DC887752

Overview
NameDC887752
Unique NameDC887752
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length484
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887752 vs. ExPASy Swiss-Prot
Match: PUB62_ARATH (U-box domain-containing protein 62 OS=Arabidopsis thaliana GN=PUB62 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.050e-21
Identity = 51/66 (77.27%), Postives = 51/66 (77.27%), Query Frame = -3
Query:  285 IKGNKRTPQRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVXXXXXXXXXXXKMAPNWL 482
            IKGNKRTP RFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAK            KM  NWL
Sbjct:  298 IKGNKRTPPRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAKAPEDPSAKATPNKMVSNWL 363          
BLAST of DC887752 vs. ExPASy Swiss-Prot
Match: PUB63_ARATH (U-box domain-containing protein 63 OS=Arabidopsis thaliana GN=PUB63 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.672e-17
Identity = 41/66 (62.12%), Postives = 50/66 (75.76%), Query Frame = -3
Query:  285 IKGNKRTPQRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVXXXXXXXXXXXKMAPNWL 482
            I+GNKRTP RFVGR AV+ TQCLNGWYVVKT+DN+ES+KLQ+ SLAK+           +M P+WL
Sbjct:  318 IEGNKRTPPRFVGRIAVIMTQCLNGWYVVKTVDNSESIKLQHCSLAKISDNSSTKVTVAEMPPSWL 383          
The following BLAST results are available for this feature:
BLAST of DC887752 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PUB62_ARATH3.050e-2177.27U-box domain-containing protein 62 OS=Arabidopsis ... [more]
PUB63_ARATH2.672e-1762.12U-box domain-containing protein 63 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionDC887752 EIC Citrus sinensis cDNA clone EIC0830 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887752 ID=DC887752; Name=DC887752; organism=Citrus sinensis; type=EST; length=484bp
GCAAAGATTACATAATATTTGTATTTGTACACAAGCATACCAAAATACAA
ATACAGCCATTCACATGCTGAAGCAAATTGATTTTATATGCTCAAATATC
TTTCTACTCTTGTGAGAGGACTTCTATAATTTACAAAAGGCTTATATTAC
AAATGGTAAGCATACAGCAGCTACATTACTAACAGGACTACTTGACTAGC
AAAGTTAGGTTATATAATCCAAATGAGACATCTTTCCAACAAAATATCTC
ATCCCGTTACAACTGATTCTTTACAGCAGGTCTACAGCCAGTTTGGTGCC
ATCTTGCTTGAGGTTGGCTTTGAGGATGAATCATCCGAAACTTTGGCAAG
CGAGCGATACTGCAATTTAACACTCTCTGCATTGTCCAATGTCTTCACCA
CATACCATCCATTTAAGCATTGTGTAGTCACAACAGCCTCGCGTCCAACA
AACCGCTGCGGTGTCCTTTTGTTCCCCTTTATGA
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