CN185372

Overview
NameCN185372
Unique NameCN185372
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length779
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5915 contig Csv1_Contig5915:905..1683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185372 vs. ExPASy Swiss-Prot
Match: RH56_ARATH (DEAD-box ATP-dependent RNA helicase 56 OS=Arabidopsis thaliana GN=RH56 PE=2 SV=2)

HSP 1 Score: 321.627 bits (823), Expect = 2.957e-87
Identity = 161/168 (95.83%), Postives = 166/168 (98.81%), Query Frame = -3
Query:  274 LHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYMPS 777
            LHGLVQHYIKLSE+EKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYK FKEG+KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFV+SASDS++LNQVQ RFEVDIKELPEQIDTSTYMPS
Sbjct:  260 LHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERFEVDIKELPEQIDTSTYMPS 427          
BLAST of CN185372 vs. ExPASy Swiss-Prot
Match: RH15_ARATH (DEAD-box ATP-dependent RNA helicase 15 OS=Arabidopsis thaliana GN=RH15 PE=2 SV=2)

HSP 1 Score: 319.316 bits (817), Expect = 1.467e-86
Identity = 160/168 (95.24%), Postives = 165/168 (98.21%), Query Frame = -3
Query:  274 LHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYMPS 777
            LHGLVQHYIKLSE+EK RKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYK FKEG+KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFV+SASDS++LNQVQ RFEVDIKELPEQIDTSTYMPS
Sbjct:  260 LHGLVQHYIKLSEMEKTRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERFEVDIKELPEQIDTSTYMPS 427          
BLAST of CN185372 vs. ExPASy Swiss-Prot
Match: RH56_ORYSJ (DEAD-box ATP-dependent RNA helicase 56 OS=Oryza sativa subsp. japonica GN=Os01g0549700 PE=2 SV=2)

HSP 1 Score: 313.538 bits (802), Expect = 8.052e-85
Identity = 158/168 (94.05%), Postives = 163/168 (97.02%), Query Frame = -3
Query:  274 LHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYMPS 777
            LHGLVQHYIKLSE EKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLL ECNFP+I IHSGM+QEERLTRYK FKEG+KRILVATDLVGRGIDIERVNIVINYDMPDSAD+YLHRVGRAGRFGTKGLAITFVSSASDSD+LNQVQ RFEVDIKELPEQIDTSTYMPS
Sbjct:  265 LHGLVQHYIKLSEAEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLCECNFPAISIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADSYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQIDTSTYMPS 432          
BLAST of CN185372 vs. ExPASy Swiss-Prot
Match: RH15_ORYSJ (DEAD-box ATP-dependent RNA helicase 15 OS=Oryza sativa subsp. japonica GN=Os01g0550000 PE=2 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 8.052e-85
Identity = 158/168 (94.05%), Postives = 163/168 (97.02%), Query Frame = -3
Query:  274 LHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYMPS 777
            LHGLVQHYIKLSE EKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLL ECNFP+I IHSGM+QEERLTRYK FKEG+KRILVATDLVGRGIDIERVNIVINYDMPDSAD+YLHRVGRAGRFGTKGLAITFVSSASDSD+LNQVQ RFEVDIKELPEQIDTSTYMPS
Sbjct:  265 LHGLVQHYIKLSEAEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLCECNFPAISIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADSYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQIDTSTYMPS 432          
BLAST of CN185372 vs. ExPASy Swiss-Prot
Match: SUB2_SCHPO (ATP-dependent RNA helicase uap56 OS=Schizosaccharomyces pombe GN=uap56 PE=1 SV=3)

