CN185209

Overview
NameCN185209
Unique NameCN185209
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig755 contig Csv1_Contig755:13..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185209 vs. ExPASy Swiss-Prot
Match: GALM_RAT (Aldose 1-epimerase OS=Rattus norvegicus GN=Galm PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.761e-37
Identity = 71/138 (51.45%), Postives = 93/138 (67.39%), Query Frame = 1
Query:  145 EVFELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTL 558
            E F+L +  + V I ++G  IT+L V D+ G  +DVVLGF  +E Y++   P+FG +VGRVANRI  G+F++DG EY LPIN+ PNSLHGGF+GFDKV+W       G    + F   S DGEEGYPG++ V  TYTL
Sbjct:   20 EKFQLRSDQLNVDIISWGCTITALQVKDRQGKASDVVLGFAELEGYLQ-KQPYFGAVVGRVANRIAKGRFTVDGKEYHLPINREPNSLHGGFRGFDKVLWTPQVLSNG----VQFSRVSPDGEEGYPGELKVWVTYTL 152          

HSP 2 Score: 33.4982 bits (75), Expect = 3.761e-37
Identity = 14/33 (42.42%), Postives = 21/33 (63.64%), Query Frame = 2
Query:  599 QKTSRPPISLAHHTY*NLAGHHSGNILDHSIQI 697
            Q +   P++L +H+Y NLAG  S +I DH + I
Sbjct:  164 QASQTTPVNLTNHSYFNLAGQGSPDIYDHEVTI 196          
BLAST of CN185209 vs. ExPASy Swiss-Prot
Match: GALM_BOVIN (Aldose 1-epimerase OS=Bos taurus GN=GALM PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.838e-36
Identity = 71/138 (51.45%), Postives = 90/138 (65.22%), Query Frame = 1
Query:  145 EVFELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTL 558
            E F+L +  ++V I ++G  IT+L V D+ G  +DVVLGFD +E Y++   P+FG +VGRVANRI  G F+LDG EY L IN  PNSLHGG KGFDKV+W       G    + F   S DGEEGYPG++ V   YTL
Sbjct:   20 EKFQLQSDQLRVDIISWGCTITALEVKDRQGRASDVVLGFDELEGYLQ-KQPYFGAVVGRVANRIAKGTFTLDGKEYKLAINNGPNSLHGGVKGFDKVLWTPRVLSNG----VEFSRVSPDGEEGYPGELKVWVMYTL 152          

HSP 2 Score: 35.4242 bits (80), Expect = 1.838e-36
Identity = 15/33 (45.45%), Postives = 21/33 (63.64%), Query Frame = 2
Query:  599 QKTSRPPISLAHHTY*NLAGHHSGNILDHSIQI 697
            Q +   P++L +H+Y NLAG  S NI DH + I
Sbjct:  164 QASQTTPVNLTNHSYFNLAGQGSPNIYDHEVTI 196          
BLAST of CN185209 vs. ExPASy Swiss-Prot
Match: GALM_MOUSE (Aldose 1-epimerase OS=Mus musculus GN=Galm PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.063e-36
Identity = 69/138 (50.00%), Postives = 91/138 (65.94%), Query Frame = 1
Query:  145 EVFELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTL 558
            E F+L +  + V I ++G  IT+L V D+ G  +DVVLGF  +E Y++   P+FG +VGRVANRI  G+F++ G EY LP+N+ PNSLHGGF GFDKV+W       G    + F   S DGEEGYPG++ V  TYTL
Sbjct:   20 EKFQLRSDQLSVDIISWGCTITALQVKDRQGKASDVVLGFAELEGYLQ-KQPYFGAVVGRVANRIAKGRFTIGGKEYHLPVNREPNSLHGGFTGFDKVLWTPQVLTNG----VQFFRVSPDGEEGYPGELKVWVTYTL 152          

HSP 2 Score: 35.4242 bits (80), Expect = 4.063e-36
Identity = 15/33 (45.45%), Postives = 21/33 (63.64%), Query Frame = 2
Query:  599 QKTSRPPISLAHHTY*NLAGHHSGNILDHSIQI 697
            Q +   P++L +H+Y NLAG  S NI DH + I
Sbjct:  164 QASQTTPVNLTNHSYFNLAGQGSPNIYDHEVTI 196          
BLAST of CN185209 vs. ExPASy Swiss-Prot
Match: GALM_PONAB (Aldose 1-epimerase OS=Pongo abelii GN=GALM PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 8.980e-36
Identity = 70/138 (50.72%), Postives = 90/138 (65.22%), Query Frame = 1
Query:  145 EVFELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTL 558
            E F+L +  ++V I ++G  IT+L V D+ G  +DVVLGF  +E Y++   P+FG ++GRVANRI  G F +DG EY L INK PNSLHGG +GFDKV+W       G    I F   S DGEEGYPG++ V  TYTL
Sbjct:   20 EKFQLQSDLLRVDIISWGCTITALEVKDRQGRSSDVVLGFAELEGYLQ-KQPYFGAVIGRVANRIAKGTFKVDGKEYHLAINKEPNSLHGGVRGFDKVLWTPRVLSNG----IQFSRISPDGEEGYPGELKVWVTYTL 152          

