CN185299

Overview
NameCN185299
Unique NameCN185299
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4344 contig Csv1_Contig4344:67..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: SDLCA_SOYBN (Dynamin-related protein 12A OS=Glycine max PE=1 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 4.127e-78
Identity = 147/167 (88.02%), Postives = 153/167 (91.62%), Query Frame = 2
Query:  152 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVR 652
            MENLISLVNKIQRACTALGDHGE SALPTLWDSLPAIA            LES+VGKDFLPRGSGIVTRRPLVLQLHK++EGSREYAEFLH+PRKRFTDF AVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIV+DIE+MVR
Sbjct:    1 MENLISLVNKIQRACTALGDHGENSALPTLWDSLPAIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIDEGSREYAEFLHLPRKRFTDFVAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVKDIEDMVR 167          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: SDL5A_SOYBN (Dynamin-related protein 5A OS=Glycine max PE=2 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 5.390e-78
Identity = 146/167 (87.43%), Postives = 153/167 (91.62%), Query Frame = 2
Query:  152 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVR 652
            MENLISLVNKIQRACTALGDHGE SALPTLWDSLPAIA            LES+VGKDFLPRGSGIVTRRPLVLQLHK+EEGSREYAEFLH+PRKRFTDF AVRKEIQDETDRETGRTKQIS+VPIHLSIYSPNVVNLTL+DLPGLTKVAVEGQPDSIV+DIE+MVR
Sbjct:    1 MENLISLVNKIQRACTALGDHGENSALPTLWDSLPAIAVVGGQSSGKSSVLESVVGKDFLPRGSGIVTRRPLVLQLHKIEEGSREYAEFLHLPRKRFTDFVAVRKEIQDETDRETGRTKQISTVPIHLSIYSPNVVNLTLVDLPGLTKVAVEGQPDSIVKDIEDMVR 167          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: DRP1A_ARATH (Dynamin-related protein 1A OS=Arabidopsis thaliana GN=DRP1A PE=1 SV=3)

HSP 1 Score: 280.026 bits (715), Expect = 7.285e-75
Identity = 141/167 (84.43%), Postives = 152/167 (91.02%), Query Frame = 2
Query:  152 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVR 652
            MENLISLVNKIQRACTALGDHG++SALPTLWDSLPAIA            LESIVGKDFLPRGSGIVTRRPLVLQL K+++G+REYAEFLH+PRK+FTDFAAVRKEIQDETDRETGR+K ISSVPIHLSIYSPNVVNLTLIDLPGLTKVAV+GQ DSIV+DIENMVR
Sbjct:    1 MENLISLVNKIQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVR 167          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: DRP1B_ARATH (Dynamin-related protein 1B OS=Arabidopsis thaliana GN=DRP1B PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 2.681e-69
Identity = 131/168 (77.98%), Postives = 151/168 (89.88%), Query Frame = 2
Query:  152 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGR-TKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVR 652
            ME+LI+LVNKIQRACTALGDHGE S+LPTLWDSLPAIA            LES+VGKDFLPRG+GIVTRRPLVLQLH+++EG +EYAEF+H+P+K+FTDFAAVR+EI DETDRETGR +K IS+VPIHLSI+SPNVVNLTL+DLPGLTKVAV+GQP+SIVQDIENMVR
Sbjct:    1 MESLIALVNKIQRACTALGDHGEGSSLPTLWDSLPAIAVVGGQSSGKSSVLESVVGKDFLPRGAGIVTRRPLVLQLHRIDEG-KEYAEFMHLPKKKFTDFAAVRQEISDETDRETGRSSKVISTVPIHLSIFSPNVVNLTLVDLPGLTKVAVDGQPESIVQDIENMVR 167          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: DRP1C_ARATH (Dynamin-related protein 1C OS=Arabidopsis thaliana GN=DRP1C PE=1 SV=2)

HSP 1 Score: 243.432 bits (620), Expect = 7.556e-64
