGTT
GAGATGGGGGAGATGTTGGCAAAAGCATGGGGAACCCATCTTGGGTCTCC
TCCGGAGATGTGTTCAAGCATGATCATGGATGGCTTGCCTGCTATGTTGG
GTATTTCTAGTGATTCCATTGCTTTAAAGTTGAGAACCCACTTGAGGAAT
AATTTTTCTGTTGAAGTACCTATCTATTACAGGGTACCGGGTGATGGAGT
GGTTAACCCAGTTACAGGATACGC
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