CN185317

Overview
NameCN185317
Unique NameCN185317
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length878
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1781 contig Csv1_Contig1781:4..881. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185317 vs. ExPASy Swiss-Prot
Match: MSI1_SOLLC (WD-40 repeat-containing protein MSI1 OS=Solanum lycopersicum GN=MSI1 PE=2 SV=1)

HSP 1 Score: 392.119 bits (1006), Expect = 2.168e-108
Identity = 184/205 (89.76%), Postives = 192/205 (93.66%), Query Frame = 1 
Query:  262 MGKDXXXXXXXXXXRLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEXYGLSWSKFKEGHLLSGSDDAQICL 876
            MGKD          RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEP GKDYSVQKMILGTHTSENEPNYLMLAQVQLPL+D+ENDARHYDDDRS+FGGFGCANGKVQIIQQINHDGEVNRARYMPQNPF+IATKTVSAEVYVFDYSKHPSKPPLDGAC+PDLRLRGHSTE YGLSWS+FK+GHLLSGSDD+ ICL
Sbjct:    1 MGKDEDEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPSGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLEDAENDARHYDDDRSEFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPLDGACNPDLRLRGHSTEGYGLSWSQFKQGHLLSGSDDSHICL 205
[Close]
BLAST of CN185317 vs. ExPASy Swiss-Prot
Match: MSI1_ARATH (WD-40 repeat-containing protein MSI1 OS=Arabidopsis thaliana GN=MSI1 PE=1 SV=1)

HSP 1 Score: 383.645 bits (984), Expect = 7.711e-106
Identity = 180/205 (87.80%), Postives = 191/205 (93.17%), Query Frame = 1 
Query:  262 MGKDXXXXXXXXXXRLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEXYGLSWSKFKEGHLLSGSDDAQICL 876
            MGKD          RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEP GKDYSVQKMILGTHTSE+EPNYLMLAQVQLPLDD+E++AR YDDDRS+FGGFGCA GKVQIIQQINHDGEVNRARYMPQNPF+IATKTV+AEVYVFDYSKHPSKPPLDGAC+PDL+LRGHS+E YGLSWSKFK+GHLLSGSDDAQICL
Sbjct:    1 MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPSGKDYSVQKMILGTHTSESEPNYLMLAQVQLPLDDTESEARQYDDDRSEFGGFGCATGKVQIIQQINHDGEVNRARYMPQNPFIIATKTVNAEVYVFDYSKHPSKPPLDGACNPDLKLRGHSSEGYGLSWSKFKQGHLLSGSDDAQICL 205
[Close]
BLAST of CN185317 vs. ExPASy Swiss-Prot
Match: RBBP4_MOUSE (Histone-binding protein RBBP4 OS=Mus musculus GN=Rbbp4 PE=1 SV=4)

HSP 1 Score: 280.411 bits (716), Expect = 9.194e-75
Identity = 128/191 (67.02%), Postives = 156/191 (81.68%), Query Frame = 1 
Query:  304 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEXYGLSWSKFKEGHLLSGSDDAQICL 876
            R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD   P GKD+S+ +++LGTHTS+ E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +INH+GEVNRARYMPQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  E YGLSW+    GHLLS SDD  ICL
Sbjct:   15 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSD-EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICL 204
[Close]
BLAST of CN185317 vs. ExPASy Swiss-Prot
Match: RBBP4_HUMAN (Histone-binding protein RBBP4 OS=Homo sapiens GN=RBBP4 PE=1 SV=3)

HSP 1 Score: 280.411 bits (716), Expect = 9.194e-75
Identity = 128/191 (67.02%), Postives = 156/191 (81.68%), Query Frame = 1 
Query:  304 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEXYGLSWSKFKEGHLLSGSDDAQICL 876
            R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD   P GKD+S+ +++LGTHTS+ E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +INH+GEVNRARYMPQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  E YGLSW+    GHLLS SDD  ICL
Sbjct:   15 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSD-EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICL 204
[Close]
BLAST of CN185317 vs. ExPASy Swiss-Prot
Match: RBBP4_CHICK (Histone-binding protein RBBP4 OS=Gallus gallus GN=RBBP4 PE=1 SV=3)

