CN185330

Overview
NameCN185330
Unique NameCN185330
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185330_ssr1 microsatellite CN185330_ssr1:1..10. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11510 contig Csv1_Contig11510:77..725. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN185330 vs. ExPASy Swiss-Prot
Match: NCPR_CATRO (NADPH--cytochrome P450 reductase OS=Catharanthus roseus GN=CPR PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.590e-40
Identity = 91/186 (48.92%), Postives = 109/186 (58.60%), Query Frame = 2 
Query:  104 KVSPFDLMSAIIRGG--EXXXXXXXXXXXXXXXXXXXLDNKEFVMILTTSIAVLIGCVVVFIXXXXXXXXXXXXXXXXXXXXXXXXXXX--DDGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVXXXXXXXXXXXXXXKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEHKEGGEW 649
            K+SPF+LMSAI++G   +                   L+NKE VMILTTS+AVLIGCVVV I                             D+GK+K TIFFGTQTGTAEGFAKALA+EA+ARY+KA+ KV+              K +KE + FF LATYGDGEPTDNAARFYKWF E  + G+W
Sbjct:    7 KLSPFELMSAILKGAKLDGSNSSDSGVAVSPAVMAMLLENKELVMILTTSVAVLIGCVVVLIWRRSSGSGKKVVEPPKLIVPKSVVEPEEIDEGKKKFTIFFGTQTGTAEGFAKALAEEAKARYEKAVIKVIDIDDYAADDEEYEEKFRKETLAFFILATYGDGEPTDNAARFYKWFVEGNDRGDW 192
[Close]
BLAST of CN185330 vs. ExPASy Swiss-Prot
Match: NCPR_PHAAU (NADPH--cytochrome P450 reductase OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.021e-28
Identity = 74/144 (51.39%), Postives = 84/144 (58.33%), Query Frame = 2 
Query:  227 VMILTTSIAVLIGCVVVFIXXXXXXXXXXXXXXXXXXXXXXXXXXXD--DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVXXXXXXXXXXXXXXKLKKENIVFFFLATYGDGEPTDNAARFYKWFTEHK-EGGEW 649
            ++I TTS AV++G +V                              D   GK KVTIFFGTQTGTAEGFAKALA+E +ARY+KA  KVV              KLKKE++VFF LATYGDGEP DNAARFYKWFTE K E G W
Sbjct:   28 LLIATTSAAVVVGLLVFLWKKSSDRSKEVKPVVVPRDLMMEEEEEVDVAAGKTKVTIFFGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAADDDLYEEKLKKESLVFFMLATYGDGEPIDNAARFYKWFTEGKDERGIW 171
The following BLAST results are available for this feature:
BLAST of CN185330 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NCPR_CATRO2.590e-4048.92NADPH--cytochrome P450 reductase OS=Catharanthus r... [more]
NCPR_PHAAU1.021e-2851.39NADPH--cytochrome P450 reductase OS=Phaseolus aure... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001C17_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001C17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185330 ID=CN185330; Name=CN185330; organism=Citrus sinensis; type=EST; length=649bp
GAGAGAGAGAGGGGTCTTCTCTTCTCCCGTTCCATTTCCACTCGCTCTCC
GACAAATTCATACTATGCAATCATCATCGTCGTCATCAGAATCAGGCACG
ATGAAAGTATCGCCGTTCGACTTGATGTCCGCGATCATTAGAGGTGGCGA
GGTCGATCCGTCCAACGTGTCGTCGTCCGGTTCAGGAGTTGAAGTTGCTT
CGATTGTGCTCGACAATAAGGAGTTCGTTATGATCTTGACCACGTCTATT
GCCGTCCTCATCGGCTGCGTCGTCGTTTTTATTTTGCGGAGATCTAGTAG
CTCCAAGCCAAAGAAGCTTGAGCCGCTCAAGCCTTTGGTTGTTAAAGAGC
CGGAAGTTGAGGTCGATGATGGAAAGCAGAAGGTCACTATCTTCTTCGGT
ACTCAAACTGGCACAGCTGAAGGATTTGCTAAGGCTTTAGCTGACGAAGC
CAGGGCTCGATATGATAAGGCCATTTTTAAAGTCGTCGATATTGATGATT
ACGCCGACGAGGAAGATGAATATGAAGAGAAATTGAAGAAAGAGAATATA
GTATTTTTCTTCTTGGCTACATATGGAGATGGTGAGCCAACCGACAATGC
AGCTAGGTTCTATAAATGGTTTACGGAGCACAAAGAGGGAGGGGAGTGG
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