CN185231

Overview
NameCN185231
Unique NameCN185231
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10292 contig Csv1_Contig10292:269..905. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185231 vs. ExPASy Swiss-Prot
Match: PRP31_XENLA (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xenopus laevis GN=prpf31 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 3.804e-41
Identity = 96/212 (45.28%), Postives = 129/212 (60.85%), Query Frame = 3
Query:    6 NVSKLHKCHRFTVIMQKVEAALQNGPYISNHGMVLEDDPEYQLIVDCNVPXXXXXXXXXXXHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTL--VDLEGLLPSAIIMVVSVTASTTSGKPLPEDVFQRTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAG 635
            +++KL     F+ I+ K+E  +Q  P  S     +E  PEY++IVD N             H FIRDKY  +FPELESLV + +DY R VK++GN +D      +L+ +L +A IMVVSVTASTT G+ L ++  +R                    +VESRMS+IAPNLS IVG++ AAK+MG AGGL+ L+KMPACNV LLGA++K L G
Sbjct:   49 SIAKLSDSKLFSEILLKIEGYIQKQPKASEVMGPVEAAPEYKVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNNLDKCKNNENLQQILTNATIMVVSVTASTTQGQQLTDEELERIEEACDMALELNQSKHRIYEYVESRMSFIAPNLSIIVGASTAAKIMGIAGGLTNLSKMPACNVMLLGAQRKTLTG 260          
BLAST of CN185231 vs. ExPASy Swiss-Prot
Match: PRP31_XENTR (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xenopus tropicalis GN=prpf31 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.888e-40
Identity = 94/212 (44.34%), Postives = 130/212 (61.32%), Query Frame = 3
Query:    6 NVSKLHKCHRFTVIMQKVEAALQNGPYISNHGMVLEDDPEYQLIVDCNVPXXXXXXXXXXXHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTL--VDLEGLLPSAIIMVVSVTASTTSGKPLPEDVFQRTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAG 635
            +++KL     F+ I+ K++  ++  P  S     +E  PEY++IVD N             H FIRDKY  +FPELESLV + +DY R VK++GN +D      +L+ +L +A IMVVSVTASTT G+ L ++  +R                    +VESRMS+IAPNLS IVG++ AAK+MG AGGL+ L+KMPACNV LLGA++K L+G
Sbjct:   49 SIAKLSDSKLFSEILLKIDGYIKKQPKASEVMGPVEAAPEYKVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNNLDKCKNNENLQQILTNATIMVVSVTASTTQGQQLTDEELERIEEACDMALELNQSKHRIYEYVESRMSFIAPNLSIIVGASTAAKIMGIAGGLTNLSKMPACNVMLLGAQRKTLSG 260          
BLAST of CN185231 vs. ExPASy Swiss-Prot
Match: PRP31_HUMAN (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Homo sapiens GN=PRPF31 PE=1 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 3.220e-40
Identity = 94/211 (44.55%), Postives = 126/211 (59.72%), Query Frame = 3
Query:    9 VSKLHKCHRFTVIMQKVEAALQNGPYISNHGMVLEDDPEYQLIVDCNVPXXXXXXXXXXXHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTL--VDLEGLLPSAIIMVVSVTASTTSGKPLPEDVFQRTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAG 635
            ++KL     F  IM K+E  +      S     +E  PEY++IVD N             H FIRDKY  +FPELESLV + +DY R VK++GN +D      +L+ +L +A IMVVSVTASTT G+ L E+  +R                    +VESRMS+IAPNLS I+G++ AAK+MG AGGL+ L+KMPACN+ LLGA++K L+G
Sbjct:   51 IAKLWDSKMFAEIMMKIEEYISKQAKASEVMGPVEAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKNNENLQQILTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQRKTLSG 261          
BLAST of CN185231 vs. ExPASy Swiss-Prot
Match: PRP31_MOUSE (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Mus musculus GN=Prpf31 PE=2 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 5.493e-40
Identity = 93/212 (43.87%), Postives = 127/212 (59.91%), Query Frame = 3
Query:    6 NVSKLHKCHRFTVIMQKVEAALQNGPYISNHGMVLEDDPEYQLIVDCNVPXXXXXXXXXXXHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTL--VDLEGLLPSAIIMVVSVTASTTSGKPLPEDVFQRTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAG 635
