CN185326

Overview
NameCN185326
Unique NameCN185326
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length810
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN185326 vs. ExPASy Swiss-Prot
Match: AL121_ARATH (Delta-1-pyrroline-5-carboxylate dehydrogenase 12A1, mitochondrial OS=Arabidopsis thaliana GN=ALDH12A1 PE=2 SV=1)

HSP 1 Score: 301.597 bits (771), Expect = 3.386e-81
Identity = 143/162 (88.27%), Postives = 154/162 (95.06%), Query Frame = -3 
Query:  326 SKLLFGGEELKNHSIPSIYGALKPTAVFVPLEEILKDGN-YELVTREIFGPFQIVTEYKQDQLPLVLNALERMHAHLTAAVVSNDPLFLQEVIGNTVNGTTYAGLRARTTGAPQNHWFGPSGDPRGAGIGTPEAIKLVWSSHREIIYDYGPVPGNWEIPPST 808
            SKLLFGG+ELKNHSIPSIYGAL+PTAV+VP+EEILKD   YELVT+EIFGPFQIVTEYK+DQLPLVL ALERMHAHLTAAVVSNDP+FLQEVIGN+VNGTTYAGLR RTTGAPQNHWFGP+GDPRGAGIGTPEAIKLVWS HRE+IYDYGPVP  WE+PPST
Sbjct:  395 SKLLFGGKELKNHSIPSIYGALEPTAVYVPIEEILKDNKTYELVTKEIFGPFQIVTEYKKDQLPLVLEALERMHAHLTAAVVSNDPIFLQEVIGNSVNGTTYAGLRGRTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHREVIYDYGPVPQGWELPPST 556
[Close]
BLAST of CN185326 vs. ExPASy Swiss-Prot
Match: ALDH_LINUS (Probable aldehyde dehydrogenase OS=Linum usitatissimum GN=FIS1 PE=2 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 2.054e-78
Identity = 139/161 (86.34%), Postives = 150/161 (93.17%), Query Frame = -3 
Query:  326 SKLLFGGEELKNHSIPSIYGALKPTAVFVPLEEILKDGNYELVTREIFGPFQIVTEYKQDQLPLVLNALERMHAHLTAAVVSNDPLFLQEVIGNTVNGTTYAGLRARTTGAPQNHWFGPSGDPRGAGIGTPEAIKLVWSSHREIIYDYGPVPGNWEIPPST 808
            +KLLFGG+ L+NH+IPSIYGA+KPTAV+VPLEEILK  NYELVT+EIFGPFQ+VTEYK  QLP+VL ALERMHAHLTAAVVSND LFLQEVIGNTVNGTTYAGLRARTTGAPQNHWFGP+GDPRGAGIGTPEAIKLVWS HREIIYD GPV  +WEIPPST
Sbjct:  391 AKLLFGGKPLENHTIPSIYGAVKPTAVYVPLEEILKVSNYELVTKEIFGPFQVVTEYKNSQLPMVLEALERMHAHLTAAVVSNDQLFLQEVIGNTVNGTTYAGLRARTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHREIIYDIGPVSHHWEIPPST 551
The following BLAST results are available for this feature:
BLAST of CN185326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
AL121_ARATH3.386e-8188.27Delta-1-pyrroline-5-carboxylate dehydrogenase 12A1... [more]
ALDH_LINUS2.054e-7886.34Probable aldehyde dehydrogenase OS=Linum usitatiss... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001C15_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001C15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185326 ID=CN185326; Name=CN185326; organism=Citrus sinensis; type=EST; length=810bp
TTTTTTTTTTTTTTTTTCCAGAATTTGCCATTATATGGAATCAATTATTG
GCGATAAGCATATACCATTCATAACATAAAATTAAAACTCATTTTTTGCT
GCATGCTCATGCATTCACCACAGGAGATGAGGCCGAAAAGAGTGGCATAA
TTCTCAGTATCAATTTGTGAAATACAAAATTGCCCATATTTTTTATTTCA
TAAAACTAGCTAGGATAACTAAGGAATGAGAAATACTAAGCTGCTATCAG
ATGATGCATTATATTGGGGATCATAAACTCTCTTCAGGATTAATCTTGAT
GCCTTCTAACCAATGGGAATCTTCAAGTAGATGGTGGAATCTCCCAATTC
CCTGGTACAGGACCATAATCGTATATGATTTCTCTATGGGAAGACCAAAC
AAGTTTTATTGCTTCCGGGGTTCCAATTCCTGCACCCCTCGGATCTCCAG
ATGGTCCGAACCAGTGATTCTGTGGAGCTCCAGTTGTTCTTGCTCTTAAT
CCAGCATATGTAGTGCCATTCACTGTATTCCCAATCACTTCCTGTAAAAA
GAGTGGATCATTTGAAACCACTGCAGCTGTTAAATGTGCATGCATCCTCT
CCAAAGCATTCAACACTAGAGGAAGTTGATCTTGCTTATACTCGGTGACA
ATCTGAAAAGGTCCAAAGATTTCTCTTGTTACAAGTTCATAATTTCCATC
TTTCAGAATTTCTTCAAGTGGCACAAAGACGGCTGTTGGTTTTAGAGCAC
CATATATGGATGGGATGGAATGGTTCTTCAACTCTTCACCACCAAAGAGT
AACTTTGAAC
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