CN185371

Overview
NameCN185371
Unique NameCN185371
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7934 contig Csv1_Contig7934:152..929. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185371 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 2.301e-31
Identity = 74/165 (44.85%), Postives = 97/165 (58.79%), Query Frame = 1
Query:    7 SSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAA---------TGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRS 474
            +S K AK++TD  T  S+GYGFVRF DE++Q  ++ EM G +C  RP+R+G A  K  A                  Y   Q      D  N+T+FVGGL   V+++ LK +F  +GE+V+VKIP GK CGFVQF NR  AE A++ L G  LG   IRLSWGR+
Sbjct:  211 NSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRN 375          
BLAST of CN185371 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.633e-27
Identity = 63/162 (38.89%), Postives = 95/162 (58.64%), Query Frame = 1
Query:   10 SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAAT-----GQQYQKATYQNTQGSQG--ENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRS 474
            S   AK++ D  TG S+ YGFVRF  E EQ  ++  M G LC  RP+RI  A+ K  A+            +  N Q +Q     DP NTT+FVGGL  ++++  L+  F  +G ++++KIP GK CGFVQ++ ++ AE+A++ + G  +G   IRL+WG +
Sbjct:  208 SCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQDLCSMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWGHN 369          
BLAST of CN185371 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.307e-26
Identity = 68/198 (34.34%), Postives = 102/198 (51.52%), Query Frame = 1
Query:    7 SSVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK---AATGQQYQKATYQNTQG-------------SQGEN--------------------------DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRS 474
            +S   AK+V D+ TG SKGYGFV+F +  EQ  +++EM GV  + R +++GP + ++   +      + ++  N +              S G N                          DPNNTT+F+GGL   VT+D L+  F  +G +V+VKIP GK CGFVQ+ +R  AE A++ + G  +    +RLSWGRS
Sbjct:  188 ASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKVGPTSGQQQHVSGNNDYNRSSSSLNNENVDSRFLSKGQSFLSNGNNNMGFKRNHMSQFIYPVQQQPSLNHFTDPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGMQGFPIANSRVRLSWGRS 385          
BLAST of CN185371 vs. ExPASy Swiss-Prot
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae GN=NGR1 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.558e-24
Identity = 74/240 (30.83%), Postives = 109/240 (45.42%), Query Frame = 1
Query:   10 SVKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATK-------------KAATGQQYQKATYQNTQG-------------------------------SQG----------------ENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQSDQAQWNGGGYYGFAQGYEA 549
            SVK  +V+TD  TG S+ +GFVRFGDE E+ R++ EM+G     R +R+  A  +             +    QQ+Q+   ++  G                               ++G                  DP NTT+FVGGL P  T+  L+++F  +G +++V+IP GK CGFV+F  R  AE ++  L G  +GG  IRLSWGR  S+     +   G   Y  + G  A
Sbjct:  218 SVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSGKWFQGRALRVAYATPRNNMMLQLQEQQQQQQQLQQQHQQLDQEDNNGPLLIKTANNLIQNNSNMLPLNALHNAPPMHLNEGGISNMRVNDSLPSNTYNTDPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWGRPSSSNAKTNSTIMGASQYMSSNGLRA 457          
BLAST of CN185371 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.678e-19
Identity = 49/171 (28.65%), Postives = 89/171 (52.05%), Query Frame = 1
Query:   13 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQ-GENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQSDQAQWNGGGY 522
            +  A+VV D  TG+SKGYGFV F ++ +   ++ +M G     R +R   A  K  A    Y+  T Q +      ++ PNN T++ GG+   +T+ +++  F  +G+++ +++   K   FV+F++   A  A+  +NGT + G  ++  WG+   +  +   Q N  GY
Sbjct:  132 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGY 302          
BLAST of CN185371 vs. ExPASy Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.710e-18
Identity = 53/187 (28.34%), Postives = 91/187 (48.66%), Query Frame = 1
Query:   13 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQ-NTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSN-----KQSDQAQW-NGGGYYGFAQGYEAY 552
            +  A+VV D  TG+SKGYGFV F ++ +   ++  M G     R +R   A  K  A     +  T Q   +    ++ P N T++ GG+   +TD +++  F  +G+++ +++   K   FV+F+    A  A+  +NGT + G  ++  WG+   +     +Q D +QW      YG  Q Y  Y
Sbjct:  123 ISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQWSQVYGNPQQYGQY 309          
BLAST of CN185371 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.234e-18
Identity = 53/187 (28.34%), Postives = 91/187 (48.66%), Query Frame = 1
Query:   13 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQ-NTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSN-----KQSDQAQW-NGGGYYGFAQGYEAY 552
