CN185319

Overview
NameCN185319
Unique NameCN185319
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6365 contig Csv1_Contig6365:44..806. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185319 vs. ExPASy Swiss-Prot
Match: BH004_ARATH (Transcription factor MYC4 OS=Arabidopsis thaliana GN=BHLH4 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 9.757e-47
Identity = 97/148 (65.54%), Postives = 119/148 (80.41%), Query Frame = -3
Query:  288 KASLLGDAISYINELRTKLQSAESDKEDLQKELASVKKELAGGGKDSHSGPSTSDQDLKMSNHASKLIDLDIEVKIIGWDAMIRIQSSKKNHPAAKLMEALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLAAKVGD 731
            KASLLGDAISYI+EL++KLQ AESDKE+LQK++  + KE AG  K S       +Q+      +S LI+++++VKIIGWDAMIRIQ SK+NHP AK MEALKELDLEVNHAS+SVVNDLMIQQATVKMG++F+TQ+QLK  L  KVG+
Sbjct:  447 KASLLGDAISYISELKSKLQKAESDKEELQKQIDVMNKE-AGNAKSSVKDRKCLNQE------SSVLIEMEVDVKIIGWDAMIRIQCSKRNHPGAKFMEALKELDLEVNHASLSVVNDLMIQQATVKMGNQFFTQDQLKVALTEKVGE 587          

HSP 2 Score: 25.7942 bits (55), Expect = 9.757e-47
Identity = 11/12 (91.67%), Postives = 12/12 (100.00%), Query Frame = -2
Query:  727 AVVPNVSKMDKS 762
            AVVPNVSKMDK+
Sbjct:  437 AVVPNVSKMDKA 448          
BLAST of CN185319 vs. ExPASy Swiss-Prot
Match: ATR2_ARATH (Transcription factor ATR2 OS=Arabidopsis thaliana GN=ATR2 PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.539e-44
Identity = 89/148 (60.14%), Postives = 111/148 (75.00%), Query Frame = -3
Query:  288 KASLLGDAISYINELRTKLQSAESDKEDLQKELASVKKELAGGGKDSHSGPSTSDQDLKMSNHASKLIDLDIEVKIIGWDAMIRIQSSKKNHPAAKLMEALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLAAKVGD 731
            KASLLGDAISYINEL++KLQ AESDKE++QK+L  + KE   G      G    ++     +  +  I+++I+VKIIGWD MIR+Q  KK+HP A+ MEALKELDLEVNHAS+SVVNDLMIQQATVKMGS+F+  +QLK  L  KVG+
Sbjct:  446 KASLLGDAISYINELKSKLQQAESDKEEIQKKLDGMSKE---GNNGKGCGSRAKERKSSNQDSTASSIEMEIDVKIIGWDVMIRVQCGKKDHPGARFMEALKELDLEVNHASLSVVNDLMIQQATVKMGSQFFNHDQLKVALMTKVGE 590          

HSP 2 Score: 25.7942 bits (55), Expect = 2.539e-44
Identity = 11/12 (91.67%), Postives = 12/12 (100.00%), Query Frame = -2
Query:  727 AVVPNVSKMDKS 762
            AVVPNVSKMDK+
Sbjct:  436 AVVPNVSKMDKA 447          
BLAST of CN185319 vs. ExPASy Swiss-Prot
Match: RAP1_ARATH (Transcription factor MYC2 OS=Arabidopsis thaliana GN=RAP1 PE=1 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 7.927e-43
Identity = 89/147 (60.54%), Postives = 112/147 (76.19%), Query Frame = -3
Query:  291 KASLLGDAISYINELRTKLQSAESDKEDLQKELASVKKELAGGGKDSHSGPSTSDQDLKMSNHASKLIDLDIEVKIIGWDAMIRIQSSKKNHPAAKLMEALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLAAKVG 731
            KASLLGDAI+YINEL++K+   ES+K  ++ +L  VK ELAG    +  G      D+  S  + K + ++IEVKIIGWDAMIR++SSK+NHPAA+LM AL +L+LEVNHASMSVVNDLMIQQATVKMG R YTQEQL+  L +K+G
Sbjct:  483 KASLLGDAIAYINELKSKVVKTESEKLQIKNQLEEVKLELAGRKASASGG------DMSSSCSSIKPVGMEIEVKIIGWDAMIRVESSKRNHPAARLMSALMDLELEVNHASMSVVNDLMIQQATVKMGFRIYTQEQLRASLISKIG 623          