HSP 1 Score: 280.411 bits (716), Expect = 9.194e-75
Identity = 128/191 (67.02%), Postives = 156/191 (81.68%), Query Frame = 1 
Query:  304 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEXYGLSWSKFKEGHLLSGSDDAQICL 876
            R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD   P GKD+S+ +++LGTHTS+ E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +INH+GEVNRARYMPQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  E YGLSW+    GHLLS SDD  ICL
Sbjct:   15 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSD-EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICL 204
[Close]
BLAST of CN185317 vs. ExPASy Swiss-Prot
Match: RBBP4_BOVIN (Histone-binding protein RBBP4 OS=Bos taurus GN=RBBP4 PE=1 SV=3)

HSP 1 Score: 280.411 bits (716), Expect = 9.194e-75
Identity = 128/191 (67.02%), Postives = 156/191 (81.68%), Query Frame = 1 
Query:  304 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEXYGLSWSKFKEGHLLSGSDDAQICL 876
            R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD   P GKD+S+ +++LGTHTS+ E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +INH+GEVNRARYMPQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  E YGLSW+    GHLLS SDD  ICL
Sbjct:   15 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSD-EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICL 204
[Close]
BLAST of CN185317 vs. ExPASy Swiss-Prot
Match: RBBP7_XENTR (Histone-binding protein RBBP7 OS=Xenopus tropicalis GN=rbbp7 PE=2 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 2.675e-74
Identity = 128/191 (67.02%), Postives = 156/191 (81.68%), Query Frame = 1 
Query:  304 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEXYGLSWSKFKEGHLLSGSDDAQICL 876
            R+INEEYKIWKKNTPFLYDLV+THALEWPSLTV+WLPD   P GKDY++  ++LGTHTS+ E N+L++A+VQ+P DD++ DA HYD ++ +FGGFG  +GK++   +INH+GEVNRARYMPQNP +IATKT SA+V VFDY+KHPSKP   G CSPDLRLRGH  E YGLSW+    GHLLS SDD  +CL
Sbjct:   14 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTVQWLPDVTRPEGKDYALHWLVLGTHTSD-EQNHLVVARVQIPNDDAQFDASHYDSEKGEFGGFGSVSGKIETEIKINHEGEVNRARYMPQNPCIIATKTPSADVLVFDYTKHPSKPDPSGDCSPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCL 203
[Close]
BLAST of CN185317 vs. ExPASy Swiss-Prot
Match: RBBP7_XENLA (Histone-binding protein RBBP7 OS=Xenopus laevis GN=rbbp7 PE=2 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 2.675e-74
Identity = 128/191 (67.02%), Postives = 156/191 (81.68%), Query Frame = 1 
Query:  304 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEXYGLSWSKFKEGHLLSGSDDAQICL 876
            R+INEEYKIWKKNTPFLYDLV+THALEWPSLTV+WLPD   P GKDY++  ++LGTHTS+ E N+L++A+VQ+P DD++ DA HYD ++ +FGGFG  +GK++   +INH+GEVNRARYMPQNP +IATKT SA+V VFDY+KHPSKP   G CSPDLRLRGH  E YGLSW+    GHLLS SDD  +CL
Sbjct:   14 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTVQWLPDVTRPEGKDYALHWLVLGTHTSD-EQNHLVVARVQVPNDDAQFDASHYDSEKGEFGGFGSVSGKIETEIKINHEGEVNRARYMPQNPCIIATKTPSADVLVFDYTKHPSKPDPSGECSPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCL 203
[Close]
BLAST of CN185317 vs. ExPASy Swiss-Prot
Match: RBBP4_PONAB (Histone-binding protein RBBP4 OS=Pongo abelii GN=RBBP4 PE=2 SV=3)

HSP 1 Score: 278.485 bits (711), Expect = 3.494e-74
Identity = 127/191 (66.49%), Postives = 156/191 (81.68%), Query Frame = 1 
Query:  304 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEXYGLSWSKFKEGHLLSGSDDAQICL 876
            R+INEE+KIWKKNTPFLYDLV+THALEWPSLT +WLPD   P GKD+S+ +++LGTHTS+ E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +INH+GEVNRARYMPQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  E YGLSW+    GHLLS SDD  ICL
Sbjct:   15 RVINEEHKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIHRLVLGTHTSD-EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICL 204
[Close]
BLAST of CN185317 vs. ExPASy Swiss-Prot
Match: RBBP4_XENTR (Histone-binding protein RBBP4 OS=Xenopus tropicalis GN=rbbp4 PE=2 SV=3)

