CN185346

Overview
NameCN185346
Unique NameCN185346
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5915 contig Csv1_Contig5915:927..1742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: RH56_ARATH (DEAD-box ATP-dependent RNA helicase 56 OS=Arabidopsis thaliana GN=RH56 PE=2 SV=2)

HSP 1 Score: 306.605 bits (784), Expect = 1.066e-82
Identity = 154/161 (95.65%), Postives = 159/161 (98.76%), Query Frame = -2
Query:  332 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYMPS 814
            YIKLSE+EKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYK FKEG+KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFV+SASDS++LNQVQ RFEVDIKELPEQIDTSTYMPS
Sbjct:  267 YIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERFEVDIKELPEQIDTSTYMPS 427          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: RH15_ARATH (DEAD-box ATP-dependent RNA helicase 15 OS=Arabidopsis thaliana GN=RH15 PE=2 SV=2)

HSP 1 Score: 304.294 bits (778), Expect = 5.292e-82
Identity = 153/161 (95.03%), Postives = 158/161 (98.14%), Query Frame = -2
Query:  332 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYMPS 814
            YIKLSE+EK RKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYK FKEG+KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFV+SASDS++LNQVQ RFEVDIKELPEQIDTSTYMPS
Sbjct:  267 YIKLSEMEKTRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERFEVDIKELPEQIDTSTYMPS 427          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: RH56_ORYSJ (DEAD-box ATP-dependent RNA helicase 56 OS=Oryza sativa subsp. japonica GN=Os01g0549700 PE=2 SV=2)

HSP 1 Score: 298.516 bits (763), Expect = 2.904e-80
Identity = 151/161 (93.79%), Postives = 156/161 (96.89%), Query Frame = -2
Query:  332 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYMPS 814
            YIKLSE EKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLL ECNFP+I IHSGM+QEERLTRYK FKEG+KRILVATDLVGRGIDIERVNIVINYDMPDSAD+YLHRVGRAGRFGTKGLAITFVSSASDSD+LNQVQ RFEVDIKELPEQIDTSTYMPS
Sbjct:  272 YIKLSEAEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLCECNFPAISIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADSYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQIDTSTYMPS 432          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: RH15_ORYSJ (DEAD-box ATP-dependent RNA helicase 15 OS=Oryza sativa subsp. japonica GN=Os01g0550000 PE=2 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 2.904e-80
Identity = 151/161 (93.79%), Postives = 156/161 (96.89%), Query Frame = -2
Query:  332 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYMPS 814
            YIKLSE EKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLL ECNFP+I IHSGM+QEERLTRYK FKEG+KRILVATDLVGRGIDIERVNIVINYDMPDSAD+YLHRVGRAGRFGTKGLAITFVSSASDSD+LNQVQ RFEVDIKELPEQIDTSTYMPS
Sbjct:  272 YIKLSEAEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLCECNFPAISIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADSYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQIDTSTYMPS 432          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: SUB2_SCHPO (ATP-dependent RNA helicase uap56 OS=Schizosaccharomyces pombe GN=uap56 PE=1 SV=3)

