CN185217

Overview
NameCN185217
Unique NameCN185217
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length268
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185217 vs. ExPASy Swiss-Prot
Match: MTDH1_STYHU (Probable mannitol dehydrogenase 1 OS=Stylosanthes humilis GN=CAD1 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.056e-21
Identity = 43/61 (70.49%), Postives = 52/61 (85.25%), Query Frame = 3
Query:   84 ADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKSLEINVSKFKEGDKVGV 266
            ADDVT+KIL+CG+CHSDLH  +N+WG T YP+VPGHEI G VTK +  NV+KFKEGD+VGV
Sbjct:   30 ADDVTLKILYCGVCHSDLHTVKNDWGFTTYPVVPGHEIAGIVTK-VGSNVTKFKEGDRVGV 89          
BLAST of CN185217 vs. ExPASy Swiss-Prot
Match: MTDH_MEDSA (Probable mannitol dehydrogenase OS=Medicago sativa GN=CAD1 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.052e-20
Identity = 43/64 (67.19%), Postives = 52/64 (81.25%), Query Frame = 3
Query:   75 ETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKSLEINVSKFKEGDKVGV 266
            E G DDV++KIL+CG+CHSDLH  +N+WG T YP+VPGHEIVG VTK + INV KF+ GD VGV
Sbjct:   34 ENGDDDVSVKILYCGVCHSDLHTLKNDWGFTTYPVVPGHEIVGVVTK-VGINVKKFRVGDNVGV 96          
BLAST of CN185217 vs. ExPASy Swiss-Prot
Match: CADH3_ARATH (Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis thaliana GN=CAD3 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.795e-20
Identity = 43/64 (67.19%), Postives = 52/64 (81.25%), Query Frame = 3
Query:   75 ETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKSLEINVSKFKEGDKVGV 266
            E G +DVT+KILFCG+CHSDLH  +N WG + YPI+PGHEIVG  TK +  NV+KFKEGD+VGV
Sbjct:   28 ENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATK-VGKNVTKFKEGDRVGV 90          
BLAST of CN185217 vs. ExPASy Swiss-Prot
Match: CADH2_ARATH (Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis thaliana GN=CAD2 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.795e-20
Identity = 43/64 (67.19%), Postives = 52/64 (81.25%), Query Frame = 3
Query:   75 ETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKSLEINVSKFKEGDKVGV 266
            E G +DVT+KILFCG+CHSDLH  +N WG + YPI+PGHEIVG  TK +  NV+KFKEGD+VGV
Sbjct:   28 ENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATK-VGKNVTKFKEGDRVGV 90          
BLAST of CN185217 vs. ExPASy Swiss-Prot
Match: MTDH_FRAAN (Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.820e-20
Identity = 44/69 (63.77%), Postives = 52/69 (75.36%), Query Frame = 3
Query:   60 NLYV*ETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKSLEINVSKFKEGDKVGV 266
            N Y  ETG  DVT K+L+CGICHSDLH  +NEWG + YP+VPGHEIVG VT+ +   V KFK GD+VGV
Sbjct:   27 NFYRRETGEKDVTFKVLYCGICHSDLHMVKNEWGFSTYPLVPGHEIVGEVTE-VGSKVQKFKVGDRVGV 94          
BLAST of CN185217 vs. ExPASy Swiss-Prot
Match: CADH9_ARATH (Probable cinnamyl alcohol dehydrogenase 9 OS=Arabidopsis thaliana GN=CAD9 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 8.907e-20
Identity = 41/64 (64.06%), Postives = 53/64 (82.81%), Query Frame = 3
Query:   75 ETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKSLEINVSKFKEGDKVGV 266
            + G +DVT+KILFCG+CH+DLH  +N+WG + YP+VPGHEIVG  TK +  NV+KFKEGD+VGV
Sbjct:   34 DNGENDVTVKILFCGVCHTDLHTIKNDWGYSYYPVVPGHEIVGIATK-VGKNVTKFKEGDRVGV 96          
BLAST of CN185217 vs. ExPASy Swiss-Prot
Match: CADH8_ARATH (Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis thaliana GN=CAD8 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.984e-19
