CN185362

Overview
NameCN185362
Unique NameCN185362
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12383 contig Csv1_Contig12383:617..1321. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185362 vs. ExPASy Swiss-Prot
Match: IF2P_RAT (Eukaryotic translation initiation factor 5B OS=Rattus norvegicus GN=Eif5b PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.733e-23
Identity = 55/115 (47.83%), Postives = 73/115 (63.48%), Query Frame = 2
Query:    5 KDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTXXXXXXXXXXXXXSNSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKKPFQ 349
            +DPIV+GV V  G  K GTP+C+P ++F+DIG + SIE NHK VD                 E   KMFGRHF+  D LVS ISR+SID LK  +RD++   +W+L+V+LKK F+
Sbjct: 1101 RDPIVIGVTVEAGQVKQGTPMCVPSKNFVDIGIVTSIEINHKQVDVAKKGQEVCVKIEPIPGESP-KMFGRHFEATDILVSKISRQSIDALKDWFRDEMQKSDWQLIVELKKVFE 1214          
BLAST of CN185362 vs. ExPASy Swiss-Prot
Match: IF2P_PONAB (Eukaryotic translation initiation factor 5B OS=Pongo abelii GN=EIF5B PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.733e-23
Identity = 55/115 (47.83%), Postives = 73/115 (63.48%), Query Frame = 2
Query:    5 KDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTXXXXXXXXXXXXXSNSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKKPFQ 349
            +DPIV+GV V  G  K GTP+C+P ++F+DIG + SIE NHK VD                 E   KMFGRHF+  D LVS ISR+SID LK  +RD++   +W+L+V+LKK F+
Sbjct: 1105 RDPIVMGVTVEAGQVKQGTPMCVPSKNFVDIGIVTSIEINHKQVDVAKKGQEVCVKIEPIPGESP-KMFGRHFEATDILVSKISRQSIDALKDWFRDEMQKSDWQLIVELKKVFE 1218          
BLAST of CN185362 vs. ExPASy Swiss-Prot
Match: IF2P_MOUSE (Eukaryotic translation initiation factor 5B OS=Mus musculus GN=Eif5b PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.733e-23
Identity = 55/115 (47.83%), Postives = 73/115 (63.48%), Query Frame = 2
Query:    5 KDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTXXXXXXXXXXXXXSNSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKKPFQ 349
            +DPIV+GV V  G  K GTP+C+P ++F+DIG + SIE NHK VD                 E   KMFGRHF+  D LVS ISR+SID LK  +RD++   +W+L+V+LKK F+
Sbjct: 1101 RDPIVIGVTVEAGQVKQGTPMCVPSKNFVDIGIVTSIEINHKQVDVAKKGQEVCVKIEPIPGESP-KMFGRHFEATDILVSKISRQSIDALKDWFRDEMQKSDWQLIVELKKVFE 1214          
BLAST of CN185362 vs. ExPASy Swiss-Prot
Match: IF2P_HUMAN (Eukaryotic translation initiation factor 5B OS=Homo sapiens GN=EIF5B PE=1 SV=4)

HSP 1 Score: 107.842 bits (268), Expect = 5.733e-23
Identity = 55/115 (47.83%), Postives = 73/115 (63.48%), Query Frame = 2
Query:    5 KDPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTXXXXXXXXXXXXXSNSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKKPFQ 349
            +DPIV+GV V  G  K GTP+C+P ++F+DIG + SIE NHK VD                 E   KMFGRHF+  D LVS ISR+SID LK  +RD++   +W+L+V+LKK F+
Sbjct: 1105 RDPIVMGVTVEAGQVKQGTPMCVPSKNFVDIGIVTSIEINHKQVDVAKKGQEVCVKIEPIPGESP-KMFGRHFEATDILVSKISRQSIDALKDWFRDEMQKSDWQLIVELKKVFE 1218          
BLAST of CN185362 vs. ExPASy Swiss-Prot
Match: IF2P_SCHPO (Eukaryotic translation initiation factor 5B OS=Schizosaccharomyces pombe GN=SPAC56F8.03 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.663e-20
Identity = 53/121 (43.80%), Postives = 74/121 (61.16%), Query Frame = 2
Query:    5 KDPIVLGVDVVEGIAKVGTPICIPQR------DFIDIGRIASIENNHKPVDTXXXXXXXXXXXXXSNSEEQQKMFGRHFDIEDELVSHISRKSIDVLK-ANYRDDLSMDEWRLLVKLKKPF 346
