CN185307

Overview
NameCN185307
Unique NameCN185307
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2472 contig Csv1_Contig2472:1..674. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185307 vs. ExPASy Swiss-Prot
Match: SEC22_ARATH (25.3 kDa vesicle transport protein OS=Arabidopsis thaliana GN=SEC22 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.029e-32
Identity = 68/83 (81.93%), Postives = 71/83 (85.54%), Query Frame = 1 
Query:    1 MSKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPXXXXXXXXXXXFWLKTKLW 249
            ++KLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAP           FW+K KLW
Sbjct:  136 IAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVFGVVFLLFWVKNKLW 218
The following BLAST results are available for this feature:
BLAST of CN185307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SEC22_ARATH8.029e-3281.9325.3 kDa vesicle transport protein OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001C04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185307 ID=CN185307; Name=CN185307; organism=Citrus sinensis; type=EST; length=674bp
ATGTCCAAGTTGAATGATGAACTTTATGAGGTCCACCAGATAATGACCCG
GAATGTGCAGGAAGTTCTTGGTGTTGGTGAAAAGTTGGACCAGGTCAGTG
AAATGTCCAGTCGGTTGACATCAGAGTCGCGCATTTATGCTGATAAGGCA
AAAGATTTGAATCGACAGGCTTTAATTCGGAAATGGGCTCCTGTGGCCAT
TGTGTTGGGGGTGGTCTTCGTTGTCTTTTGGCTCAAAACAAAGCTATGGT
GATTCAGTTGCCCTAATGCGGATCTAATAGTTGCACATTTTGCCTGGGTT
CCTCTGCGTCAATGTGGGTTGCTGGTGTTCATGGCTTGGTGTCAACACTT
CAGAGGCATCAGATTTCATCGACACTTGTTTCTGTTCTTGATACAATTTA
ATAGTCCAGTTGGTACGTCATAGGAGTACGGATAAATCTACCCTGTGGAA
TTGTGTAAGAGAGACCCCTTTTAGAATGTTCGATGCGCCAAAGTATATTA
TGTACAAATTTTTGAAAACTCTAGCCTCAGGCCTTTAACGAGGCTTTATT
GATACCATTCCTATGTTCTTTTGCATTACATTCAATTCTTCGAGCTGCTT
GATATTGTCAGAAGCAACTTTTGGTTTTGGAGATGTACTTTCCTAGTGAC
GCATAGTATACCATGCTTTTAAGG
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