CN185297

Overview
NameCN185297
Unique NameCN185297
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length729
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1828 contig Csv1_Contig1828:194..922. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185297 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.818e-19
Identity = 40/74 (54.05%), Postives = 58/74 (78.38%), Query Frame = 1 
Query:  127 EDIYCLFMGSLNNLCSLIRQYGLSKGTDEAMFVIEAYRTLRDRGPYPADQVVKDLDGSFAFVVYDSKAGTVFTA 348
            +D++C+F G+L+N   L + YGLS+   EAM ++EAY+ LRDR PYP DQV+K+L+G FAF+++DSKA T+F A
Sbjct:   75 DDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLFLA 148
The following BLAST results are available for this feature:
BLAST of CN185297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC1.818e-1954.05Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001B23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001B23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185297 ID=CN185297; Name=CN185297; organism=Citrus sinensis; type=EST; length=729bp
GAGGGTGACTTCCTCTCCCGTCACTCTGATAACACTTTCTCCATGAACTT
TGGCCATGCTGCTGTTCTTGCTTACGTTCCCCCTCACTCCCCTTTAACCA
AGGACCGAAGGTTGTTTTGCGGGTTTGAGGACATATACTGTCTGTTCATG
GGGTCCTTGAACAACTTGTGCTCGCTGATCAGGCAATATGGGTTGTCAAA
GGGAACCGATGAGGCCATGTTTGTGATAGAGGCGTATCGTACGCTCAGAG
ACCGGGGTCCTTACCCAGCTGATCAGGTTGTCAAGGATCTTGATGGGAGC
TTTGCTTTTGTGGTCTACGATAGCAAGGCCGGCACGGTCTTCACTGCTCT
GGGTTCTGATGGGGGAGTGAAGCTGTACTGGGGAATTGCAGCCGATGGAT
CTGTGGTCATATCTGATGACTTGGAGGTCATCAAAGAGGGATGTGCCAAG
TCATTTGCTCCCTTCCCACAGGGGTGCATGTTCCACAGTGAAGGAGGATT
GATGAGCTTTGAGCATCCAATGAACAAGATAAGGGCAATGCCAAGAGTAG
ATAGTGAAGGTGTCATGTGTGGAGCCAATTTCAAGGTTGATAAATACACT
AGGATCAACAGCATTCCACGTGTGGGAAGTGAAGCAGACTGGACTAATCA
ATGGGACTCACATTAATTTATCAATTAAGGATCAATTTGATTGATCTTGC
TGTGAATTTGCCTACTTCCAACTCAAAAG
back to top