CN185323

Overview
NameCN185323
Unique NameCN185323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2473 contig Csv1_Contig2473:1..743. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185323 vs. ExPASy Swiss-Prot
Match: AL121_ARATH (Delta-1-pyrroline-5-carboxylate dehydrogenase 12A1, mitochondrial OS=Arabidopsis thaliana GN=ALDH12A1 PE=2 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 1.040e-94
Identity = 168/224 (75.00%), Postives = 190/224 (84.82%), Query Frame = 1
Query:   79 MYRVVASRAFRAGA---PQKAFGCWFNLSRSAHTLPFATLEADEISGSKPGEVYNLVQGKWTGSSNWSTLLDPLNGEQFIRIAEVGEKEIQPYVESLSKCPKHGLHNPFKSPERYLLYGDISTKAAHMLSLPKVSNFFTRLIQRVSPKSYQQALSEVQVTQKFLENFCGDQVRFLARSFAVPGNHLGQQSHGYRWPYGPVAIITPFNFPLEIPLLQLMGALYMG 741
            MYRV ASRA RA +             LSR  H++PFAT++A+E+SG+ P EV + VQGKW GSSN +TLLDPLNGE FI++AEV E   QP+V+SLS+CPKHGLHNPFKSPERYLLYGDISTKAAHML+LPKV++FF RLIQRV+PKSYQQA  EV VT+KFLENFCGDQVRFLARSFA+PGNHLGQQSHGYRWPYGPV I+TPFNFPLEIPLLQLMGALYMG
Sbjct:    1 MYRVFASRALRAKSLCDKSSTSLASLTLSRLNHSIPFATVDAEELSGAHPAEVQSFVQGKWIGSSNHNTLLDPLNGEPFIKVAEVDESGTQPFVDSLSQCPKHGLHNPFKSPERYLLYGDISTKAAHMLALPKVADFFARLIQRVAPKSYQQAAGEVFVTRKFLENFCGDQVRFLARSFAIPGNHLGQQSHGYRWPYGPVTIVTPFNFPLEIPLLQLMGALYMG 224          
BLAST of CN185323 vs. ExPASy Swiss-Prot
Match: ALDH_LINUS (Probable aldehyde dehydrogenase OS=Linum usitatissimum GN=FIS1 PE=2 SV=1)

HSP 1 Score: 342.043 bits (876), Expect = 1.961e-93
Identity = 164/221 (74.21%), Postives = 187/221 (84.62%), Query Frame = 1
Query:   79 MYRVVASRAFRAGAPQKAFGCWFNLSRSAHTLPFATLEADEISGSKPGEVYNLVQGKWTGSSNWSTLLDPLNGEQFIRIAEVGEKEIQPYVESLSKCPKHGLHNPFKSPERYLLYGDISTKAAHMLSLPKVSNFFTRLIQRVSPKSYQQALSEVQVTQKFLENFCGDQVRFLARSFAVPGNHLGQQSHGYRWPYGPVAIITPFNFPLEIPLLQLMGALYMG 741
            MYR + +R  R     +     F   R +H+LPFAT++A+E+SG+KP EV NLVQG W GSS+W T++DPLNGE FI++AEV E EI+P+VESLSKCPKHGLHNPFKSPERYLLYGDISTKA HMLS+PKVS FF RLIQRV+PKSY QAL EVQVTQKF ENF GDQVRFLARSF VPGNHLGQQS+G+RWP+GPVAIITPFNFPLEIP+LQLMGALYMG
Sbjct:    1 MYRPLVARLLRDSVATRKGSSHF-ARRFSHSLPFATVDAEELSGAKPAEVLNLVQGNWGGSSSWHTVVDPLNGEPFIKVAEVDETEIKPFVESLSKCPKHGLHNPFKSPERYLLYGDISTKAGHMLSIPKVSEFFARLIQRVAPKSYHQALGEVQVTQKFFENFTGDQVRFLARSFGVPGNHLGQQSNGFRWPFGPVAIITPFNFPLEIPVLQLMGALYMG 220          
The following BLAST results are available for this feature:
BLAST of CN185323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
AL121_ARATH1.040e-9475.00Delta-1-pyrroline-5-carboxylate dehydrogenase 12A1... [more]
ALDH_LINUS1.961e-9374.21Probable aldehyde dehydrogenase OS=Linum usitatiss... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001C13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001C13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185323 ID=CN185323; Name=CN185323; organism=Citrus sinensis; type=EST; length=743bp
CGATCTTCTGTTACTCTATAGAAGTCTAATACTCTCTCTCGATTCAGTTC
TGCATCAGTCTCGGCCGCCCAAATCGCCATGTATAGAGTTGTAGCCAGCA
GAGCATTCAGAGCCGGAGCTCCTCAAAAGGCTTTTGGCTGTTGGTTCAAT
CTCTCTAGATCAGCTCATACTTTACCTTTTGCTACATTAGAGGCAGACGA
AATATCAGGTTCTAAACCTGGTGAAGTGTACAATTTGGTGCAGGGTAAGT
GGACAGGATCATCAAATTGGAGTACGTTATTAGATCCATTAAATGGAGAA
CAATTCATTAGAATTGCTGAAGTGGGTGAAAAAGAAATCCAGCCATATGT
AGAGAGCTTGTCCAAGTGCCCTAAACATGGTCTGCACAATCCCTTTAAAT
CACCAGAGAGATATCTTTTATATGGAGATATATCTACAAAGGCAGCCCAC
ATGCTTTCACTGCCAAAGGTCTCCAATTTCTTCACTAGGTTGATTCAGAG
GGTTTCTCCTAAGAGTTATCAGCAGGCTCTCAGCGAGGTTCAAGTTACAC
AGAAATTCCTTGAGAATTTCTGTGGCGATCAGGTCCGATTTTTAGCAAGA
TCGTTCGCTGTTCCTGGAAATCACCTTGGACAGCAGAGCCATGGTTATCG
TTGGCCTTATGGTCCTGTTGCAATTATTACTCCCTTTAATTTTCCACTGG
AGATTCCTTTACTTCAGTTGATGGGTGCGCTCTATATGGGTAA
back to top