CN185343

Overview
NameCN185343
Unique NameCN185343
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2679 contig Csv1_Contig2679:1..603. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS31_ARATH (40S ribosomal protein S3-1 OS=Arabidopsis thaliana GN=RPS3A PE=2 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 3.187e-85
Identity = 159/173 (91.91%), Postives = 168/173 (97.11%), Query Frame = 1 
Query:  106 MATQISKKRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSAVR 624
            MATQISKKRKFVADG F+AELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLGEKGRRIRELTS+VQKRFKFP +SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRF+MESGA+GCEVIVSGKLRA RAKSMKFKDGYM+SSGQP  EY+D+AVR
Sbjct:    1 MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVR 173
[Close]
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS32_ARATH (40S ribosomal protein S3-2 OS=Arabidopsis thaliana GN=RPS3B PE=1 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 4.162e-85
Identity = 159/173 (91.91%), Postives = 167/173 (96.53%), Query Frame = 1 
Query:  106 MATQISKKRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSAVR 624
            M TQISKKRKFVADG F+AELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLGEKGRRIRELTS+VQKRFKFP +SVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRF+MESGA+GCEVIVSGKLRA RAKSMKFKDGYM+SSGQP  EY+DSAVR
Sbjct:    1 MTTQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAVR 173
[Close]
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS33_ARATH (40S ribosomal protein S3-3 OS=Arabidopsis thaliana GN=RPS3C PE=1 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 9.273e-85
Identity = 158/173 (91.33%), Postives = 168/173 (97.11%), Query Frame = 1 
Query:  106 MATQISKKRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSAVR 624
            MATQISKKRKFVADG F+AELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQNVLGEKGRRIRELTS+VQKRFKFP++SVELYAEKV NRGLCAIAQAESLRYKLLGGLAVRRACYGVLRF+MESGA+GCEVIVSGKLRA RAKSMKFKDGYM+SSGQP  EY+D+AVR
Sbjct:    1 MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSLVQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVR 173
[Close]
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_RAT (40S ribosomal protein S3 OS=Rattus norvegicus GN=Rps3 PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 1.434e-77
Identity = 151/173 (87.28%), Postives = 156/173 (90.17%), Query Frame = 1 
Query:  106 MATQISKKRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSAVR 624
            MA QISKKRKFVADG F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGA+GCEV+VSGKLR  RAKSMKF DG MI SG PVN Y+D+AVR
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVR 173
[Close]
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_PIG (40S ribosomal protein S3 OS=Sus scrofa GN=RPS3 PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 1.434e-77
Identity = 151/173 (87.28%), Postives = 156/173 (90.17%), Query Frame = 1 
Query:  106 MATQISKKRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSAVR 624
            MA QISKKRKFVADG F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGA+GCEV+VSGKLR  RAKSMKF DG MI SG PVN Y+D+AVR
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVR 173
[Close]
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_MOUSE (40S ribosomal protein S3 OS=Mus musculus GN=Rps3 PE=1 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 1.434e-77
Identity = 151/173 (87.28%), Postives = 156/173 (90.17%), Query Frame = 1 
Query:  106 MATQISKKRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSAVR 624
            MA QISKKRKFVADG F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGA+GCEV+VSGKLR  RAKSMKF DG MI SG PVN Y+D+AVR
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVR 173
[Close]
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_HUMAN (40S ribosomal protein S3 OS=Homo sapiens GN=RPS3 PE=1 SV=2)

HSP 1 Score: 288.886 bits (738), Expect = 1.434e-77
Identity = 151/173 (87.28%), Postives = 156/173 (90.17%), Query Frame = 1 
Query:  106 MATQISKKRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSAVR 624
            MA QISKKRKFVADG F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGA+GCEV+VSGKLR  RAKSMKF DG MI SG PVN Y+D+AVR
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVR 173
[Close]
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_BOVIN (40S ribosomal protein S3 OS=Bos taurus GN=RPS3 PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 1.434e-77
Identity = 151/173 (87.28%), Postives = 156/173 (90.17%), Query Frame = 1 
Query:  106 MATQISKKRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSAVR 624
            MA QISKKRKFVADG F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGA+GCEV+VSGKLR  RAKSMKF DG MI SG PVN Y+D+AVR
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVR 173
[Close]
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS31_XENLA (40S ribosomal protein S3-A OS=Xenopus laevis GN=rps3-A PE=2 SV=2)

