CN185298

Overview
NameCN185298
Unique NameCN185298
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9208 contig Csv1_Contig9208:365..1089. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185298 vs. ExPASy Swiss-Prot
Match: SDL5A_SOYBN (Dynamin-related protein 5A OS=Glycine max PE=2 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.476e-77
Identity = 141/155 (90.97%), Postives = 151/155 (97.42%), Query Frame = -1
Query:  262 EVGNAAIESLERMRDTSKKATLQLVDMECSYLTVDFFRKLPQDVDKGGNPTHSIFDRYNDSYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTEMGKLEQKRLSNLLNEDPAVMERRSALAKRLELYRSAQSEIDAVAWSK 726
            EVG AA++SLERMRD SK+ATLQLVDMEC YLTVDFFRKLPQDVDKGGNPTHSIFDRYNDSYLRRIGTT+LSYVNMVCA+LRNSIPKSIVYCQVREAKRSLLDHFFTE+GK+E KRLS+LLNEDPA+MERRSALAKRLELYRSAQ+EIDAVAWSK
Sbjct:  456 EVGAAAVDSLERMRDESKRATLQLVDMECGYLTVDFFRKLPQDVDKGGNPTHSIFDRYNDSYLRRIGTTILSYVNMVCATLRNSIPKSIVYCQVREAKRSLLDHFFTELGKMETKRLSSLLNEDPAIMERRSALAKRLELYRSAQAEIDAVAWSK 610          
BLAST of CN185298 vs. ExPASy Swiss-Prot
Match: SDLCA_SOYBN (Dynamin-related protein 12A OS=Glycine max PE=1 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 3.027e-75
Identity = 138/155 (89.03%), Postives = 150/155 (96.77%), Query Frame = -1
Query:  262 EVGNAAIESLERMRDTSKKATLQLVDMECSYLTVDFFRKLPQDVDKGGNPTHSIFDRYNDSYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTEMGKLEQKRLSNLLNEDPAVMERRSALAKRLELYRSAQSEIDAVAWSK 726
            EVG A+++SLERMRD SK+ATLQLVDMEC YLTVDFFRKLPQDVDKGGNPTHSI DRYNDSYLRRIGTT+LSYVNMVCA+LR+SIPKSIVYCQVREAKRSLLDHFFTE+GK+E KRLS+LLNEDPA+MERRSALAKRLELYRSAQ+EIDAVAWSK
Sbjct:  456 EVGAASVDSLERMRDESKRATLQLVDMECGYLTVDFFRKLPQDVDKGGNPTHSICDRYNDSYLRRIGTTILSYVNMVCATLRHSIPKSIVYCQVREAKRSLLDHFFTELGKMEIKRLSSLLNEDPAIMERRSALAKRLELYRSAQAEIDAVAWSK 610          
BLAST of CN185298 vs. ExPASy Swiss-Prot
Match: DRP1A_ARATH (Dynamin-related protein 1A OS=Arabidopsis thaliana GN=DRP1A PE=1 SV=3)

HSP 1 Score: 276.559 bits (706), Expect = 9.737e-74
Identity = 135/155 (87.10%), Postives = 148/155 (95.48%), Query Frame = -1
Query:  262 EVGNAAIESLERMRDTSKKATLQLVDMECSYLTVDFFRKLPQDVDKGGNPTHSIFDRYNDSYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTEMGKLEQKRLSNLLNEDPAVMERRSALAKRLELYRSAQSEIDAVAWSK 726
            EV NAAIESL++MR+ SKKATLQLVDMECSYLTVDFFRKLPQDV+KGGNPTHSIFDRYNDSYLRRIG+ VLSYVNMVCA LRNSIPKSIVYCQVREAKRSLLDHFF E+G ++ KRLS+LLNEDPA+MERRSA++KRLELYR+AQSEIDAVAWSK
Sbjct:  456 EVTNAAIESLDKMREGSKKATLQLVDMECSYLTVDFFRKLPQDVEKGGNPTHSIFDRYNDSYLRRIGSNVLSYVNMVCAGLRNSIPKSIVYCQVREAKRSLLDHFFAELGTMDMKRLSSLLNEDPAIMERRSAISKRLELYRAAQSEIDAVAWSK 610          
