CN185348

Overview
NameCN185348
Unique NameCN185348
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185348_ssr172 microsatellite CN185348_ssr172:172..186. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2474 contig Csv1_Contig2474:1..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185348 vs. ExPASy Swiss-Prot
Match: KINB1_ARATH (SNF1-related protein kinase regulatory subunit beta-1 OS=Arabidopsis thaliana GN=KINB1 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.747e-48
Identity = 92/133 (69.17%), Postives = 109/133 (81.95%), Query Frame = 1
Query:  253 SMSNISPPATPHRSRSPLLFAPQVPVAPLQRADDPPLYNQMRQHESHAAASNPLEKGVPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNL 651
            SMS+ SPP +P RS SP LFAPQVPVAPLQRA+ PP  N ++ ++S     NP E+G+PTIITWN GGN+VAVEGSWDNW SR+ L +SGKDHSIL VLPSG+YHYK IVDG+ +YIPDLPFVADE+G VCN+
Sbjct:   45 SMSS-SPPGSPARSPSPFLFAPQVPVAPLQRANAPPP-NNIQWNQSQRVFDNPPEQGIPTIITWNQGGNDVAVEGSWDNWRSRKKLQKSGKDHSILFVLPSGIYHYKVIVDGESKYIPDLPFVADEVGNVCNI 175          
BLAST of CN185348 vs. ExPASy Swiss-Prot
Match: KINB2_ARATH (SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana GN=KINB2 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.667e-35
Identity = 73/131 (55.73%), Postives = 94/131 (71.76%), Query Frame = 1
Query:  268 SPPATPHRSRSPLLFAPQVPVAPLQRADDPPLYNQ--MRQHES-HAAASNPLEKGVPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNL 651
            SPP +P  ++SPL+FAPQVPV PLQR D+  + N   M+   S +  ASN  E+G+PT+ITW +GG E+AVEGSWDNW +R  L RSGKD +I+ VLPSGVY Y+FIVDG WR+ P+LP   D+ G   N+
Sbjct:   49 SPPHSPRATQSPLMFAPQVPVLPLQRPDEIHIPNPSWMQSPSSLYEEASN--EQGIPTMITWCHGGKEIAVEGSWDNWKTRSRLQRSGKDFTIMKVLPSGVYEYRFIVDGQWRHAPELPLARDDAGNTFNI 177          
BLAST of CN185348 vs. ExPASy Swiss-Prot
Match: AAKB2_RAT (5'-AMP-activated protein kinase subunit beta-2 OS=Rattus norvegicus GN=Prkab2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.197e-13
Identity = 34/81 (41.98%), Postives = 50/81 (61.73%), Query Frame = 1
Query:  409 PLEKGVPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNL 651
            P ++  PT+I W+ GG EV + GS++NW+++  L +S  D   +L LP G + YKF VDG W + P  P V  +LG + NL
Sbjct:   71 PTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNL 151          
BLAST of CN185348 vs. ExPASy Swiss-Prot
Match: AAKB2_MOUSE (5'-AMP-activated protein kinase subunit beta-2 OS=Mus musculus GN=Prkab2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.197e-13
Identity = 34/81 (41.98%), Postives = 50/81 (61.73%), Query Frame = 1
Query:  409 PLEKGVPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNL 651
            P ++  PT+I W+ GG EV + GS++NW+++  L +S  D   +L LP G + YKF VDG W + P  P V  +LG + NL
Sbjct:   71 PAQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNL 151          
BLAST of CN185348 vs. ExPASy Swiss-Prot
Match: AAKB2_HUMAN (5'-AMP-activated protein kinase subunit beta-2 OS=Homo sapiens GN=PRKAB2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.197e-13
Identity = 34/81 (41.98%), Postives = 50/81 (61.73%), Query Frame = 1
Query:  409 PLEKGVPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNL 651
            P ++  PT+I W+ GG EV + GS++NW+++  L +S  D   +L LP G + YKF VDG W + P  P V  +LG + NL
Sbjct:   72 PTQQARPTVIRWSEGGKEVFISGSFNNWSTKIPLIKSHNDFVAILDLPEGEHQYKFFVDGQWVHDPSEPVVTSQLGTINNL 152          
BLAST of CN185348 vs. ExPASy Swiss-Prot
Match: AAKB1_MOUSE (5'-AMP-activated protein kinase subunit beta-1 OS=Mus musculus GN=Prkab1 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.685e-11
Identity = 37/91 (40.66%), Postives = 50/91 (54.95%), Query Frame = 1
Query:  379 QHESHAAASNPLEKGVPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNL 651
            QH+  A    P +   PT+  W  GG EV + GS++NW S+  L RS  +   +L LP G + YKF VDG W + P  P V  +LG V N+
Sbjct:   64 QHDLEANDKAPAQAR-PTVFRWTGGGKEVYLSGSFNNW-SKLPLTRSQNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNI 152          
BLAST of CN185348 vs. ExPASy Swiss-Prot
Match: AAKB1_RAT (5'-AMP-activated protein kinase subunit beta-1 OS=Rattus norvegicus GN=Prkab1 PE=1 SV=4)