HSP 1 Score: 288.886 bits (738), Expect = 1.434e-77
Identity = 151/173 (87.28%), Postives = 156/173 (90.17%), Query Frame = 1 
Query:  106 MATQISKKRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSAVR 624
            MA QISKKRKFVADG F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGA+GCEV+VSGKLR  RAKSMKF DG MI SG PVN Y+D+AVR
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVR 173
[Close]
BLAST of CN185343 vs. ExPASy Swiss-Prot
Match: RS3_AMBME (40S ribosomal protein S3 OS=Ambystoma mexicanum GN=RPS3 PE=2 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 3.194e-77
Identity = 150/173 (86.71%), Postives = 156/173 (90.17%), Query Frame = 1 
Query:  106 MATQISKKRKFVADGGFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAQGCEVIVSGKLRAPRAKSMKFKDGYMISSGQPVNEYLDSAVR 624
            MA QISKKRKFVADG F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQNVLGEKGRRIRELT+VVQKRF FPE SVELYAEKV  RGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESG++GCEV+VSGKLR  RAKSMKF DG MI SG PVN Y+D+AVR
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGSKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVR 173
The following BLAST results are available for this feature:
BLAST of CN185343 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
RS31_ARATH3.187e-8591.9140S ribosomal protein S3-1 OS=Arabidopsis thaliana... [more]
RS32_ARATH4.162e-8591.9140S ribosomal protein S3-2 OS=Arabidopsis thaliana... [more]
RS33_ARATH9.273e-8591.3340S ribosomal protein S3-3 OS=Arabidopsis thaliana... [more]
RS3_RAT1.434e-7787.2840S ribosomal protein S3 OS=Rattus norvegicus GN=R... [more]
RS3_PIG1.434e-7787.2840S ribosomal protein S3 OS=Sus scrofa GN=RPS3 PE=... [more]
RS3_MOUSE1.434e-7787.2840S ribosomal protein S3 OS=Mus musculus GN=Rps3 P... [more]
RS3_HUMAN1.434e-7787.2840S ribosomal protein S3 OS=Homo sapiens GN=RPS3 P... [more]
RS3_BOVIN1.434e-7787.2840S ribosomal protein S3 OS=Bos taurus GN=RPS3 PE=... [more]
RS31_XENLA1.434e-7787.2840S ribosomal protein S3-A OS=Xenopus laevis GN=rp... [more]
RS3_AMBME3.194e-7786.7140S ribosomal protein S3 OS=Ambystoma mexicanum GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001D02_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185343 ID=CN185343; Name=CN185343; organism=Citrus sinensis; type=EST; length=626bp
CCGATGCAGGCCAGTATATATTATCGCAAACATTAGGGTTTACTGACTAG
AGAGTGAGAGACTCCCAAAGCGGCGAAGCAGCAGCGGTGTTGGATTCTGA
GAAACATGGCTACTCAGATTAGCAAGAAGCGGAAATTTGTTGCCGACGGT
GGCTTCTTTGCGGAGCTTAATGAAGTTCTGACCCGAGAGCTTGCGGAAGA
TGGATACTCTGGTGTCGAAGTTAGGGTTACACCTGTGCGCACTGAGATCA
TCATTAGGGCCACTCGCACTCAGAATGTTCTCGGTGAGAAGGGAAGAAGG
ATTAGGGAGCTTACTTCTGTTGTTCAGAAACGATTCAAGTTTCCAGAGAA
CAGTGTGGAGCTATATGCTGAGAAAGTTAACAATAGGGGTCTCTGTGCCA
TTGCTCAGGCTGAGTCTCTGCGTTACAAGCTTCTTGGAGGTCTCGCTGTT
CGAAGGGCATGCTATGGTGTGCTGAGATTTATCATGGAGAGTGGTGCCCA
GGGATGTGAGGTTATTGTGAGTGGAAAGCTCCGGGCTCCACGTGCAAAGT
CCATGAAATTTAAAGATGGGTACATGATATCCTCAGGTCAACCTGTGAAT
GAATACCTCGACTCAGCTGTAAGACA
back to top