            +++KL     F  IM K+E  +      S     +E  PEY++IVD N             H FIRDKY  +FPELESLV + +DY R VK++GN +D      +L+ +L +A IMVVSVTASTT G+ L ++  +R                    +VESRMS+IAPNLS I+G++ AAK+MG AGGL+ L+KMPACN+ LLGA++K L+G
Sbjct:   50 SIAKLWDSKMFAEIMMKIEEYISKQANASEVMGPVEAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKNNENLQQILTNATIMVVSVTASTTQGQQLSDEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQRKTLSG 261          
BLAST of CN185231 vs. ExPASy Swiss-Prot
Match: PRP31_DANRE (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Danio rerio GN=prpf31 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.087e-39
Identity = 94/213 (44.13%), Postives = 127/213 (59.62%), Query Frame = 3
Query:    3 SNVSKLHKCHRFTVIMQKVEAALQNGPYISNHGMVLEDDPEYQLIVDCNVPXXXXXXXXXXXHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVD--LEGLLPSAIIMVVSVTASTTSGKPLPEDVFQRTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAG 635
            ++++KL     F  IM K+   + N    S     +E DPEY+LIV  N             H F+RDKY  +FPELESLV + +DY R VK++GN ++    +  L+ +L +A IMVVSVTASTT G  L +D  QR                    +VESRMS+IAPNLS IVG++ AAK+MG AGGL+ L+KMPACN+ LLGA+++ L+G
Sbjct:   60 TSIAKLRHSKPFAEIMDKISHYVGNQRKNSEVSGPVEADPEYRLIVAANNLTVEIDNELNIIHKFVRDKYSKRFPELESLVPNALDYIRTVKELGNNLEKCKNNETLQQILTNATIMVVSVTASTTQGTMLGDDELQRLEEACDMALELNQSKHRIYEYVESRMSFIAPNLSIIVGASTAAKIMGVAGGLTNLSKMPACNLMLLGAQRRTLSG 272          
BLAST of CN185231 vs. ExPASy Swiss-Prot
Match: PRP31_SCHPO (Pre-mRNA-processing factor 31 OS=Schizosaccharomyces pombe GN=prp31 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.731e-30
Identity = 70/176 (39.77%), Postives = 99/176 (56.25%), Query Frame = 3
Query:  108 LEDDPEYQLIVDCNVPXXXXXXXXXXXHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVFQRTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKKKNLAG 635
            +EDD EY LIVD N             H  +++ Y  +FPEL SLV +  DY + V  + N++D +   L   LPSA +MV++ TA+TT GKPLP+++ +                     +V+SR+S +APNLSA+VGS  AA L+G AGGL+ L K PACN+  LG ++    G
Sbjct:  111 IEDDLEYHLIVDSNSIAMEIDDEILRLHRLVKEWYHDRFPELSSLVLNAFDYCKTVSSLLNDLDNSKTKLS-FLPSATVMVIATTATTTVGKPLPDEMIKNVKNCCEAIQQLGEEKQKIIEYVQSRISVVAPNLSAVVGSTTAANLIGIAGGLTRLGKFPACNLPALGKRRLTTIG 285          
BLAST of CN185231 vs. ExPASy Swiss-Prot
Match: NOP58_SCLS1 (Nucleolar protein 58 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=NOP58 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.585e-15
Identity = 44/141 (31.21%), Postives = 71/141 (50.35%), Query Frame = 3
Query:  198 IRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVFQRTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKK 620
            +++ Y   FPE+  +V+  + YARV+ K+G  ++ +  DL  +LP  I   +   A  + G  + E+                        ++ +RM  IAPNL+ +VG  V A+L+  AG L  LAK PA  +Q+LGA+K
Sbjct:  186 VKEWYGWHFPEMGKIVNDNLAYARVILKVGMRVNTSSTDLADILPEEIEAAIKAAAEVSMGTEITEEDLDNIKLLAEQVVGFTEYRQQLSSYLSARMQAIAPNLTELVGELVGARLIAHAGSLMNLAKSPASTIQILGAEK 326          
BLAST of CN185231 vs. ExPASy Swiss-Prot
Match: NOP58_EMENI (Nucleolar protein 58 OS=Emericella nidulans GN=nop58 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.585e-15
Identity = 46/141 (32.62%), Postives = 73/141 (51.77%), Query Frame = 3
Query:  198 IRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVFQRTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKK 620
            +++ Y   FPEL  +++  I Y+R+V K+G   +    DL  +LP  I   V   A  + G  + ED  +                     ++ +RM+ IAPNL+A+VG  V A+L+  AG L+ L+K PA  +Q+LGA+K