Identity = 121/167 (72.46%), Postives = 140/167 (83.83%), Query Frame = 2
Query:  152 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVR 652
            M++LI L+NKIQRACT LGDHG      +LW++LP +A            LES+VG+DFLPRGSGIVTRRPLVLQLHK E+G+ EYAEFLH P+KRF DFAAVRKEI+DETDR TG++KQIS++PI LSIYSPNVVNLTLIDLPGLTKVAV+GQP+SIVQDIENMVR
Sbjct:    4 MKSLIGLINKIQRACTVLGDHGGEGM--SLWEALPTVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEDGTTEYAEFLHAPKKRFADFAAVRKEIEDETDRITGKSKQISNIPIQLSIYSPNVVNLTLIDLPGLTKVAVDGQPESIVQDIENMVR 168          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: DRP1E_ARATH (Dynamin-related protein 1E OS=Arabidopsis thaliana GN=DRP1E PE=1 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 4.898e-63
Identity = 120/170 (70.59%), Postives = 142/170 (83.53%), Query Frame = 2
Query:  152 MENLISLVNKIQRACTALGDHGE---ASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVR 652
            ME+LI LVN+IQRACT LGD+G    ++A  +LW++LP +A            LESIVG+DFLPRGSGIVTRRPLVLQLHK ++G+ EYAEFLH+P+K+FTDFA VR+EIQDETDR TG+ KQIS VPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQP++I +DIE+MVR
Sbjct:    4 MESLIGLVNRIQRACTVLGDYGGGTGSNAFNSLWEALPTVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTDDGTEEYAEFLHLPKKQFTDFALVRREIQDETDRITGKNKQISPVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPETIAEDIESMVR 173          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: DRP1D_ARATH (Dynamin-related protein 1D OS=Arabidopsis thaliana GN=DRP1D PE=2 SV=2)

HSP 1 Score: 234.958 bits (598), Expect = 2.688e-61
Identity = 116/168 (69.05%), Postives = 142/168 (84.52%), Query Frame = 2
Query:  152 MENLISLVNKIQRACTALGDHG-EASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVR 652
            ME+LI L+N IQRACT +GDHG +++AL +LW++LP++A            LESIVG+DFLPRGSGIVTRRPLVLQLHK E G+ + AEFLH+  K+FT+F+ VRKEI+DETDR TG+ KQISS+PIHLSI+SPNVVNLTLIDLPGLTKVAVEGQP++IV+DIE+MVR
Sbjct:    1 MESLIVLINTIQRACTVVGDHGGDSNALSSLWEALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTENGTEDNAEFLHLTNKKFTNFSLVRKEIEDETDRITGKNKQISSIPIHLSIFSPNVVNLTLIDLPGLTKVAVEGQPETIVEDIESMVR 168          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: DYN_DROME (Dynamin OS=Drosophila melanogaster GN=shi PE=1 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 2.002e-40
Identity = 91/166 (54.82%), Postives = 113/166 (68.07%), Query Frame = 2
Query:  152 MENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMV 649
            M++LI++VNK+Q A T+LG H +          LP IA            LE+ VGKDFLPRGSGIVTRRPL+LQL     G  EY EFLHI  K+F+ F  +RKEI+DETDR TG  K IS++PI+L +YSP+V+NLTLIDLPGLTKVA+  QP  I Q I+ M+
Sbjct:    1 MDSLITIVNKLQDAFTSLGVHMQLD--------LPQIAVVGGQSAGKSSVLENFVGKDFLPRGSGIVTRRPLILQLIN---GVTEYGEFLHIKGKKFSSFDEIRKEIEDETDRVTGSNKGISNIPINLRVYSPHVLNLTLIDLPGLTKVAIGDQPVDIEQQIKQMI 155          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: DYN3_RAT (Dynamin-3 OS=Rattus norvegicus GN=Dnm3 PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 2.072e-37
Identity = 91/167 (54.49%), Postives = 107/167 (64.07%), Query Frame = 2
Query:  149 KMENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMV 649
