CN185306

Overview
NameCN185306
Unique NameCN185306
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2472 contig Csv1_Contig2472:1..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185306 vs. ExPASy Swiss-Prot
Match: SEC22_ARATH (25.3 kDa vesicle transport protein OS=Arabidopsis thaliana GN=SEC22 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.089e-32
Identity = 69/82 (84.15%), Postives = 71/82 (86.59%), Query Frame = -1
Query:  452 AKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPXXXXXXXXXXVFWLKTKLW 697
            AKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAP          +FW+K KLW
Sbjct:  137 AKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSESRIYADKAKDLNRQALIRKWAPVAIVFGVVFLLFWVKNKLW 218          
The following BLAST results are available for this feature:
BLAST of CN185306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SEC22_ARATH5.089e-3284.1525.3 kDa vesicle transport protein OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001C04_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185306 ID=CN185306; Name=CN185306; organism=Citrus sinensis; type=EST; length=700bp
TTTTTTTTTTTTTTTAACATCAAACTTCCTTAAAAGCATGGTATACTACC
CTTCACGCCCCCCTACATCTCCAAAACCAAAAGTTGCCCCTTACAATATC
CAGCAGCTCGAAGAATTGAATGTAATGCAAAAGAACATAGGAATGGTATC
AATAAAGCCTCGTTAAAGGCCTGAGGCTAGAGTTTTCAAAAATTTGGACA
TAATATACTTTGGCGCATCGAACATTCTAAAAGGGGTCTCTCTTACACAA
TTCCACAGGGTAGATTTATCCGTACTCCTATGACGTACCAACTGGACTAT
TAAATTGTATCAAGAACAGAAACAAGTGTCGATGAAATCTGATGCCTCTG
AAGTGTTGACACCAAGCCATGAACACCAGCAACCCACATTGACGCAGAGG
AACCCAGGCAAAATGTGCAACTATTAGATCCGCATTAGGGCAACTGAATC
ACCATAGCTTTGTTTTGAGCCAAAAGACAACGAAGACCACCCCCAACACA
ATGGCCACAGGAGCCCATTTCCGAATTAAAGCCTGTCGATTCAAATCTTT
TGCCTTATCAGCATAAATGCGCGACTCTGATGTCAACCGACTGGACATTT
CACTGACCTGGTCCAACTTTTCACCAACACCAAGAACTTCCTGCACATTC
CGGGTCATTATCTGGTGGACCTCATAAAGTTCATCATTCAACTTGGCCCT
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