HSP 1 Score: 256.529 bits (654), Expect = 1.168e-67
Identity = 125/166 (75.30%), Postives = 144/166 (86.75%), Query Frame = -3
Query:  280 LHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 777
            LHGL QHY+KL E  KNRK+NDLLD+L+FNQVVIFVKSVSRA EL++LL ECNFPSICIH G+ QEER+ RYK FK+ +KRI VATD+ GRGIDIERVNIVINYDMPDS D+YLHRVGRAGRFGTKGLAITF SS  DS IL+++Q RFEV+I ELP++ID  +YM
Sbjct:  267 LHGLQQHYVKLEEKAKNRKINDLLDSLEFNQVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSSSEEDSQILDKIQERFEVNITELPDEIDVGSYM 432          
BLAST of CN185372 vs. ExPASy Swiss-Prot
Match: SUB2_ASPTN (ATP-dependent RNA helicase sub2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=sub2 PE=3 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 8.663e-63
Identity = 119/167 (71.26%), Postives = 139/167 (83.23%), Query Frame = -3
Query:  280 LHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE-QIDTSTYM 777
            LHGL Q+YIKLSE EKNRKLNDLLD L+FNQV+IFVKS  RA EL+KLL ECNFPSI +HSG+SQEER+ RYK FKE NKRI VATD+ GRGIDIER+N+ INYD+P  AD+YLHRVGRAGRFGTKGL+I+FVSS  D  +L  ++ RFEV + E PE  +D+STYM
Sbjct:  271 LHGLQQYYIKLSESEKNRKLNDLLDNLEFNQVIIFVKSTQRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSSEDDEKVLKDIEKRFEVALPEYPEGGVDSSTYM 437          
BLAST of CN185372 vs. ExPASy Swiss-Prot
Match: SUB2_NEOFI (ATP-dependent RNA helicase sub2 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=sub2 PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.131e-62
Identity = 118/167 (70.66%), Postives = 141/167 (84.43%), Query Frame = -3
Query:  280 LHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE-QIDTSTYM 777
            LHGL Q+YIKLSE EKNRKLN+LLD+L+FNQV+IFVKS  RA EL+KLL ECNFPSI +HSG+SQEER+ RYK FKE NKRI VATD+ GRGIDIER+N+ INYD+P  AD+YLHRVGRAGRFGTKGL+I+FVSS  D  +L +++ RFEV + E PE  +D+STYM
Sbjct:  274 LHGLQQYYIKLSESEKNRKLNELLDSLEFNQVIIFVKSTLRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSSEEDEKVLKEIEKRFEVALPEYPEGGVDSSTYM 440          
BLAST of CN185372 vs. ExPASy Swiss-Prot
Match: SUB2_LODEL (ATP-dependent RNA helicase SUB2 OS=Lodderomyces elongisporus GN=SUB2 PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.131e-62
Identity = 115/167 (68.86%), Postives = 139/167 (83.23%), Query Frame = -3
Query:  280 LHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 777
            LHGL Q+YIKL E EKNRKL+DLLD+L+FNQV+IFVKS  RA ELNKLL  CNFPSI +HSG+ QEER+ RYK FKE NKRI V+TD+ GRGIDIER+N+ INYD+P+ AD YLHRVGRAGRFGTKGL I+FVS+  D ++L ++Q+RF+V I E PE+ +D STYM
Sbjct:  265 LHGLQQYYIKLEEKEKNRKLSDLLDSLEFNQVIIFVKSTQRANELNKLLCACNFPSIAVHSGLPQEERIERYKSFKEFNKRICVSTDVFGRGIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKGLGISFVSTKEDEEVLEKIQSRFDVKITEFPEEGVDPSTYM 431          
BLAST of CN185372 vs. ExPASy Swiss-Prot
Match: SUB2_ASPFU (ATP-dependent RNA helicase sub2 OS=Aspergillus fumigatus GN=sub2 PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.131e-62
Identity = 118/167 (70.66%), Postives = 141/167 (84.43%), Query Frame = -3
Query:  280 LHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE-QIDTSTYM 777
            LHGL Q+YIKLSE EKNRKLN+LLD+L+FNQV+IFVKS  RA EL+KLL ECNFPSI +HSG+SQEER+ RYK FKE NKRI VATD+ GRGIDIER+N+ INYD+P  AD+YLHRVGRAGRFGTKGL+I+FVSS  D  +L +++ RFEV + E PE  +D+STYM
Sbjct:  281 LHGLQQYYIKLSESEKNRKLNELLDSLEFNQVIIFVKSTLRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSSEEDEKVLKEIEKRFEVALPEYPEGGVDSSTYM 447          
BLAST of CN185372 vs. ExPASy Swiss-Prot
Match: SUB2_AJECN (ATP-dependent RNA helicase SUB2 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=SUB2 PE=3 SV=2)

