CN185364

Overview
NameCN185364
Unique NameCN185364
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4944 contig Csv1_Contig4944:255..887. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185364 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 9.621e-29
Identity = 65/121 (53.72%), Postives = 79/121 (65.29%), Query Frame = 3
Query:   27 MLEKLWDDVVAGPQPDRGLGRLRKITTTPLAVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXXRKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDWLYSGETRSKHH 389
            +L+KLWDD+VAGPQP+RGLG LRK+   PL +K+ GE+           S                    RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW+YSGETRSKHH
Sbjct:    3 LLDKLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGETRSKHH 110          
The following BLAST results are available for this feature:
BLAST of CN185364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN9.621e-2953.72Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001D15_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001D15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185364 ID=CN185364; Name=CN185364; organism=Citrus sinensis; type=EST; length=633bp
CTAGCAGCTAAATTGTAAATTTAAAGATGCTAGAGAAGCTTTGGGACGAT
GTTGTGGCAGGGCCTCAGCCTGATCGTGGCCTTGGCAGGCTGAGGAAAAT
CACCACAACACCCTTAGCAGTCAAAGAGGGTGGTGAGGCGGAGTCGTCGT
CGGGCAAGTTCCAGAGGTCTCTGTCAATGCCAGCGAGTCCAGGGGCACCG
TCGACGCCAGTGACGCCGACGACGCCGCTGTCGGCGCGTAAGGACAACGT
GTGGAGGAGCGTGTTTCACCCCGGTAGCAACCTTGCTACTAGGGGTATCG
GTGCAGAGGTCTTTGACAAGCCCACACATCCTAACTCTCCCACTGTTTAT
GACTGGCTTTACAGTGGGGAGACTAGGAGCAAGCATCATCACTAGTGGAT
GATACGCTACAGCGATGTAAATGAATGTGATGGGTCACCAACTCACCGGA
TGAGTTGCCTGTAGTCTGTAGATAGTGTCGTTTCGTTTTGGATTTCACAA
CGTGTCCTTGTCGTTTTGTTAATGCTATTTGTATTACGTGTCCTTCCTAT
CTAAAGTTTGGTTTTAAAATGCTGCTGACTAAAAGTAAATTAAAGACTGT
GATGTTTTTATATCATATAATTTAATAATTGTA
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