            +ME LI LVN++Q A +ALG         +    LP IA            LE+ VG+DFLPRGSGIVTRRPLVLQL        EYAEFLH   K+FTDF  VR EI+ ETDR TG  K ISSVPI+L +YSP+V+NLTLIDLPG+TKV V  QP  I   I +M+
Sbjct:    5 EMEELIPLVNRLQDAFSALGQ--------SCLLELPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQL---VTSKAEYAEFLHCKGKKFTDFDEVRHEIEAETDRVTGMNKGISSVPINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIRDMI 160          
BLAST of CN185299 vs. ExPASy Swiss-Prot
Match: DYN3_MOUSE (Dynamin-3 OS=Mus musculus GN=Dnm3 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.706e-37
Identity = 90/167 (53.89%), Postives = 107/167 (64.07%), Query Frame = 2
Query:  149 KMENLISLVNKIQRACTALGDHGEASALPTLWDSLPAIAXXXXXXXXXXXXLESIVGKDFLPRGSGIVTRRPLVLQLHKLEEGSREYAEFLHIPRKRFTDFAAVRKEIQDETDRETGRTKQISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMV 649
            +ME LI LVN++Q A +ALG         +    LP IA            LE+ VG+DFLPRGSGIVTRRPLVLQL        EYAEFLH   K+FTDF  VR EI+ ETDR TG  K ISS+PI+L +YSP+V+NLTLIDLPG+TKV V  QP  I   I +M+
Sbjct:    5 EMEELIPLVNRLQDAFSALGQ--------SCLLELPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQL---VTSKAEYAEFLHCKGKKFTDFDEVRHEIEAETDRVTGMNKGISSIPINLRVYSPHVLNLTLIDLPGITKVPVGDQPPDIEYQIRDMI 160          
The following BLAST results are available for this feature:
BLAST of CN185299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
SDLCA_SOYBN4.127e-7888.02Dynamin-related protein 12A OS=Glycine max PE=1 SV... [more]
SDL5A_SOYBN5.390e-7887.43Dynamin-related protein 5A OS=Glycine max PE=2 SV=... [more]
DRP1A_ARATH7.285e-7584.43Dynamin-related protein 1A OS=Arabidopsis thaliana... [more]
DRP1B_ARATH2.681e-6977.98Dynamin-related protein 1B OS=Arabidopsis thaliana... [more]
DRP1C_ARATH7.556e-6472.46Dynamin-related protein 1C OS=Arabidopsis thaliana... [more]
DRP1E_ARATH4.898e-6370.59Dynamin-related protein 1E OS=Arabidopsis thaliana... [more]
DRP1D_ARATH2.688e-6169.05Dynamin-related protein 1D OS=Arabidopsis thaliana... [more]
DYN_DROME2.002e-4054.82Dynamin OS=Drosophila melanogaster GN=shi PE=1 SV=... [more]
DYN3_RAT2.072e-3754.49Dynamin-3 OS=Rattus norvegicus GN=Dnm3 PE=1 SV=2[more]
DYN3_MOUSE2.706e-3753.89Dynamin-3 OS=Mus musculus GN=Dnm3 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001B24_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001B24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185299 ID=CN185299; Name=CN185299; organism=Citrus sinensis; type=EST; length=652bp
TTGGCGAAGCAAAAACTAATCACACAGATCTCCTCTGACCGTCGCCGTTT
CCAGCATCAGTTGTCAGATCCAGCTGATCTGAATCTGACAGCTGAGATCA
TCTACGTTGCCGCCGCCGTCTCCCGAGATATCTACTTAGCTTCGAGAGAA
AATGGAGAACTTGATTTCTTTGGTTAACAAAATACAAAGAGCTTGTACGG
CTCTTGGCGACCACGGTGAAGCCAGCGCATTGCCTACTCTTTGGGACTCT
CTTCCTGCTATCGCCGTCGTCGGTGGCCAGAGTTCTGGAAAGTCATCAGT
GTTGGAGAGTATTGTTGGCAAGGACTTTTTACCGCGTGGATCTGGTATCG
TTACACGGCGTCCTCTGGTGTTGCAGCTTCATAAACTCGAAGAAGGCAGC
AGAGAATATGCAGAGTTTCTTCACATTCCAAGGAAAAGATTTACCGATTT
TGCTGCTGTGAGGAAAGAGATTCAAGATGAGACTGATAGAGAGACTGGTC
GTACCAAACAAATCTCGAGTGTACCAATTCATCTCAGCATATATTCCCCT
AATGTTGTCAACTTAACGCTGATTGATCTTCCTGGGCTCACAAAAGTAGC
AGTTGAGGGTCAACCAGACAGTATTGTGCAAGATATTGAGAATATGGTTC
GC
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