HSP 1 Score: 239.965 bits (611), Expect = 1.131e-62
Identity = 116/167 (69.46%), Postives = 141/167 (84.43%), Query Frame = -3
Query:  280 LHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE-QIDTSTYM 777
            LHGL+Q+YIKL E EKNRKLN+LLD+L+FNQV+IFVKS  RA+EL+KLL ECNFPSI +HSG+SQEER+ RYK FKE NKRI VATD+ GRGIDIER+N+ INYD+P  AD+YLHRVGRAGRFGTKGLAI+FVSS  D ++L  ++ RFEV + E P+  +D+S YM
Sbjct:  275 LHGLLQYYIKLGESEKNRKLNELLDSLEFNQVIIFVKSTQRASELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLAISFVSSEQDQEVLKDIEKRFEVALPEYPQGGVDSSAYM 441          
The following BLAST results are available for this feature:
BLAST of CN185372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH56_ARATH2.957e-8795.83DEAD-box ATP-dependent RNA helicase 56 OS=Arabidop... [more]
RH15_ARATH1.467e-8695.24DEAD-box ATP-dependent RNA helicase 15 OS=Arabidop... [more]
RH56_ORYSJ8.052e-8594.05DEAD-box ATP-dependent RNA helicase 56 OS=Oryza sa... [more]
RH15_ORYSJ8.052e-8594.05DEAD-box ATP-dependent RNA helicase 15 OS=Oryza sa... [more]
SUB2_SCHPO1.168e-6775.30ATP-dependent RNA helicase uap56 OS=Schizosaccharo... [more]
SUB2_ASPTN8.663e-6371.26ATP-dependent RNA helicase sub2 OS=Aspergillus ter... [more]
SUB2_NEOFI1.131e-6270.66ATP-dependent RNA helicase sub2 OS=Neosartorya fis... [more]
SUB2_LODEL1.131e-6268.86ATP-dependent RNA helicase SUB2 OS=Lodderomyces el... [more]
SUB2_ASPFU1.131e-6270.66ATP-dependent RNA helicase sub2 OS=Aspergillus fum... [more]
SUB2_AJECN1.131e-6269.46ATP-dependent RNA helicase SUB2 OS=Ajellomyces cap... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001D20_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185372 ID=CN185372; Name=CN185372; organism=Citrus sinensis; type=EST; length=779bp
GGGGCCCCCGGCACTCTAATACAGCCAAGGTACCAGTTGAATAACATTCC
CAATAGCAGCCCTATCCAGAAGGTATTAAAAGGCTACAAATCCCAAAAAC
AAGAAAAGGCAGCGTAAAACCACAAAATAGAGGGATCCATCTGACAAATC
TCCAAGGCAACATATATGAAAGCCATTGGACTTCATCTAAAGAAACAAAT
ACATAAAGGGCCTTCAGCACCCTGCTTCCACATGCGCCTCAAATTTTCCA
CATCAGAGAACAGATCTCCACTATGATGGCATGTATGTAGATGTATCAAT
CTGCTCAGGAAGCTCCTTTATATCTACTTCAAACCTTGCCTGAACCTGAT
TGAGAATATCGGAGTCTGAAGCAGATGATACAAAAGTAATTGCAAGGCCC
TTGGTGCCAAACCTACCAGCTCTACCAACCCTGTGCAGATAAGTATCAGC
AGAATCTGGCATGTCATAATTGATGACAATGTTGACACGCTCAATGTCAA
TTCCCCTACCAACCAAATCTGTGGCCACAAGAATCCTCTTGTTCCCCTCC
TTGAAACCTTTGTAACGCGTCAACCTTTCTTCTTGGGACATGCCAGAATG
GATGCATATAGAAGGAAAATTGCATTCTACAAGTAACTTGTTTAACTCCG
CTGCTCGGCTAACACTTTTGACAAAGATAACAACTTGATTAAAGTCCAAT
GCATCAAGGAGATCATTCAACTTCCGATTTTTCTCCAGCTCACTCAATTT
GATGTAGTGCTGTACAAGACCATGAAGAG
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