            +  A+VV D  TG+SKGYGFV F ++ +   ++  M G     R +R   A  K  A     +  T Q   +    ++ P N T++ GG+   +TD +++  F  +G+++ +++   K   FV+F+    A  A+  +NGT + G  ++  WG+   +     +Q D +QW      YG  Q Y  Y
Sbjct:  140 ISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQWSQVYGNPQQYGQY 326          
BLAST of CN185371 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 3.810e-18
Identity = 52/185 (28.11%), Postives = 94/185 (50.81%), Query Frame = 1
Query:   13 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQ-GENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQSDQAQWNGGGY-YGFAQGYEAYGYA 561
            +  A+VV D  TG+SKGYGFV F ++ +   ++ +M G     R +R   A  K  A    Y+  T Q +      ++ P+N T++ GG+   +T+ +++  F  +G+++ +++   K   FV+F +   A  A+  +NGT + G  ++  WG+   +  +   Q N  GY   + Q  + YG A
Sbjct:  132 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQPYGQWGQWYGNA 316          
BLAST of CN185371 vs. ExPASy Swiss-Prot
Match: NSR1_YEAST (Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae GN=NSR1 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.957e-14
Identity = 53/182 (29.12%), Postives = 90/182 (49.45%), Query Frame = 1
Query:   13 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPA------GKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQSDQAQWNGGGYYGFAQG 540
            V GA+V+ +R T RS+GYG+V F ++S   +++ EM G     RP+    + +K A    + +K  + +T     +      T+F+G L  +   D +  +F ++GE+V V+IP        K  G+VQF+N   A++AL  L G  +  + +RL +     N    +    G G  G  +G
Sbjct:  194 VIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKK--FGDTPSEPSD------TLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPRPNNDGGRGGSRGFGGRGGGRG 367          
BLAST of CN185371 vs. ExPASy Swiss-Prot
Match: SXL_MEGSC (Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE=2 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 3.124e-12
Identity = 46/144 (31.94%), Postives = 74/144 (51.39%), Query Frame = 1
Query:   13 VKGAKVVTDRTTGRSKGYGFVRFGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAATGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCG------FVQFANRTCAEQALSVLN 426
            +   +++ D  TG S GYGFV FG E++ LR++  +NG+  + R  RI               K ++    G Q      +T ++V  L  S+TD+ L+T+FG+YG++V   I   K  G      F++F  R  A++A+S LN
Sbjct:  104 INTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNLNGI--TVRNKRI---------------KVSFARPGGEQ----LRDTNLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEAISALN 226          
The following BLAST results are available for this feature:
BLAST of CN185371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
YG41_SCHPO2.301e-3144.85Uncharacterized RNA-binding protein C23E6.01c OS=S... [more]
CSX1_SCHPO2.633e-2738.89RNA-binding post-transcriptional regulator csx1 OS... [more]
NAM8_YEAST1.307e-2634.34Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 P... [more]
NGR1_YEAST3.558e-2430.83Negative growth regulatory protein NGR1 OS=Sacchar... [more]
TIA1_MOUSE7.678e-1928.65Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=... [more]
TIAR_HUMAN1.710e-1828.34Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=... [more]
TIAR_MOUSE2.234e-1828.34Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=... [more]
TIA1_HUMAN3.810e-1828.11Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=T... [more]
NSR1_YEAST1.957e-1429.12Nuclear localization sequence-binding protein OS=S... [more]
SXL_MEGSC3.124e-1231.94Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001D19_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001D19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185371 ID=CN185371; Name=CN185371; organism=Citrus sinensis; type=EST; length=778bp
GAGGACTCGTCAGTGAAGGGTGCTAAAGTGGTCACTGATAGAACCACTGG
ACGCTCTAAGGGGTATGGTTTTGTGAGATTTGGGGATGAAAGTGAACAAT
TGCGTTCCATGACCGAAATGAATGGCGTGCTCTGCTCTACTAGACCTATG
CGGATTGGGCCAGCTGCCACCAAGAAAGCTGCCACTGGCCAGCAATATCA
GAAAGCTACTTATCAAAATACCCAAGGAAGCCAGGGCGAGAATGATCCAA
ATAATACAACAATATTTGTTGGGGGTTTGGATCCTAGTGTTACAGATGAC
ATTTTGAAAACAGTTTTTGGTCAATATGGTGAGTTAGTTCATGTGAAAAT
ACCAGCGGGCAAGCGCTGCGGGTTTGTTCAGTTTGCTAACAGAACTTGTG
CGGAGCAAGCACTATCAGTTTTGAATGGCACCCAATTAGGAGGACAAAGC
ATTAGACTGTCATGGGGGCGTAGTCCTTCAAACAAACAGTCGGATCAGGC
CCAATGGAACGGTGGTGGATACTATGGTTTTGCACAAGGATACGAGGCAT
ATGGATATGCGCCTCCTACCCAAGACCCGAACATGTACTATGGGGGCTTT
CCTGGATATGGGACTTACCAACAGCCAGGGTCTTACCAACAGCCACAGCA
GTGATGTATTTATGGTGCAAGTCTTGAAGCTGGGGTAGCCATAATCAAAT
TGAATTTTAGGAAGGTATTTGTTGTTTGGTTGTTGAGGATGATGTGAGTG
CTTGGAGATAGTTTATTGATTTTTTTTT
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