CN185288

Overview
NameCN185288
Unique NameCN185288
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length372
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185288 vs. ExPASy Swiss-Prot
Match: LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.067e-17
Identity = 44/50 (88.00%), Postives = 48/50 (96.00%), Query Frame = -3
Query:  221 RADAVSSLVYEANAGVRDPVYGCVGAISFLQNQVSQLQMQLAGAEAEILC 370
            RADAV+SLV+EANA VRDPVYGCVGAIS+LQNQVSQLQMQLA A+AEILC
Sbjct:   61 RADAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILC 110          
BLAST of CN185288 vs. ExPASy Swiss-Prot
Match: LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.916e-13
Identity = 36/49 (73.47%), Postives = 41/49 (83.67%), Query Frame = -3
Query:  224 RADAVSSLVYEANAGVRDPVYGCVGAISFLQNQVSQLQMQLAGAEAEIL 370
            R DAVSS+VYEANA VRDPVYGCVGAIS LQ Q+  LQ QLA A+AE++
Sbjct:   66 RGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVV 114          
BLAST of CN185288 vs. ExPASy Swiss-Prot
Match: LBD1_ARATH (LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.326e-11
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = -3
Query:  224 RADAVSSLVYEANAGVRDPVYGCVGAISFLQNQVSQLQMQLAGAEAEIL 370
            R DAV+S+VYEA A +RDPVYGC GAI  LQ QVS+LQ QLA A+ E++
Sbjct:   86 RTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMV 134          
BLAST of CN185288 vs. ExPASy Swiss-Prot
Match: LOB_ARATH (Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.673e-11
Identity = 32/48 (66.67%), Postives = 38/48 (79.17%), Query Frame = -3
Query:  227 RADAVSSLVYEANAGVRDPVYGCVGAISFLQNQVSQLQMQLAGAEAEI 370
            R DAV+SL YEA A VRDPVYGCVGAIS+LQ QV +LQ +L  A A++
Sbjct:   64 REDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADL 111          
BLAST of CN185288 vs. ExPASy Swiss-Prot
Match: LBD3_ARATH (LOB domain-containing protein 3 OS=Arabidopsis thaliana GN=LBD3 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.409e-11
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = -3
Query:  224 RADAVSSLVYEANAGVRDPVYGCVGAISFLQNQVSQLQMQLAGAEAEIL 370
            R+DAV S+VYEANA ++DPVYGCVG IS L  Q+  LQ QLA A+AE++
Sbjct:   68 RSDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELI 116          
BLAST of CN185288 vs. ExPASy Swiss-Prot
Match: LBD15_ARATH (LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.409e-11
Identity = 32/49 (65.31%), Postives = 37/49 (75.51%), Query Frame = -3
Query:  224 RADAVSSLVYEANAGVRDPVYGCVGAISFLQNQVSQLQMQLAGAEAEIL 370
            RADA +SLVYEAN  +RDPVYGC+GAIS LQ QV  LQ +L    +EIL
Sbjct:   98 RADAANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEIL 146          
The following BLAST results are available for this feature:
BLAST of CN185288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
LBD12_ARATH1.067e-1788.00LOB domain-containing protein 12 OS=Arabidopsis th... [more]
LBD4_ARATH7.916e-1373.47LOB domain-containing protein 4 OS=Arabidopsis tha... [more]
LBD1_ARATH3.326e-1165.31LOB domain-containing protein 1 OS=Arabidopsis tha... [more]
LOB_ARATH5.673e-1166.67Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis th... [more]
LBD3_ARATH7.409e-1163.27LOB domain-containing protein 3 OS=Arabidopsis tha... [more]
LBD15_ARATH7.409e-1165.31LOB domain-containing protein 15 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0001B18_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001B18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185288 ID=CN185288; Name=CN185288; organism=Citrus sinensis; type=EST; length=372bp
TTTTTTTTTTTTTTTTTGAATACGTACAGAGGGCAGATTTTAATTCCCCT
TTCATGTCCTGTCCAAAGATGGTCTCCCTCTTGAGGGCCTCATGAATTAC
ATTATTGCTAGATGAAGTAAAATTGAGGTATTGATGGGGGAGGTTATTTT
GGAGAAGAAACGGCTTGTCATCTGGGTCTATTTGTGGAGTTGGCATGGTG
GGGTCTTGCTGCATCTGGATGCACAATATCTCTGCTTCCGCCCCTGCCAG
TTGCATTTGCAGCTGAGACACTTGGTTTTGCAAAAAAGATATGGCACCAA
CACAGCCATATACTGGGTCTCTCACTCCGGCGTTTGCTTCATAAACCAAA
CTGCTCACTGCATCTGCCCTTT
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