CN185332

Overview
NameCN185332
Unique NameCN185332
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185332_ssr25 microsatellite CN185332_ssr25:25..40. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8387 contig Csv1_Contig8387:138..849. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185332 vs. ExPASy Swiss-Prot
Match: SUBL_ARATH (Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.257e-43
Identity = 90/162 (55.56%), Postives = 114/162 (70.37%), Query Frame = -3
Query:  228 PVAALDPGLVYDATVQDYLDFLCALDYSSFQIKQATNRDFACLSSKTYSLGDVNYPSFSVPFETASGTWGGVGATSTVKYTRTLTNVGTPTTYMVSVSSQSTSVKILVEPESLSFSRQYEKKSYVVTFTA-SSMPSGTTSFARLQWSDGKHVVGSPIAFSWT 710
            P  A +PGL+YD T +DYL FLCAL+Y+S QI+  + R++ C  SK+YS+ D+NYPSF+V  +       GVGA    KYTRT+T+VG   TY V V+S++T VKI VEP  L+F    EKKSY VTFT  SS PSG+ SF  ++WSDGKHVVGSP+A SWT
Sbjct:  606 PTTATNPGLIYDLTTEDYLGFLCALNYTSPQIRSVSRRNYTCDPSKSYSVADLNYPSFAVNVD-------GVGA---YKYTRTVTSVGGAGTYSVKVTSETTGVKISVEPAVLNFKEANEKKSYTVTFTVDSSKPSGSNSFGSIEWSDGKHVVGSPVAISWT 757          
BLAST of CN185332 vs. ExPASy Swiss-Prot
Match: CUCM1_CUCME (Cucumisin OS=Cucumis melo PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.779e-17
Identity = 55/159 (34.59%), Postives = 79/159 (49.69%), Query Frame = -3
Query:  234 PVAALDPGLVYDATVQDYLDFLCALDYSSFQIKQATNRDFACLSSKTYSLGDVNYPSFSVPFETASGTWGGVGATSTVKYTRTLTNVGTPTTYMVSVSSQSTSVKILVEPESLSFSRQYEKKSYVVTFTASSMPSGTTSFARLQWSDGKHVVGSPIAFS 710
            P+ A+ PGLVYDA   DY+ FLC   Y++  +++ T    AC S  T  + D+NYPSF +    +         T    + RTLT+V    +   ++ S    + I V P  LSF+   ++KS+ +T   S    G    A L WSDG H V SPI  +
Sbjct:  580 PLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQ--------TFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGSI--KGFVVSASLVWSDGVHYVRSPITIT 728          
BLAST of CN185332 vs. ExPASy Swiss-Prot
Match: XSP1_ARATH (Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 53/159 (33.33%), Postives = 74/159 (46.54%), Query Frame = -3
Query:  243 PVAALDPGLVYDATVQDYLDFLCALDYSSFQIKQATNRDFACLSSKTYSLG--DVNYPSFSVPFETASGTWGGVGATSTVK-YTRTLTNVGTPTTYMVSVSSQSTSVKILVEPESLSFSRQYEKKSYVVTFTASSMPSGTTSFARLQWSDGKHVVGSPI 710
            P  A  PGLVYD     Y+ FLC   Y++  +           SS    LG   +NYP+  +   +A         TST+  + R +TNVG P++   +       V+I VEP+SLSFS+  +K+S+ V   A  M  G      L W   +H V SPI
Sbjct:  591 PRRAASPGLVYDMDDISYVQFLCGEGYNATTLAPLVGTRSVSCSSIVPGLGHDSLNYPTIQLTLRSAK--------TSTLAVFRRRVTNVGPPSSVYTATVRAPKGVEITVEPQSLSFSKASQKRSFKVVVKAKQMTPGKIVSGLLVWKSPRHSVRSPI 741          
The following BLAST results are available for this feature:
BLAST of CN185332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SUBL_ARATH2.257e-4355.56Subtilisin-like protease OS=Arabidopsis thaliana G... [more]
CUCM1_CUCME2.779e-1734.59Cucumisin OS=Cucumis melo PE=1 SV=1[more]
XSP1_ARATH1.686e-1433.33Xylem serine proteinase 1 OS=Arabidopsis thaliana ... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001C18_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001C18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185332 ID=CN185332; Name=CN185332; organism=Citrus sinensis; type=EST; length=712bp
ATGTTTTTTTTTATGTACGGTTGTTTTATTTATTTATTTATTCCTTTTCA
ATCTACTGATTACAAAAGCTAGTGGCTGTGCTTACTCAGTTGCTGGAACA
CAAGCAAAGGTGCCACACAAATGTCCAATAGACTGAGTGAAGCACTATTT
AAGTCTGGGACTTTGATTCTGGGACTTTGTGGCCTATATTTAGTTATTAG
ACCAATTATTAAATGCTACCATGATCATGTCCAGCTGAAAGCTATTGGAC
TTCCAACCACATGTTTCCCATCAGACCACTGGAGACGAGCAAAGCTGGTA
GTACCAGACGGCATAGAACTAGCCGTGAATGTCACCACATAACTCTTTTT
CTCATATTGTCTACTGAAGCTCAGTGATTCTGGTTCAACTAAGATCTTCA
CTGACGTAGATTGTGAAGACACAGATACCATGTATGTCGTCGGAGTGCCC
ACATTTGTTAGAGTCCTAGTGTATTTCACAGTGCTTGTTGCGCCAACACC
ACCCCATGTACCTGATGCTGTTTCAAATGGAACAGAGAAAGATGGGTAAT
TAACATCACCCAAGCTGTATGTTTTGCTTGACAGGCAGGCGAAGTCTCTG
TTTGTAGCTTGCTTAATCTGAAACGAGCTGTAGTCTAAGGCACAGAGGAA
GTCTAGGTAGTCTTGGACAGTGGCATCATAGACAAGGCCAGGATCAAGAG
CTGCTACAGGAT
back to top