Identity = 42/64 (65.62%), Postives = 51/64 (79.69%), Query Frame = 3
Query:   75 ETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKSLEINVSKFKEGDKVGV 266
            ETG  DV  K+LFCGICHSDLH  +NEWG++ YP+VPGHEIVG VT+ +   V+KFK G+KVGV
Sbjct:   30 ETGEKDVRFKVLFCGICHSDLHMVKNEWGMSTYPLVPGHEIVGVVTE-VGAKVTKFKTGEKVGV 92          
BLAST of CN185217 vs. ExPASy Swiss-Prot
Match: CADH3_ORYSJ (Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza sativa subsp. japonica GN=CAD3 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.592e-19
Identity = 43/63 (68.25%), Postives = 51/63 (80.95%), Query Frame = 3
Query:   78 TGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKSLEINVSKFKEGDKVGV 266
            TG DDV IKILFCGICHSDLHC +NEW  + YP+VPGHEI G VT+ +  NV++FK GD+VGV
Sbjct:   38 TGDDDVAIKILFCGICHSDLHCIKNEWKHSIYPLVPGHEIAGVVTE-VGKNVTRFKAGDRVGV 99          
BLAST of CN185217 vs. ExPASy Swiss-Prot
Match: CADH6_ORYSJ (Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza sativa subsp. japonica GN=CAD6 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 7.541e-19
Identity = 40/64 (62.50%), Postives = 50/64 (78.12%), Query Frame = 3
Query:   75 ETGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKSLEINVSKFKEGDKVGV 266
            E G DDVTIK+ +CG+CH+DLH   N+WG+T YP+VPGHEI G VTK +  NV+ FK GD+VGV
Sbjct:   32 ENGVDDVTIKVKYCGMCHTDLHFIHNDWGITMYPVVPGHEITGVVTK-VGTNVAGFKVGDRVGV 94          
BLAST of CN185217 vs. ExPASy Swiss-Prot
Match: CADH5_ORYSJ (Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza sativa subsp. japonica GN=CAD5 PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 7.541e-19
Identity = 43/63 (68.25%), Postives = 50/63 (79.37%), Query Frame = 3
Query:   78 TGADDVTIKILFCGICHSDLHCARNEWGVTNYPIVPGHEIVGTVTKSLEINVSKFKEGDKVGV 266
            TG DDV IKIL+CGICHSDLH  +NEW    YP+VPGHEI G VT++ + NV+KFK GDKVGV
Sbjct:   28 TGDDDVVIKILYCGICHSDLHSIKNEWKNATYPLVPGHEIAGVVTEAGK-NVTKFKGGDKVGV 89          
The following BLAST results are available for this feature:
BLAST of CN185217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
MTDH1_STYHU8.056e-2170.49Probable mannitol dehydrogenase 1 OS=Stylosanthes ... [more]
MTDH_MEDSA1.052e-2067.19Probable mannitol dehydrogenase OS=Medicago sativa... [more]
CADH3_ARATH1.795e-2067.19Cinnamyl alcohol dehydrogenase 3 OS=Arabidopsis th... [more]
CADH2_ARATH1.795e-2067.19Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis th... [more]
MTDH_FRAAN6.820e-2063.77Probable mannitol dehydrogenase OS=Fragaria ananas... [more]
CADH9_ARATH8.907e-2064.06Probable cinnamyl alcohol dehydrogenase 9 OS=Arabi... [more]
CADH8_ARATH1.984e-1965.63Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis th... [more]
CADH3_ORYSJ2.592e-1968.25Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza... [more]
CADH6_ORYSJ7.541e-1962.50Probable cinnamyl alcohol dehydrogenase 6 OS=Oryza... [more]
CADH5_ORYSJ7.541e-1968.25Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006P23_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006P23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185217 ID=CN185217; Name=CN185217; organism=Citrus sinensis; type=EST; length=268bp
ATTCGTATTATTTTATTTGTTTATGTACTTTTTGTCACTCTGCTTGGTTG
AACTGGCGAAACTTATATGTTTGAGAAACTGGTGCTGATGATGTAACTAT
TAAGATCCTCTTTTGTGGGATTTGCCACTCGGACTTGCATTGTGCCAGAA
ATGAATGGGGTGTCACCAATTACCCAATTGTTCCCGGGCATGAAATTGTT
GGTACTGTGACAAAAAGTTTGGAAATAAACGTGTCAAAATTCAAAGAGGG
TGACAAGGTTGGAGTTGG
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