HSP 1 Score: 243.817 bits (621), Expect = 8.488e-64
Identity = 119/159 (74.84%), Postives = 138/159 (86.79%), Query Frame = -2
Query:  338 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 814
            Y+KL E  KNRK+NDLLD+L+FNQVVIFVKSVSRA EL++LL ECNFPSICIH G+ QEER+ RYK FK+ +KRI VATD+ GRGIDIERVNIVINYDMPDS D+YLHRVGRAGRFGTKGLAITF SS  DS IL+++Q RFEV+I ELP++ID  +YM
Sbjct:  274 YVKLEEKAKNRKINDLLDSLEFNQVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSSSEEDSQILDKIQERFEVNITELPDEIDVGSYM 432          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: SUB2_ASPTN (ATP-dependent RNA helicase sub2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=sub2 PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.268e-59
Identity = 114/160 (71.25%), Postives = 133/160 (83.12%), Query Frame = -2
Query:  338 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE-QIDTSTYM 814
            YIKLSE EKNRKLNDLLD L+FNQV+IFVKS  RA EL+KLL ECNFPSI +HSG+SQEER+ RYK FKE NKRI VATD+ GRGIDIER+N+ INYD+P  AD+YLHRVGRAGRFGTKGL+I+FVSS  D  +L  ++ RFEV + E PE  +D+STYM
Sbjct:  278 YIKLSESEKNRKLNDLLDNLEFNQVIIFVKSTQRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSSEDDEKVLKDIEKRFEVALPEYPEGGVDSSTYM 437          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: SUB2_NEOFI (ATP-dependent RNA helicase sub2 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=sub2 PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.657e-59
Identity = 113/160 (70.62%), Postives = 135/160 (84.38%), Query Frame = -2
Query:  338 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE-QIDTSTYM 814
            YIKLSE EKNRKLN+LLD+L+FNQV+IFVKS  RA EL+KLL ECNFPSI +HSG+SQEER+ RYK FKE NKRI VATD+ GRGIDIER+N+ INYD+P  AD+YLHRVGRAGRFGTKGL+I+FVSS  D  +L +++ RFEV + E PE  +D+STYM
Sbjct:  281 YIKLSESEKNRKLNELLDSLEFNQVIIFVKSTLRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSSEEDEKVLKEIEKRFEVALPEYPEGGVDSSTYM 440          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: SUB2_LODEL (ATP-dependent RNA helicase SUB2 OS=Lodderomyces elongisporus GN=SUB2 PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.657e-59
Identity = 110/160 (68.75%), Postives = 133/160 (83.12%), Query Frame = -2
Query:  338 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 814
            YIKL E EKNRKL+DLLD+L+FNQV+IFVKS  RA ELNKLL  CNFPSI +HSG+ QEER+ RYK FKE NKRI V+TD+ GRGIDIER+N+ INYD+P+ AD YLHRVGRAGRFGTKGL I+FVS+  D ++L ++Q+RF+V I E PE+ +D STYM
Sbjct:  272 YIKLEEKEKNRKLSDLLDSLEFNQVIIFVKSTQRANELNKLLCACNFPSIAVHSGLPQEERIERYKSFKEFNKRICVSTDVFGRGIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKGLGISFVSTKEDEEVLEKIQSRFDVKITEFPEEGVDPSTYM 431          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: SUB2_ASPFU (ATP-dependent RNA helicase sub2 OS=Aspergillus fumigatus GN=sub2 PE=3 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.657e-59
Identity = 113/160 (70.62%), Postives = 135/160 (84.38%), Query Frame = -2
Query:  338 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE-QIDTSTYM 814