BLAST of CN185298 vs. ExPASy Swiss-Prot
Match: DRP1B_ARATH (Dynamin-related protein 1B OS=Arabidopsis thaliana GN=DRP1B PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.840e-65
Identity = 121/155 (78.06%), Postives = 140/155 (90.32%), Query Frame = -1
Query:  262 EVGNAAIESLERMRDTSKKATLQLVDMECSYLTVDFFRKLPQDVDKGGNPTHSIFDRYNDSYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTEMGKLEQKRLSNLLNEDPAVMERRSALAKRLELYRSAQSEIDAVAWSK 726
            EV  AA++SL+RMRD S+KATL LVDME  YLTV+FFRKLPQD +KGGNPTHSIFDRYND+YLRRIG+ VLSYVNMVCA LRNSIPKSIVYCQVREAKRSLLD FFTE+G+ E  +LS LL+EDPAV +RR+++AKRLELYRSAQ++I+AVAWSK
Sbjct:  456 EVSGAAVDSLDRMRDESRKATLLLVDMESGYLTVEFFRKLPQDSEKGGNPTHSIFDRYNDAYLRRIGSNVLSYVNMVCAGLRNSIPKSIVYCQVREAKRSLLDIFFTELGQKEMSKLSKLLDEDPAVQQRRTSIAKRLELYRSAQTDIEAVAWSK 610          
BLAST of CN185298 vs. ExPASy Swiss-Prot
Match: DRP1C_ARATH (Dynamin-related protein 1C OS=Arabidopsis thaliana GN=DRP1C PE=1 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 3.990e-43
Identity = 87/157 (55.41%), Postives = 122/157 (77.71%), Query Frame = -1
Query:  268 EVGNAAIESLERMRDTSKKATLQLVDMECSYLTVDFFRKLPQDVDKGG-NPTHSIF---DRYNDSYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTEMGKLEQKRLSNLLNEDPAVMERRSALAKRLELYRSAQSEIDAVAW 726
            ++  AA E+LER RD S+K  L+LVDME SYLTV+FFRKL  + +K   NP ++     D Y+D++ R+IG+ V +Y+NMVC +LRNS+PK++VYCQVREAKRSLL+ F+ ++G+ E+++L  +L+EDP +MERR  LAKRLELY+ A+ +IDAVAW
Sbjct:  457 DIAAAANEALERFRDESRKTVLRLVDMESSYLTVEFFRKLHLEPEKEKPNPRNAPAPNADPYSDNHFRKIGSNVSAYINMVCDTLRNSLPKAVVYCQVREAKRSLLNFFYAQVGRKEKEKLGAMLDEDPQLMERRGTLAKRLELYKQARDDIDAVAW 613          
BLAST of CN185298 vs. ExPASy Swiss-Prot
Match: DRP1E_ARATH (Dynamin-related protein 1E OS=Arabidopsis thaliana GN=DRP1E PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.676e-41
Identity = 83/161 (51.55%), Postives = 119/161 (73.91%), Query Frame = -1
Query:  268 EVGNAAIESLERMRDTSKKATLQLVDMECSYLTVDFFRKLPQDVDKG--------GNPTHSIFDRYNDSYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTEMGKLEQKRLSNLLNEDPAVMERRSALAKRLELYRSAQSEIDAVAW 726
            E+  AA  SLE+ R+ SKK+ ++LVDME +YLT +FFRKLPQ++++          +P+ +  D+Y D + RRI + V +YVNMV  +LRN+IPK+ VYCQVR+AK +LL++F++++ K E K+L  LL+EDPA+M+RR   AKRLELY+ A+ EIDAVAW
Sbjct:  462 ELAAAANSSLEKFREESKKSVIRLVDMESAYLTAEFFRKLPQEIERPVTNSKNQTASPSSATLDQYGDGHFRRIASNVSAYVNMVSDTLRNTIPKACVYCQVRQAKLALLNYFYSQISKREGKQLGQLLDEDPALMDRRLECAKRLELYKKARDEIDAVAW 622          
BLAST of CN185298 vs. ExPASy Swiss-Prot
