CN185368

Overview
NameCN185368
Unique NameCN185368
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7741 contig Csv1_Contig7741:326..1085. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185368 vs. ExPASy Swiss-Prot
Match: YGHX_ECOLI (Putative uncharacterized protein yghX OS=Escherichia coli (strain K12) GN=yghX PE=5 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 1.104e-14
Identity = 52/166 (31.33%), Postives = 80/166 (48.19%), Query Frame = -3
Query:  243 EAQHLMSGLDWPGAVKDIHASVNWLKA--NGSKKVGVTGYCMGGALAIASSVLVPEVDAVVSFYGVPPPELADPTQAKAPVQAHFGELDNFVGFSDVKTXXXXXXXXXASGVPYEVHIYPGSAHAFMNISPDGVKRRKEMGMDDHDPAAVELAWSRFQSWMTRYLS 734
            + + L   +D    + D  A++ +++     + KVG+TG+C GG ++ A++V  PE+   V FYG   P  AD  + +AP+  HF ELD  +     +          A+   YE +IYPG  H F N   D   R        +D +A +LAW R   W  +YLS
Sbjct:  129 KGRELQQQVDPTNLMNDFFAAIEFMQRYPQATGKVGITGFCYGGGVSNAAAVAYPELACAVPFYGRQAP-TADVAKIEAPLLLHFAELDTRIN----EGWPAYEAALKANNKVYEAYIYPGVNHGFHN---DSTPR--------YDKSAADLAWQRTLKWFDKYLS 278          
BLAST of CN185368 vs. ExPASy Swiss-Prot
Match: USF_AQUPY (Protein usf OS=Aquifex pyrophilus GN=usf PE=4 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.492e-11
Identity = 49/149 (32.89%), Postives = 70/149 (46.98%), Query Frame = -3
Query:  243 ASVNWLKA---NGSKKVGVTGYCMGGALAIASSVLVPE-VDAVVSFYGVPPPELADPTQAKAPVQAHFGELDNFVGFSDVKTXXXXXXXXXASGVPYEVHIYPGSAHAFMNISPDGVKRRKEMGMDDHDPAAVELAWSRFQSWMTRYLS 677
            ASV++LK       KKVGVTG+C GG L++  +   P+ +DA V FYG+P     D    K P+     E D FV   +V            +GV  +V +Y G  HAF+N          E   D +DP   + AW+   ++   YL+
Sbjct:   96 ASVDFLKECRYTSPKKVGVTGFCCGGTLSMYFAGKFPDLIDASVPFYGLPQITKIDAENIKVPIFFILAEKDEFVNNDEV---IDIAKKVWKNGVDVKVKVYSGVTHAFLN----------EKREDVYDPCRAQDAWNLTVAFFKEYLT 231          
The following BLAST results are available for this feature:
BLAST of CN185368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
YGHX_ECOLI1.104e-1431.33Putative uncharacterized protein yghX OS=Escherich... [more]
USF_AQUPY1.492e-1132.89Protein usf OS=Aquifex pyrophilus GN=usf PE=4 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001D18_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001D18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185368 ID=CN185368; Name=CN185368; organism=Citrus sinensis; type=EST; length=760bp
TTTTTTTTTTTTTTTTTAACACAAGTTGTGAAGTTCACCTTTGTGATAAT
CAATAAGCCTTCAGCAAACATACAATATAGGCAAACTACAAACAGACATA
TCCCAGTATCGAACCCCTTTGGAAACAAAAGGATACTTGCAGCTGTGTTA
TATGTAGAGTAGAGGCATACACACGGTTATTTATTTAATGATGGAAGCGA
GGTAAACACCATAGATTCATAATACTAGTGAATTACTTAAGCAGATAAGT
AGCGGGTCATCCATGATTGGAAGCGAGACCACGCCAGCTCAACTGCGGCT
GGATCGTGATCATCCATTCCCATTTCTTTCCTCCTCTTCACTCCATCCGG
AGAAATGTTCATGAAAGCATGTGCACTGCCAGGATAAATATGTACCTCAT
ATGGAACACCAGATGCTTTCAGCTTTTCCTCCAATGCTTTGGCAGTTTTC
ACATCTGAAAAGCCAACAAAATTGTCAAGCTCCCCAAAATGAGCTTGAAC
AGGTGCCTTAGCCTGGGTAGGATCGGCGAGCTCAGGTGGGGGAACCCCAT
AAAATGAAACAACAGCATCAACCTCAGGAACTAAGACAGAACTTGCAATA
GCGAGAGCACCTCCCATGCAATATCCAGTCACGCCAACCTTCTTGGAACC
ATTTGCCTTAAGCCAATTAACTGAAGCGTGGATATCCTTGACAGCACCTG
GCCAATCAAGACCACTCATCAAGTGCTGTGCTTCAGCAGTATCCAAACCA
ACCTTTCCCC
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