CN185335

Overview
NameCN185335
Unique NameCN185335
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185335 vs. ExPASy Swiss-Prot
Match: NDUS4_RAT (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Rattus norvegicus GN=Ndufs4 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.242e-22
Identity = 53/125 (42.40%), Postives = 75/125 (60.00%), Query Frame = 2
Query:   98 SRAFSADALVEVKPGEIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKW 469
            ++  + D  ++V P     ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST DP +N+    L+F +KE A  FAE+HGW Y V     P  K KSY  NF W
Sbjct:   50 TQLITVDEKLDVTP-----LTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNM---VLTFSAKEDAVAFAEKHGWSYDVEGRKVPKPKSKSYGANFSW 166          
BLAST of CN185335 vs. ExPASy Swiss-Prot
Match: NDUS4_MOUSE (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Mus musculus GN=Ndufs4 PE=1 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 5.531e-22
Identity = 50/110 (45.45%), Postives = 70/110 (63.64%), Query Frame = 2
Query:  143 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKW 469
            +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST DP +N+    L+F +KE A  FAE++GW Y V +   P  K KSY  NF W
Sbjct:   60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNM---VLTFSAKEDAIAFAEKNGWSYDVEEKKVPKPKSKSYGANFSW 166          
BLAST of CN185335 vs. ExPASy Swiss-Prot
Match: NDUS4_HUMAN (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Homo sapiens GN=NDUFS4 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.223e-22
Identity = 49/110 (44.55%), Postives = 70/110 (63.64%), Query Frame = 2
Query:  143 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKW 469
            +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST DP +N+    L+F +KE A  FAE++GW Y + +   P  K KSY  NF W
Sbjct:   60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNM---VLTFSTKEDAVSFAEKNGWSYDIEERKVPKPKSKSYGANFSW 166          
BLAST of CN185335 vs. ExPASy Swiss-Prot
Match: NDUS4_GORGO (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS4 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.223e-22
Identity = 49/110 (44.55%), Postives = 70/110 (63.64%), Query Frame = 2
Query:  143 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKW 469
            +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST DP +N+    L+F +KE A  FAE++GW Y + +   P  K KSY  NF W
Sbjct:   60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNM---VLTFSTKEDAVSFAEKNGWSYDIEERKVPKPKSKSYGANFSW 166          
BLAST of CN185335 vs. ExPASy Swiss-Prot
Match: NDUS4_PONPY (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Pongo pygmaeus GN=NDUFS4 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.434e-22
Identity = 50/110 (45.45%), Postives = 70/110 (63.64%), Query Frame = 2
Query:  143 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKW 469
            +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST DP +N+    L+F +KE A  FAE++GW Y V +   P  K KSY  NF W
Sbjct:   60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNM---VLTFRTKEDAVSFAEKNGWSYDVEERKVPKPKSKSYGANFSW 166          
BLAST of CN185335 vs. ExPASy Swiss-Prot
Match: NDUS4_PONAB (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Pongo abelii GN=NDUFS4 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.434e-22
Identity = 50/110 (45.45%), Postives = 70/110 (63.64%), Query Frame = 2
Query:  143 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKW 469
            +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST DP +N+    L+F +KE A  FAE++GW Y V +   P  K KSY  NF W
Sbjct:   60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNM---VLTFRTKEDAVSFAEKNGWSYDVEERKVPKPKSKSYGANFSW 166          
BLAST of CN185335 vs. ExPASy Swiss-Prot
Match: NDUS4_BOVIN (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Bos taurus GN=NDUFS4 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.232e-21
Identity = 49/110 (44.55%), Postives = 69/110 (62.73%), Query Frame = 2
Query:  143 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKW 469