Match: DRP1D_ARATH (Dynamin-related protein 1D OS=Arabidopsis thaliana GN=DRP1D PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 6.170e-36
Identity = 78/155 (50.32%), Postives = 111/155 (71.61%), Query Frame = -1
Query:  268 EVGNAAIESLERMRDTSKKATLQLVDMECSYLTVDFFRKLPQDVDKGG--NPTHSIFDRYNDSYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTEMGKLEQKRLSNLLNEDPAVMERRSALAKRLELYRSAQSEIDAVAW 726
            E+  AA  SL++ R+ S K+ L+LVDME SYLTVDFFRKL  +       +PT +I D+Y D + R+I + V +Y+ MV  +L N+IPK++V+CQVR+AK SLL++F+ ++ + + KRL  LL+E+PA+MERR   AKRLELY+ A+ EIDA  W
Sbjct:  457 ELVAAANSSLDKFREESMKSVLRLVDMESSYLTVDFFRKLHVESQNMSLSSPTSAI-DQYGDGHFRKIASNVAAYIKMVAETLVNTIPKAVVHCQVRQAKLSLLNYFYAQISQSQGKRLGQLLDENPALMERRMQCAKRLELYKKARDEIDAAVW 610          
The following BLAST results are available for this feature:
BLAST of CN185298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SDL5A_SOYBN2.476e-7790.97Dynamin-related protein 5A OS=Glycine max PE=2 SV=... [more]
SDLCA_SOYBN3.027e-7589.03Dynamin-related protein 12A OS=Glycine max PE=1 SV... [more]
DRP1A_ARATH9.737e-7487.10Dynamin-related protein 1A OS=Arabidopsis thaliana... [more]
DRP1B_ARATH2.840e-6578.06Dynamin-related protein 1B OS=Arabidopsis thaliana... [more]
DRP1C_ARATH3.990e-4355.41Dynamin-related protein 1C OS=Arabidopsis thaliana... [more]
DRP1E_ARATH1.676e-4151.55Dynamin-related protein 1E OS=Arabidopsis thaliana... [more]
DRP1D_ARATH6.170e-3650.32Dynamin-related protein 1D OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001B24_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001B24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185298 ID=CN185298; Name=CN185298; organism=Citrus sinensis; type=EST; length=726bp
TTTTTTTTTTTTTTTTTAAAGCCGAAAAATTCGTATATTATAGGCACCCT
TATAAGAGTAGCATATGAAAACAACATAACATTTAATACTATCACACAAT
AAAATATGCCTAATCACACCTTGACTACTAGTTAGGGTATAGAAATATAA
TGAAATATCCCGCCGCTTTCTCCCCTGCATGGCTAGTCATAATTGAAAGA
ATGACAGTCACCATCAAGCCAAAATTCGTGAGCTGAAATGGACTGGTAAA
ATGTTGAACTACTTTGACCAAGCAACTGCATCAATTTCTGATTGTGCACT
CCTGTATAACTCCAACCTTTTTGCAAGGGCAGATCGTCGCTCCATGACTG
CCGGATCTTCATTCAACAGGTTTGACAATCGTTTTTGCTCCAATTTACCC
ATTTCAGTGAAGAAATGATCAAGTAGGCTTCGTTTGGCCTCACGAACTTG
ACAATAAACGATGGACTTAGGAATTGAGTTCCGCAGACTTGCACAGACCA
TATTGACATAAGACAAGACCGTGGTTCCAATTCTCCTTAGATACGAATCA
TTGTATCTGTCAAAAATTGAATGTGTAGGATTGCCACCCTTGTCAACATC
CTGAGGAAGCTTCCGGAAGAAATCAACTGTCAGATAACTGCACTCCATAT
CAACAAGCTGAAGTGTAGCTTTTTTGCTTGTGTCCCTCATTCTCTCAAGA
GACTCGATAGCTGCATTTCCAACTTC
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