HSP 2 Score: 25.7942 bits (55), Expect = 7.927e-43
Identity = 11/12 (91.67%), Postives = 12/12 (100.00%), Query Frame = -2
Query:  727 AVVPNVSKMDKS 762
            AVVPNVSKMDK+
Sbjct:  473 AVVPNVSKMDKA 484          
BLAST of CN185319 vs. ExPASy Swiss-Prot
Match: BH028_ARATH (Transcription factor bHLH28 OS=Arabidopsis thaliana GN=BHLH28 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.124e-27
Identity = 69/147 (46.94%), Postives = 100/147 (68.03%), Query Frame = -3
Query:  294 KASLLGDAISYINELRTKLQSAESDKEDLQKELASVKKELAGGGKDSHSGPSTSDQDLKMSNHASKLIDLDIEVKII-GWDAMIRIQSSKKNHPAAKLMEALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVLAAKV 731
            K SLL DA+ YINEL++K ++ E +K  ++ +   +K E+AG     ++ PS    + K S        + IEVKI+   DAM+R++S K +HP A+LM AL +L+LEVNHAS+SV+NDLMIQQA VKMG R Y QE+L+++L +K+
Sbjct:  374 KTSLLEDAVCYINELKSKAENVELEKHAIEIQFNELK-EIAG---QRNAIPSVCKYEEKASEM------MKIEVKIMESDDAMVRVESRKDHHPGARLMNALMDLELEVNHASISVMNDLMIQQANVKMGLRIYKQEELRDLLMSKI 510          

HSP 2 Score: 25.7942 bits (55), Expect = 1.124e-27
Identity = 11/12 (91.67%), Postives = 12/12 (100.00%), Query Frame = -2
Query:  727 AVVPNVSKMDKS 762
            AVVPNVSKMDK+
Sbjct:  364 AVVPNVSKMDKT 375          
BLAST of CN185319 vs. ExPASy Swiss-Prot
Match: BH014_ARATH (Transcription factor bHLH14 OS=Arabidopsis thaliana GN=BHLH14 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 9.912e-18
Identity = 51/148 (34.46%), Postives = 85/148 (57.43%), Query Frame = -3
Query:  306 RWTKASLLGDAISYINELRTKLQSAESDKEDLQKELASVKKELAGGGKDSHSGPSTSDQDLKMSNHASKL---IDLDIEVKIIGWDAMIRIQSSKKNHPAAKLMEALKELDLEVNHASMSVVNDLMIQQATVKMGSRFYTQEQLKNVL 740
            R  KASLL DA+SYI  L++K+       +DL+ E+  +K        +S S  S S  + +++   SK     DL+++VKI+G +A+IR+Q+   NHP + LM AL E+D  V HA+ S ++ +M+Q   V +     ++++L+  L
Sbjct:  277 RMDKASLLSDAVSYIESLKSKI-------DDLETEIKKMKMTETDKLDNSSSNTSPSSVEYQVNQKPSKSNRGSDLEVQVKIVGEEAIIRVQTENVNHPTSALMSALMEMDCRVQHANASRLSQVMVQDVVVLVPEGLRSEDRLRTTL 417          

HSP 2 Score: 21.9422 bits (45), Expect = 9.912e-18
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = -2
Query:  727 AVVPNVSKMDKS 762
            A+VP VS+MDK+
Sbjct:  270 AIVPKVSRMDKA 281          
The following BLAST results are available for this feature:
BLAST of CN185319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
BH004_ARATH9.757e-4765.54Transcription factor MYC4 OS=Arabidopsis thaliana ... [more]
ATR2_ARATH2.539e-4460.14Transcription factor ATR2 OS=Arabidopsis thaliana ... [more]
RAP1_ARATH7.927e-4360.54Transcription factor MYC2 OS=Arabidopsis thaliana ... [more]
BH028_ARATH1.124e-2746.94Transcription factor bHLH28 OS=Arabidopsis thalian... [more]
BH014_ARATH9.912e-1834.46Transcription factor bHLH14 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001C11_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185319 ID=CN185319; Name=CN185319; organism=Citrus sinensis; type=EST; length=763bp
TTTTTTTTTTTTTTTTTCACATCAAAAAAGCTATTTTCACCATTTTGGAG
CCCAAGAATACTCATTCCTTAAACACATACCTCCCACTACTGCTCAATAA
CTCAGCTCCCTTAACATTTTTTAAATCATCTCAAAACTAGAATTACACTA
ACAACTACTAAAGAACAAATAGTAGAACATGAAAATATGCTATATTAGAA
AGCTTTGAGCGCTACCGGGAAGCCTTAAAATGTCCCAGAGCTGAATGCCA
TTAACAATGAAATCCTGATCCCAACTCTTTATTGGGTATCTCCAACTTTG
GCTGCAAGGACGTTCTTTAGCTGCTCCTGCGTGTAAAACCGACTTCCCAT
CTTTACAGTAGCTTGTTGGATCATCAAATCATTCACCACAGACATACTTG
CATGATTCACTTCCAAGTCCAACTCTTTCAAGGCTTCCATTAACTTCGCT
GCAGGATGGTTCTTCTTACTAGATTGAATCCTAATCATCGCATCCCATCC
AATTATCTTCACCTCAATATCCAAGTCAATCAATTTACTAGCATGGTTTG
ACATTTTAAGGTCTTGATCAGATGTTGAAGGCCCTGAATGGGAATCTTTG
CCACCACCTGCCAACTCCTTCTTCACCGATGCCAATTCCTTTTGTAAATC
CTCTTTATCAGACTCTGCACTTTGAAGCTTCGTTCTAAGCTCATTGATAT
AAGAAATTGCATCACCAAGTAGTGAAGCTTTTGTCCATCTTGGAAACATT
AGGCACAACAGCT
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