DC887747

Overview
NameDC887747
Unique NameDC887747
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length565
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC887747_ssr84 microsatellite DC887747_ssr84:84..95. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3592 contig Csv1_Contig3592:85..653. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2AX_CICAR (Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 1.686e-52
Identity = 105/138 (76.09%), Postives = 115/138 (83.33%), Query Frame = -3
Query:  150 SSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQEF 563
            SS  +TKGGRGKPK++KS+SRS KAGLQFPVGRIARFLKAGKYA+RVGAGAP                 AGNAARDNK NRIVPRHIQLAVRNDEELSKLLG+VTIANGGVLPNIHQ LLP+K+GKG+ +IGSASQEF
Sbjct:    2 SSTATTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGEIGSASQEF 139          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2AXB_ARATH (Probable histone H2AXb OS=Arabidopsis thaliana GN=At1g54690 PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 2.876e-52
Identity = 105/138 (76.09%), Postives = 114/138 (82.61%), Query Frame = -3
Query:  150 SSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQEF 563
            + +G+TKGGRGKPK+TKS+SRS KAGLQFPVGRIARFLKAGKYA+RVGAGAP                 AGNAARDNKK RIVPRHIQLAVRNDEELSKLLG+VTIANGGVLPNIHQ LLP K+GK + DIGSASQEF
Sbjct:    5 AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGKNKGDIGSASQEF 142          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 6.408e-52
Identity = 104/138 (75.36%), Postives = 114/138 (82.61%), Query Frame = -3
Query:  150 SSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQEF 563
            + +G+TKGGRGKPK+TKS+SRS KAGLQFPVGRIARFLK+GKYA+RVGAGAP                 AGNAARDNKK RIVPRHIQLAVRNDEELSKLLG+VTIANGGVLPNIHQ LLP K+GK + DIGSASQEF
Sbjct:    5 AGSGTTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGKNKGDIGSASQEF 142          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2AX_PICAB (Histone H2AX OS=Picea abies PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.578e-50
Identity = 104/137 (75.91%), Postives = 110/137 (80.29%), Query Frame = -3
Query:  150 SAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQEF 560
            S+   KGGRGK KSTKS+SRS KAGLQFPVGRIARFLKAGKYA+RVGAGAP                 AGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG VTIANGGVLPNIHQ LLP+K GK + +IGSASQEF
Sbjct:    2 SSSGAKGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVLLPKKSGKDKGEIGSASQEF 138          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSJ (Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 7.331e-48
Identity = 102/138 (73.91%), Postives = 109/138 (78.99%), Query Frame = -3
Query:  150 SSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQEF 563
            SSAG   GGRGK K +KS+SRS KAGLQFPVGRIAR+LKAGKYA+RVGAGAP                 AGNAARDNKKNRIVPRHIQLAVRNDEELS+LLG VTIA GGVLPNIHQ LLP+K GK + DIGSASQEF
Sbjct:    2 SSAGGG-GGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF 138          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSI (Probable histone H2AXb OS=Oryza sativa subsp. indica GN=OsI_037312 PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 7.331e-48
Identity = 102/138 (73.91%), Postives = 109/138 (78.99%), Query Frame = -3
Query:  150 SSAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQEF 563
            SSAG   GGRGK K +KS+SRS KAGLQFPVGRIAR+LKAGKYA+RVGAGAP                 AGNAARDNKKNRIVPRHIQLAVRNDEELS+LLG VTIA GGVLPNIHQ LLP+K GK + DIGSASQEF
Sbjct:    2 SSAGGG-GGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF 138          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSJ (Probable histone H2AXa OS=Oryza sativa subsp. japonica GN=Os03g0721900 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 6.862e-46
Identity = 99/137 (72.26%), Postives = 108/137 (78.83%), Query Frame = -3
Query:  150 SAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQEF 560