            YIKLSE EKNRKLN+LLD+L+FNQV+IFVKS  RA EL+KLL ECNFPSI +HSG+SQEER+ RYK FKE NKRI VATD+ GRGIDIER+N+ INYD+P  AD+YLHRVGRAGRFGTKGL+I+FVSS  D  +L +++ RFEV + E PE  +D+STYM
Sbjct:  288 YIKLSESEKNRKLNELLDSLEFNQVIIFVKSTLRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSSEEDEKVLKEIEKRFEVALPEYPEGGVDSSTYM 447          
BLAST of CN185346 vs. ExPASy Swiss-Prot
Match: SUB2_CRYNE (ATP-dependent RNA helicase SUB2 OS=Cryptococcus neoformans GN=SUB2 PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.826e-59
Identity = 111/161 (68.94%), Postives = 132/161 (81.99%), Query Frame = -2
Query:  332 YIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYMPS 814
            Y+KL E EKNRKLNDLLD L+FNQV IFVKSV RA +L+ LL ECNFPSICIHSG+ Q ER++R++ FK   KRILVATD+ GRGID+ERVN+VINYD P  AD+YLHRVGRAGRFGTKGLAI+FVSS +D ++L ++Q RF V I  LPE +D +TYM S
Sbjct:  282 YLKLEEREKNRKLNDLLDNLEFNQVCIFVKSVQRATQLDALLQECNFPSICIHSGLQQAERISRFQQFKAFEKRILVATDIFGRGIDVERVNVVINYDAPSDADSYLHRVGRAGRFGTKGLAISFVSSDADQEVLQRIQERFTVAIPTLPETVDPATYMTS 442          
The following BLAST results are available for this feature:
BLAST of CN185346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH56_ARATH1.066e-8295.65DEAD-box ATP-dependent RNA helicase 56 OS=Arabidop... [more]
RH15_ARATH5.292e-8295.03DEAD-box ATP-dependent RNA helicase 15 OS=Arabidop... [more]
RH56_ORYSJ2.904e-8093.79DEAD-box ATP-dependent RNA helicase 56 OS=Oryza sa... [more]
RH15_ORYSJ2.904e-8093.79DEAD-box ATP-dependent RNA helicase 15 OS=Oryza sa... [more]
SUB2_SCHPO8.488e-6474.84ATP-dependent RNA helicase uap56 OS=Schizosaccharo... [more]
SUB2_ASPTN1.268e-5971.25ATP-dependent RNA helicase sub2 OS=Aspergillus ter... [more]
SUB2_NEOFI1.657e-5970.63ATP-dependent RNA helicase sub2 OS=Neosartorya fis... [more]
SUB2_LODEL1.657e-5968.75ATP-dependent RNA helicase SUB2 OS=Lodderomyces el... [more]
SUB2_ASPFU1.657e-5970.63ATP-dependent RNA helicase sub2 OS=Aspergillus fum... [more]
SUB2_CRYNE2.826e-5968.94ATP-dependent RNA helicase SUB2 OS=Cryptococcus ne... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001D05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185346 ID=CN185346; Name=CN185346; organism=Citrus sinensis; type=EST; length=815bp
TTTTTTTTTTTTTTTTTGGTGTCTAAGAATCTAATCGATTAACAGTGCCA
TTAAATTATCTCACAAGGAACTCTAATACAAGCCAAGGTACCAGTTGAAT
AACATTCCCAATAGCAGCAGTACCCAGAAGGTATTAAAAGGCTACAAATC
CCAAAAACAAGAAAAGGCAGCGTAAAACCACAAAATAGAGGGATCCATCT
GACAAATCTCCAAGGCAACATATATGAAAGCCATTGGACTTCATCTAAAG
AAACAAATACATAAAGGGCCTTCAGCACCCTGCTTCCACATGCGCCTCAA
ATTTTCCACATCAGAGAACAGATCTCCACTATGATGGCATGTATGTAGAT
GTATCAATCTGCTCAGGAAGCTCCTTTATATCTACTTCAAACCTTGCCTG
AACCTGATTGAGAATATCGGAGTCGGAAGCAGATGATACAAAAGTAATTG
CAAGGCCCTTGGTGCCAAACCTACCAGCTCTACCAACCCTGTGCAGATAA
GTATCAGCAGAATCTGGCATGTCATAATTGATGACAATGTTGACACGCTC
AATGTCAATTCCCCTACCAACCAAATCTGTGGCCACAAGAATCCTCTTGT
TCCCCTCCTTGAAACCTTTGTAACGCGTCAACCTTTCTTCTTGGGACATG
CCAGAATGGATGCATATAGAAGGAAAATTGCATTCTACAAGTAACTTGTT
TAACTCCGCTGCTCGGCTAACACTTTTGACAAAGATAACAACTTGATTAA
AGTCCAATGCATCAAGGAGATCATTCAACTTCCGATTTTTCTCCAGCTCA
CTCAATTTGATGTAG
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