            +DPI+LGVDVVEG+ ++ TPI   ++        I++GR+AS+E NHKPVD                S   Q +FGR     D L SHI+R+SID LK   +RD++S DEW+L+++LKK F
Sbjct:  956 RDPIILGVDVVEGVLRINTPIVAVKQLPNGEPQIIELGRVASLEMNHKPVDKVKKGQAGAGVAMKLESSGSQILFGRQVTESDALYSHITRQSIDSLKDPAFRDEVSRDEWQLIIQLKKLF 1076          
BLAST of CN185362 vs. ExPASy Swiss-Prot
Match: IF2P_YEAST (Eukaryotic translation initiation factor 5B OS=Saccharomyces cerevisiae GN=FUN12 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.505e-15
Identity = 46/123 (37.40%), Postives = 69/123 (56.10%), Query Frame = 2
Query:    5 KDPIVLGVDVVEGIAKVGTPIC-------IPQRDFIDIGRIASIENNHKPV-DTXXXXXXXXXXXXXSNSEEQQKMFGRHFDIEDELVSHISRKSIDVLKAN-YRDDLSMDEWRLLVKLKKPF 346
            + P+++GVDV+EG  +VGTPIC         +R  + +G++ S+E NH+PV +               +   QQ ++GRH D  D L S +SR+SID LK   +RD ++  +W LL KLK  F
Sbjct:  877 RGPMIIGVDVLEGTLRVGTPICAVKTDPTTKERQTLILGKVISLEINHQPVQEVKKGQTAAGVAVRLEDPSGQQPIWGRHVDENDTLYSLVSRRSIDTLKDKAFRDQVARSDWLLLKKLKVVF 999          
BLAST of CN185362 vs. ExPASy Swiss-Prot
Match: IF2P_DICDI (Eukaryotic translation initiation factor 5B OS=Dictyostelium discoideum GN=eif5b PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 36/114 (31.58%), Postives = 65/114 (57.02%), Query Frame = 2
Query:    8 DPIVLGVDVVEGIAKVGTPICIPQRDFIDIGRIASIENNHKPVDTXXXXXXXXXXXXXSNSEEQQKMFGRHFDIEDELVSHISRKSIDVLKANYRDDLSMDEWRLLVKLKKPFQ 349
            +PI++GV V EG  ++GTPIC+P+ +  D+G++  I+ N K V               +N+   +    RHFD + + +S I+R+S+D LK  + +DL+  + +LL  +K  ++
Sbjct:  933 NPILVGVRVKEGTLRIGTPICVPESNCADVGKVIGIKLNEKDVTLAKKDDVVSVAIDDNNT---KTTIYRHFDDKKQWMSKITRESLDALKEGWSEDLTKQDIQLLKFMKTVYK 1043          
The following BLAST results are available for this feature:
BLAST of CN185362 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
IF2P_RAT5.733e-2347.83Eukaryotic translation initiation factor 5B OS=Rat... [more]
IF2P_PONAB5.733e-2347.83Eukaryotic translation initiation factor 5B OS=Pon... [more]
IF2P_MOUSE5.733e-2347.83Eukaryotic translation initiation factor 5B OS=Mus... [more]
IF2P_HUMAN5.733e-2347.83Eukaryotic translation initiation factor 5B OS=Hom... [more]
IF2P_SCHPO2.663e-2043.80Eukaryotic translation initiation factor 5B OS=Sch... [more]
IF2P_YEAST7.505e-1537.40Eukaryotic translation initiation factor 5B OS=Sac... [more]
IF2P_DICDI1.730e-1131.58Eukaryotic translation initiation factor 5B OS=Dic... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001D14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001D14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185362 ID=CN185362; Name=CN185362; organism=Citrus sinensis; type=EST; length=706bp
ATTGAAAGATCCAATCGTCTTGGGGGTTGATGTTGTTGAAGGCATAGCAA
AGGTTGGAACTCCAATTTGTATTCCCCAAAGGGATTTTATTGATATTGGC
CGAATTGCGTCTATTGAAAATAACCATAAACCCGTTGATACTGCCAAGAA
AGGCCAGAAAGCAGCCATCAAGATAGCTGGATCCAATTCTGAGGAGCAGC
AGAAAATGTTTGGCAGGCATTTTGATATTGAGGATGAACTTGTGAGCCAC
ATTTCAAGGAAATCAATTGATGTTCTTAAAGCCAATTACCGGGATGATCT
CTCTATGGATGAGTGGAGGTTGCTGGTGAAGCTGAAAAAACCTTTTCAAG
ATACAATAAGAAGTATATATAGTTGACAAATGGCTGATCAGTGAGGGAGT
GACGCTCGAGTCCGATGTGAAGGGTCTGTCGAGTGAAGAAAATTTTGAGC
TACACTGATATATGCAGAGGTTGGAATAACAAAAGCGTACTTTTTTGCTA
AAGGAAACTGAGAATCTCCATCAAAATGCCTTCGTTATTGGCATCATGTT
ATTGGCATCATATACGTACAAGCTGCAAGTATGCAGAACGGTAATGGGGT
TGGAGGGCTGAGAGTTTGTTGAGTGTCTTTGGAGATGTTTTAACTTGCAT
TTCAAGTTTTGTTATAGTTATCACCGATGTTTCCAGGTGATTAATAAATC
ATTTTT
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