            S+    GGRGK K+TK++SRS KAGLQFPVGRIAR+LKAGKYA+RVGAGAP                 AGNAARDNKKNRIVPRHIQLAVRNDEELS+LLGTVTIA GGVLPNI Q LLP+K G G+ DIGSASQEF
Sbjct:    2 SSSQGGGGRGKAKTTKAVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKK-GGGKGDIGSASQEF 137          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSI (Probable histone H2AXa OS=Oryza sativa subsp. indica GN=OsI_012923 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 6.862e-46
Identity = 99/137 (72.26%), Postives = 108/137 (78.83%), Query Frame = -3
Query:  150 SAGSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMGKGREDIGSASQEF 560
            S+    GGRGK K+TK++SRS KAGLQFPVGRIAR+LKAGKYA+RVGAGAP                 AGNAARDNKKNRIVPRHIQLAVRNDEELS+LLGTVTIA GGVLPNI Q LLP+K G G+ DIGSASQEF
Sbjct:    2 SSSQGGGGRGKAKTTKAVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKK-GGGKGDIGSASQEF 137          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A_CHLRE (Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.087e-38
Identity = 83/123 (67.48%), Postives = 92/123 (74.80%), Query Frame = -3
Query:  177 GRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKM--GKGRE 539
            G+GK    K++SRS KAGLQFPVGRIAR+LK GKYA+R+GAGAP                 AGNAARDNKKNRIVPRHIQLA+RNDEEL KLLG VTIA+GGVLPNIH  LLP+K   GKG E
Sbjct:    5 GKGKTSGKKAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKTKGGKGEE 127          
BLAST of DC887747 vs. ExPASy Swiss-Prot
Match: H2A6_ARATH (Histone H2A.6 OS=Arabidopsis thaliana GN=RAT5 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.087e-38
Identity = 89/129 (68.99%), Postives = 94/129 (72.87%), Query Frame = -3
Query:  174 GSTKGGRGKPKSTKSISRSHKAGLQFPVGRIARFLKAGKYADRVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGTVTIANGGVLPNIHQNLLPRKMG--KGRED 554
            G T G  G  K+T   SRS KAGLQFPVGRIARFLKAGKYA+RVGAGAP                 AGNAARDNKK RIVPRHIQLAVRNDEELSKLLG VTIANGGV+PNIH  LLP+K G  K +ED
Sbjct:    5 GKTLGSGGAKKAT---SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGASKPQED 130          
The following BLAST results are available for this feature:
BLAST of DC887747 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2AX_CICAR1.686e-5276.09Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1[more]
H2AXB_ARATH2.876e-5276.09Probable histone H2AXb OS=Arabidopsis thaliana GN=... [more]
H2AXA_ARATH6.408e-5275.36Probable histone H2AXa OS=Arabidopsis thaliana GN=... [more]
H2AX_PICAB1.578e-5075.91Histone H2AX OS=Picea abies PE=2 SV=1[more]
H2AXB_ORYSJ7.331e-4873.91Probable histone H2AXb OS=Oryza sativa subsp. japo... [more]
H2AXB_ORYSI7.331e-4873.91Probable histone H2AXb OS=Oryza sativa subsp. indi... [more]
H2AXA_ORYSJ6.862e-4672.26Probable histone H2AXa OS=Oryza sativa subsp. japo... [more]
H2AXA_ORYSI6.862e-4672.26Probable histone H2AXa OS=Oryza sativa subsp. indi... [more]
H2A_CHLRE3.087e-3867.48Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II... [more]
H2A6_ARATH3.087e-3868.99Histone H2A.6 OS=Arabidopsis thaliana GN=RAT5 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionDC887747 EIC Citrus sinensis cDNA clone EIC0823 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887747 ID=DC887747; Name=DC887747; organism=Citrus sinensis; type=EST; length=565bp
TTTTGTTTCCTATATTCGGCCGGANCCCAAATCCCAGTTTACACGGAGAT
AAAAGGATCACAAATAAAGAAAAAAATTGCGTAAATCAATCAATCCTGCA
TTTTTTTTTTAAGTATTCAAATTCAACAAGCAGAGAAGTTTCAGCACTAA
AATTCTTGCGAAGCAGATCCAATATCCTCCCTTCCTTTGCCCATTTTCCT
TGGCAACAGGTTCTGATGAATGTTTGGCAGAACTCCTCCATTTGCAATAG
TAACTGTGCCCAAAAGCTTGCTTAATTCTTCATCATTCCTCACAGCTAGT
TGAATGTGCCTTGGAACGATACGGTTCTTTTTGTTATCCCTTGCAGCATT
TCCAGCAAGCTCCAAAACCTCAGCAGCAAGGTATTCAAGAACAGCCGATA
GGTAGACGGGGGCGCCGGCACCCACGCGATCGGCGTACTTTCCGGCTTTG
AGGAAGCGAGCAATACGGCCGACGGGGAACTGAAGGCCAGCCTTGTGAGA
TCTGGAAATTGATTTGGTCGACTTGGGCTTGCCTCTGCCGCCCTTCGTTG
ATCCTGCGGAGCTCA
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