DC887748

Overview
NameDC887748
Unique NameDC887748
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length419
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2711 contig Csv1_Contig2711:30..448. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DC887748 vs. ExPASy Swiss-Prot
Match: NUDC2_RAT (NudC domain-containing protein 2 OS=Rattus norvegicus GN=Nudcd2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.727e-12
Identity = 34/68 (50.00%), Postives = 45/68 (66.18%), Query Frame = -3 
Query:  223 WTLEDDVMH---ITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLMLQRFQEENPGFDFSQAQFTGS 417
            WTLED  M    +T TKRD    W S +  +   DP+V DQ Q++L L+RFQ+ENPGFDFS A+ +G+
Sbjct:   77 WTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTLERFQKENPGFDFSGAEISGN 144
[Close]
BLAST of DC887748 vs. ExPASy Swiss-Prot
Match: NUDC2_MOUSE (NudC domain-containing protein 2 OS=Mus musculus GN=Nudcd2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.727e-12
Identity = 34/68 (50.00%), Postives = 45/68 (66.18%), Query Frame = -3 
Query:  223 WTLEDDVMH---ITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLMLQRFQEENPGFDFSQAQFTGS 417
            WTLED  M    +T TKRD    W S +  +   DP+V DQ Q++L L+RFQ+ENPGFDFS A+ +G+
Sbjct:   77 WTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTLERFQKENPGFDFSGAEISGN 144
[Close]
BLAST of DC887748 vs. ExPASy Swiss-Prot
Match: NUDC2_HUMAN (NudC domain-containing protein 2 OS=Homo sapiens GN=NUDCD2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.727e-12
Identity = 34/68 (50.00%), Postives = 45/68 (66.18%), Query Frame = -3 
Query:  223 WTLEDDVMH---ITLTKRDKGQTWASPIMGQGQLDPYVTDQEQKRLMLQRFQEENPGFDFSQAQFTGS 417
            WTLED  M    +T TKRD    W S +  +   DP+V DQ Q++L L+RFQ+ENPGFDFS A+ +G+
Sbjct:   77 WTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTLERFQKENPGFDFSGAEISGN 144
The following BLAST results are available for this feature:
BLAST of DC887748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
NUDC2_RAT6.727e-1250.00NudC domain-containing protein 2 OS=Rattus norvegi... [more]
NUDC2_MOUSE6.727e-1250.00NudC domain-containing protein 2 OS=Mus musculus G... [more]
NUDC2_HUMAN6.727e-1250.00NudC domain-containing protein 2 OS=Homo sapiens G... [more]
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Properties
Property NameValue
Genbank descriptionDC887748 EIC Citrus sinensis cDNA clone EIC0824 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887748 ID=DC887748; Name=DC887748; organism=Citrus sinensis; type=EST; length=419bp
TGCATGTGACCACAATCATTTGACAAGGTCAATACAGTTTTACATAGAAT
ACCTGAACACTGACGGAAATCAGATTGTTTTTATTTACCGAGAGAGTGTC
AGGATTCTAATAGGCTTAATACAGGTAAATAATGCTACAGACTTAATACA
AGTAAGCAATGTAGCGTAGTAACATTGTCAATCAGAGCGGATCCCACCCA
TAAAGGTCCTTGGGTCGGGGCAGCTACCTGTAAATTGTGCCTGCGAGAAG
TCAAAACCCGGATTCTCTTCTTGGAACCTCTGCAGCATGAGACGCTTCTG
TTCTTGATCAGTGACATAAGGGTCGAGCTGACCCTGACCCATTATAGGCG
AAGCCCAAGTCTGACCCTTATCCCTTTTCGTCAATGTTATGTGCATCACA
TCATCCTCTAAGGTCCAGA
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