Sbjct:  186 VKEWYGWHFPELAKILNDNIAYSRLVLKMGMRSNFENADLAEILPEEIEAAVKAAADRSMGTEISEDDLENIQALAEQVVGFSEYRSQLAGYITARMNAIAPNLTALVGDLVGARLIAHAGSLTNLSKSPASTLQILGAEK 326          
BLAST of CN185231 vs. ExPASy Swiss-Prot
Match: NOP58_SCHPO (Nucleolar protein 58 OS=Schizosaccharomyces pombe GN=nop58 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.683e-15
Identity = 44/141 (31.21%), Postives = 69/141 (48.94%), Query Frame = 3
Query:  198 IRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVFQRTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKK 620
            +R+ Y   FPE+  ++   + YARV+K +G     +  D   +LP  I   +   A  + G  + E+     +                  ++ +RM  IAPNL+A+VG  V A+L+  AG L  LAK PA  +Q+LGA+K
Sbjct:  184 VREWYGWHFPEMGKIIQDNLAYARVIKAMGMRTKCSETDFSDILPEEIEATLKSAAEISMGTEITEEDLDNIVMLADQVLELASYRAQLSEYLRNRMQAIAPNLTALVGELVGARLIAHAGSLMNLAKQPASTIQILGAEK 324          
BLAST of CN185231 vs. ExPASy Swiss-Prot
Match: NOP58_CANAL (Nucleolar protein 58 OS=Candida albicans GN=NOP58 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.683e-15
Identity = 46/140 (32.86%), Postives = 70/140 (50.00%), Query Frame = 3
Query:  201 RDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEDVFQRTIXXXXXXXXXXXXXXXXXXFVESRMSYIAPNLSAIVGSAVAAKLMGTAGGLSALAKMPACNVQLLGAKK 620
            ++ Y   FPEL  ++   + YAR++  +G   + +  DL  +LP  +   V   A  + G  + ED                        ++ SRM  IAPNL+A+VG  V A+L+  AG L++LAK PA  VQ+LGA+K
Sbjct:  185 KEWYGWHFPELAKMITDSVAYARIILTMGVRSNASETDLSEILPEEVEEQVKAAAEVSMGTEITEDDLNNIKALAEQIVDFAAYREQLSNYLSSRMKAIAPNLTAMVGELVGARLIAHAGSLTSLAKAPASTVQILGAEK 324          
The following BLAST results are available for this feature:
BLAST of CN185231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
PRP31_XENLA3.804e-4145.28U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xen... [more]
PRP31_XENTR1.888e-4044.34U4/U6 small nuclear ribonucleoprotein Prp31 OS=Xen... [more]
PRP31_HUMAN3.220e-4044.55U4/U6 small nuclear ribonucleoprotein Prp31 OS=Hom... [more]
PRP31_MOUSE5.493e-4043.87U4/U6 small nuclear ribonucleoprotein Prp31 OS=Mus... [more]
PRP31_DANRE2.087e-3944.13U4/U6 small nuclear ribonucleoprotein Prp31 OS=Dan... [more]
PRP31_SCHPO6.731e-3039.77Pre-mRNA-processing factor 31 OS=Schizosaccharomyc... [more]
NOP58_SCLS13.585e-1531.21Nucleolar protein 58 OS=Sclerotinia sclerotiorum (... [more]
NOP58_EMENI3.585e-1532.62Nucleolar protein 58 OS=Emericella nidulans GN=nop... [more]
NOP58_SCHPO4.683e-1531.21Nucleolar protein 58 OS=Schizosaccharomyces pombe ... [more]
NOP58_CANAL4.683e-1532.86Nucleolar protein 58 OS=Candida albicans GN=NOP58 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001A09_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185231 ID=CN185231; Name=CN185231; organism=Citrus sinensis; type=EST; length=637bp
TGAGTAATGTTTCAAAATTGCATAAATGTCATAGATTCACTGTTATAATG
CAGAAAGTTGAAGCTGCACTCCAGAACGGTCCTTATATATCTAATCATGG
AATGGTATTGGAGGATGATCCAGAGTATCAGCTAATTGTCGATTGTAATG
TTCCATAAATTGACATATAGAATGAGATTGTGATTATTCATAATTTCATT
CGCGACAAGTACAGACTGAAATTTCCAGAGCTTGAATCTTTAGTCCATCA
CCCCATTGATTATGCCCGTGTTGTGAAAAAGATCGGCAACGAAATGGATT
TGACGCTTGTGGATCTGGAGGGGCTTTTACCCTCAGCCATTATCATGGTG
GTGTCCGTCACAGCATCAACTACAAGTGGCAAACCACTTCCAGAAGATGT
GTTTCAAAGGACAATTGATGCATGTGATCGAGCTCTTGCACTTGATGCAG
CAAAGAAGAAGGTCCTTGATTTTGTAGAAAGCAGGATGAGCTATATTGCG
CCCAATCTATCTGCAATTGTTGGCAGTGCTGTTGCAGCAAAACTCATGGG
AACGGCTGGTGGTCTCTCAGCATTAGCTAAGATGCCTGCTTGTAACGTTC
AGCTTCTTGGCGCAAAGAAAAAGAATCTTGCTGGTTT
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