HSP 1 Score: 277.715 bits (709), Expect = 5.959e-74
Identity = 127/191 (66.49%), Postives = 156/191 (81.68%), Query Frame = 1 
Query:  304 RLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKDYSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQQINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTEXYGLSWSKFKEGHLLSGSDDAQICL 876
            R+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD   P GKD+S+ +++LGTHTS+ E N+L++A VQLP DD++ DA HYD ++ +FGGFG  +GK++I  +INH+GEVNRARYMPQNP +IATKT S++V VFDY+KHPSKP   G C+PDLRLRGH  E YGLSW+    G+LLS SDD  ICL
Sbjct:   15 RVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPDGKDFSIHRLVLGTHTSD-EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGNLLSASDDHTICL 204
The following BLAST results are available for this feature:
BLAST of CN185317 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
MSI1_SOLLC2.168e-10889.76WD-40 repeat-containing protein MSI1 OS=Solanum ly... [more]
MSI1_ARATH7.711e-10687.80WD-40 repeat-containing protein MSI1 OS=Arabidopsi... [more]
RBBP4_MOUSE9.194e-7567.02Histone-binding protein RBBP4 OS=Mus musculus GN=R... [more]
RBBP4_HUMAN9.194e-7567.02Histone-binding protein RBBP4 OS=Homo sapiens GN=R... [more]
RBBP4_CHICK9.194e-7567.02Histone-binding protein RBBP4 OS=Gallus gallus GN=... [more]
RBBP4_BOVIN9.194e-7567.02Histone-binding protein RBBP4 OS=Bos taurus GN=RBB... [more]
RBBP7_XENTR2.675e-7467.02Histone-binding protein RBBP7 OS=Xenopus tropicali... [more]
RBBP7_XENLA2.675e-7467.02Histone-binding protein RBBP7 OS=Xenopus laevis GN... [more]
RBBP4_PONAB3.494e-7466.49Histone-binding protein RBBP4 OS=Pongo abelii GN=R... [more]
RBBP4_XENTR5.959e-7466.49Histone-binding protein RBBP4 OS=Xenopus tropicali... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001C10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185317 ID=CN185317; Name=CN185317; organism=Citrus sinensis; type=EST; length=878bp
GGGGGGGAAGCTAGCGGGCCCCCTCGCTTCTTTGTCGTTTTTTGGGTTCT
ATTTCGTCGAGAGAAAGGGAGCAATCGGTTCATCTGCTGAGATAGAGGTT
TTGGCGCCGTTTCCTCCTCCGCTCGCCAGTTCCATTTTAATAATAATTTA
CCGTTAGGGGAAGCAAATAATTGTAAAAGCAGATGAATGGAGTTGCATCT
ACCTCAGTTGCAGAAGTAGGACTTTGGCGGCAACAAAACTTAAGAAATTG
AGCGAAGAGCAATGGGAAAAGACGAGGAAGAGATGAGGGGAGAGATAGAA
GAGAGGTTGATAAATGAAGAATACAAGATTTGGAAGAAGAACACTCCGTT
TCTGTATGATCTTGTCATCACACATGCCCTTGAATGGCCTTCTCTGACTG
TTGAGTGGTTGCCTGATAGAGAAGAACCCCCTGGCAAAGACTATTCTGTT
CAGAAAATGATCCTTGGGACACACACATCTGAGAATGAGCCCAACTATCT
CATGCTTGCTCAGGTCCAGCTTCCTCTTGATGACTCAGAGAATGATGCCC
GCCATTACGATGATGACCGCTCTGATTTTGGTGGCTTTGGCTGTGCCAAT
GGCAAGGTGCAAATAATTCAGCAAATAAACCATGATGGAGAGGTTAACCG
GGCCCGTTATATGCCTCAGAATCCATTTCTTATTGCCACGAAGACTGTTA
GTGCTGAGGTCTATGTTTTTGATTATAGCAAACACCCTTCTAAACCTCCT
CTGGATGGTGCATGTAGTCCTGATCTGAGGCTGAGGGGCCATAGCACTGA
ANGATACGGTTTATCGTGGAGCAAGTTCAAGGAAGGTCATCTGTTAAGTG
GTTCTGATGATGCTCAAATATGTTTATG
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