HSP 1 Score: 67.781 bits (164), Expect = 5.982e-11
Identity = 36/91 (39.56%), Postives = 49/91 (53.85%), Query Frame = 1
Query:  379 QHESHAAASNPLEKGVPTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNL 651
            QH+       P +   PT+  W  GG EV + GS++NW S+  L RS  +   +L LP G + YKF VDG W + P  P V  +LG V N+
Sbjct:   64 QHDLEVNEKAPAQAR-PTVFRWTGGGKEVYLSGSFNNW-SKLPLTRSQNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNI 152          
BLAST of CN185348 vs. ExPASy Swiss-Prot
Match: AAKB1_PIG (5'-AMP-activated protein kinase subunit beta-1 (Fragment) OS=Sus scrofa GN=PRKAB1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.982e-11
Identity = 33/75 (44.00%), Postives = 45/75 (60.00%), Query Frame = 1
Query:  427 PTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNL 651
            PT+  W  GG EV + GS++NW S+  L RS  +   +L LP G + YKF+VDG W + P  P V  +LG V N+
Sbjct:   44 PTVFRWTGGGKEVYLSGSFNNW-SKLPLTRSHNNFVAILDLPEGEHQYKFLVDGQWTHDPSEPVVTSQLGTVNNI 117          
BLAST of CN185348 vs. ExPASy Swiss-Prot
Match: AAKB1_PONAB (5'-AMP-activated protein kinase subunit beta-1 OS=Pongo abelii GN=PRKAB1 PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 7.813e-11
Identity = 33/75 (44.00%), Postives = 44/75 (58.67%), Query Frame = 1
Query:  427 PTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNL 651
            PT+  W  GG EV + GS++NW S+  L RS  +   +L LP G + YKF VDG W + P  P V  +LG V N+
Sbjct:   79 PTVFRWTGGGKEVYLSGSFNNW-SKLPLTRSHNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNI 152          
BLAST of CN185348 vs. ExPASy Swiss-Prot
Match: AAKB1_HUMAN (5'-AMP-activated protein kinase subunit beta-1 OS=Homo sapiens GN=PRKAB1 PE=1 SV=4)

HSP 1 Score: 67.3958 bits (163), Expect = 7.813e-11
Identity = 33/75 (44.00%), Postives = 44/75 (58.67%), Query Frame = 1
Query:  427 PTIITWNYGGNEVAVEGSWDNWTSRRILHRSGKDHSILLVLPSGVYHYKFIVDGDWRYIPDLPFVADELGGVCNL 651
            PT+  W  GG EV + GS++NW S+  L RS  +   +L LP G + YKF VDG W + P  P V  +LG V N+
Sbjct:   79 PTVFRWTGGGKEVYLSGSFNNW-SKLPLTRSHNNFVAILDLPEGEHQYKFFVDGQWTHDPSEPIVTSQLGTVNNI 152          
The following BLAST results are available for this feature:
BLAST of CN185348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
KINB1_ARATH2.747e-4869.17SNF1-related protein kinase regulatory subunit bet... [more]
KINB2_ARATH2.667e-3555.73SNF1-related protein kinase regulatory subunit bet... [more]
AAKB2_RAT2.197e-1341.985'-AMP-activated protein kinase subunit beta-2 OS=... [more]
AAKB2_MOUSE2.197e-1341.985'-AMP-activated protein kinase subunit beta-2 OS=... [more]
AAKB2_HUMAN2.197e-1341.985'-AMP-activated protein kinase subunit beta-2 OS=... [more]
AAKB1_MOUSE2.685e-1140.665'-AMP-activated protein kinase subunit beta-1 OS=... [more]
AAKB1_RAT5.982e-1139.565'-AMP-activated protein kinase subunit beta-1 OS=... [more]
AAKB1_PIG5.982e-1144.005'-AMP-activated protein kinase subunit beta-1 (Fr... [more]
AAKB1_PONAB7.813e-1144.005'-AMP-activated protein kinase subunit beta-1 OS=... [more]
AAKB1_HUMAN7.813e-1144.005'-AMP-activated protein kinase subunit beta-1 OS=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001D06_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185348 ID=CN185348; Name=CN185348; organism=Citrus sinensis; type=EST; length=673bp
ATGAGGCTAGACTAGAGAGAGATTCAACCGGCAGCTTGCCCTTTGCCCTT
TGGCCGCTGCATTTTCATTTTCCCGTAGATAAAGTCGAAAGCTGAGAGTG
CATTTTGTCAAAGATTTGAGCTTGGATCTGTGATTGTGAATGTGATGGGA
AATGCAAACGGGAGAGAAGAGGGAGGAGGAGGAGGAGCAGGAGCGGGAGG
AGCAGGAGGAGCAGGAGCAAACGATGAGATTCAGATCAACGGCGGTGATC
ATTCAATGAGCAATATCAGTCCTCCAGCGACTCCTCATCGTTCTCGATCT
CCTCTCTTGTTCGCTCCTCAGGTTCCTGTTGCTCCCTTGCAAAGGGCTGA
TGATCCTCCCCTTTACAATCAAATGAGGCAACATGAATCTCATGCAGCTG
CTAGTAATCCTCTGGAGAAAGGAGTCCCCACTATTATTACATGGAATTAT
GGTGGTAATGAAGTGGCTGTGGAAGGATCCTGGGATAATTGGACATCAAG
GAGGATACTTCATAGATCTGGAAAGGATCACTCAATTCTTTTGGTCCTTC
CATCTGGCGTATACCATTACAAGTTCATCGTGGATGGTGATTGGAGATAT
ATTCCAGATTTGCCCTTTGTAGCTGATGAACTGGGTGGTGTTTGTAATCT
TCCTTGATGTTCATAGTTGCGTG
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