            +I  ++G+PEEH++ R+  I+ PAR   Q G     +WK+ F + ++WENPLMGW ST DP +N+    L+F +KE A  FAE++GW Y V +   P  K KSY  NF W
Sbjct:   60 DITTITGVPEEHIKTRKARIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNL---VLTFSTKEDAVAFAEKNGWSYDVEERKVPKPKSKSYGANFSW 166          
BLAST of CN185335 vs. ExPASy Swiss-Prot
Match: NDUS4_GECJA (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Gecko japonicus GN=NDUFS4 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.609e-21
Identity = 49/110 (44.55%), Postives = 71/110 (64.55%), Query Frame = 2
Query:  143 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKW 469
            +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW+ST DP +N+    L+F +KE A  FAE++GW + V +   P  K KSY  NF W
Sbjct:   60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWSSTADPLSNL---VLTFSTKEDAVAFAEKNGWSFDVEERKVPKPKSKSYGANFSW 166          
BLAST of CN185335 vs. ExPASy Swiss-Prot
Match: NDUS4_PANTR (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Pan troglodytes GN=NDUFS4 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.682e-21
Identity = 48/110 (43.64%), Postives = 69/110 (62.73%), Query Frame = 2
Query:  143 EIGMVSGIPEEHLR-RRVVIYTPARTATQQGSGKLGRWKINFMSTQKWENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNFKW 469
            +I  ++G+PEEH++ R+V I+ PAR   Q G     +WK+ F + ++WENPLMGW ST DP +N+    L+  +KE A  FAE++GW Y + +   P  K KSY  NF W
Sbjct:   60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNM---VLTXSTKEDAVSFAEKNGWSYDIEERKVPKPKSKSYGANFSW 166          
BLAST of CN185335 vs. ExPASy Swiss-Prot
Match: NDUS4_NEUCR (NADH-ubiquinone oxidoreductase 21 kDa subunit, mitochondrial OS=Neurospora crassa GN=nuo-21 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 7.240e-14
Identity = 44/107 (41.12%), Postives = 67/107 (62.62%), Query Frame = 2
Query:  152 MVSGIPEEHLRRRVVIYTPARTATQQGSGKLGRWKINFMSTQK---WENPLMGWTSTGDPYANVGDAGLSFDSKEAAREFAERHGWEYVVRKPHRPLLKVKSYADNF 463
            +VSG P E   R V IY P++ ATQ  + ++  W++++   +K   WEN LMGW S+GD    V    L+F +KE A +FAE+ G+EY V++P++     K+YA+NF
Sbjct:  103 VVSGAPMELQARTVRIYLPSKPATQSSNSRV-LWRMDWDVLEKGHRWENELMGWQSSGD---FVQGTHLTFRTKEEAIQFAEKQGYEYFVQEPNQRHFTPKAYANNF 205          
The following BLAST results are available for this feature:
BLAST of CN185335 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
NDUS4_RAT3.242e-2242.40NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS4_MOUSE5.531e-2245.45NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS4_HUMAN7.223e-2244.55NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS4_GORGO7.223e-2244.55NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS4_PONPY9.434e-2245.45NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS4_PONAB9.434e-2245.45NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS4_BOVIN1.232e-2144.55NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS4_GECJA1.609e-2144.55NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS4_PANTR4.682e-2143.64NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS4_NEUCR7.240e-1441.12NADH-ubiquinone oxidoreductase 21 kDa subunit, mit... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001C21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001C21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185335 ID=CN185335; Name=CN185335; organism=Citrus sinensis; type=EST; length=655bp
AGTGAGCAGTCCAATAACCTTTTGTTCGAAGATGGCGCACTCTCTGCAGC
GAATATGGAGCCACGGCCGCACTGTGCGAGGCACCGTGTGCCCATTCTCA
AGAGCGTTCTCGGCAGATGCGTTGGTTGAGGTCAAGCCGGGCGAGATCGG
CATGGTCTCTGGGATCCCCGAAGAGCATCTTCGTAGAAGAGTGGTGATTT
ACACACCTGCTAGAACTGCTACTCAACAAGGATCTGGAAAACTTGGAAGG
TGGAAAATCAATTTTATGTCAACACAAAAGTGGGAAAATCCATTGATGGG
TTGGACATCCACAGGGGATCCATATGCCAATGTTGGTGATGCAGGATTGA
GTTTTGACAGCAAAGAGGCTGCAAGAGAATTTGCTGAGAGACATGGTTGG
GAATATGTGGTGAGGAAGCCCCACAGACCATTGCTGAAGGTGAAGTCATA
TGCAGACAACTTTAAGTGGAAGGGTCCTCCCAAAACAGATGGAAACTGAT
TGTGTTGTCTCACCTGCATTGTTACCATAAAACAAGTCATGGGACTGAGG
GTTGATTTCTTTTGCTGCACATTCTCTGCAAATGGCAGAATGTAGCTCTT
TGTTGAATTTGTTGATTATAATAAAACGGGACATGTGGGTTGTAACCCTT
TGCTC
back to top