HSP 2 Score: 35.4242 bits (80), Expect = 8.980e-36
Identity = 15/33 (45.45%), Postives = 21/33 (63.64%), Query Frame = 2
Query:  599 QKTSRPPISLAHHTY*NLAGHHSGNILDHSIQI 697
            Q +   P++L +H+Y NLAG  S NI DH + I
Sbjct:  164 QASQATPVNLTNHSYFNLAGQGSPNIYDHEVTI 196          
BLAST of CN185209 vs. ExPASy Swiss-Prot
Match: GALM_PIG (Aldose 1-epimerase OS=Sus scrofa GN=GALM PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.524e-35
Identity = 70/138 (50.72%), Postives = 90/138 (65.22%), Query Frame = 1
Query:  145 EVFELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTL 558
            E F+L +  ++V I ++G  IT+L V D+ G  +DVVLGF  ++ Y++   P+FG +VGRVANRI  G F+LDG EY L IN  PNSLHGG +GFDKV+W       G    I F   S DGEEGYPG++ V  TYTL
Sbjct:   20 EKFQLQSDQLRVDIISWGCTITALEVKDRQGRASDVVLGFAELKEYLQ-KHPYFGAVVGRVANRIAKGTFTLDGKEYKLAINNGPNSLHGGVRGFDKVLWTPRVLSNG----IEFSRVSPDGEEGYPGELKVWVTYTL 152          

HSP 2 Score: 35.4242 bits (80), Expect = 1.524e-35
Identity = 15/33 (45.45%), Postives = 21/33 (63.64%), Query Frame = 2
Query:  599 QKTSRPPISLAHHTY*NLAGHHSGNILDHSIQI 697
            Q +   P++L +H+Y NLAG  S NI DH + I
Sbjct:  164 QASQTTPVNLTNHSYFNLAGQGSPNIYDHEVTI 196          
BLAST of CN185209 vs. ExPASy Swiss-Prot
Match: GALM_HUMAN (Aldose 1-epimerase OS=Homo sapiens GN=GALM PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.985e-35
Identity = 69/138 (50.00%), Postives = 90/138 (65.22%), Query Frame = 1
Query:  145 EVFELNNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTL 558
            E F+L +  ++V I ++G  IT+L V D+ G  +DVVLGF  +E Y++   P+FG ++GRVANRI  G F +DG EY L INK PNSLHGG +GFDKV+W       G    + F   S DGEEGYPG++ V  TYTL
Sbjct:   20 EKFQLQSDLLRVDIISWGCTITALEVKDRQGRASDVVLGFAELEGYLQ-KQPYFGAVIGRVANRIAKGTFKVDGKEYHLAINKEPNSLHGGVRGFDKVLWTPRVLSNG----VQFSRISPDGEEGYPGELKVWVTYTL 152          

HSP 2 Score: 34.6538 bits (78), Expect = 1.985e-35
Identity = 15/33 (45.45%), Postives = 21/33 (63.64%), Query Frame = 2
Query:  599 QKTSRPPISLAHHTY*NLAGHHSGNILDHSIQI 697
            Q +   P++L +H+Y NLAG  S NI DH + I
Sbjct:  164 QASQATPVNLTNHSYFNLAGQASPNINDHEVTI 196          
BLAST of CN185209 vs. ExPASy Swiss-Prot
Match: GALM_ACICA (Aldose 1-epimerase OS=Acinetobacter calcoaceticus GN=mro PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.965e-24
Identity = 59/158 (37.34%), Postives = 85/158 (53.80%), Query Frame = 1
Query:  160 NNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAP---FFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAE-YKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTPN 621
            NN  + V   ++G +IT +  PD  G   ++VLGFD ++ Y          FG ++GR ANRI + KFSLDG  Y L  N  PNSLH G  GFDK VW+V     KGE    + K  S +G++G+PG + V   Y+L+     +++ +A  +     N
Sbjct:   44 NNNGVSVSFISFGGVITQILTPDAQGKQNNIVLGFDDLKGYEVTDTKEGIHFGGLIGRYANRIGNAKFSLDGKTYNLEKNNGPNSLHSGNPGFDKRVWQVKPLVSKGETVKASLKLTSPNGDQGFPGKLDVEVIYSLSDQNEFKIEYKAKTDQPTVVN 201          
BLAST of CN185209 vs. ExPASy Swiss-Prot
Match: GALM_SHIFL (Aldose 1-epimerase OS=Shigella flexneri GN=galM PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.417e-18
Identity = 52/153 (33.99%), Postives = 80/153 (52.29%), Query Frame = 1
Query:  160 NNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTP 618
            NN  M V + ++GA + S  +P   G+  + +LG  S E Y   AA F G  +GR ANRI + +++ DG   TL  ++  N LHGG +GFDK  W++       +  + F   S DG++G+PG++     Y LT    + +   A  + KP P
Sbjct:   22 NNAGMVVTLMDWGATLLSARIPLSDGSVREALLGCASPECYQDQAA-FLGASIGRYANRIANSRYTFDGETVTLSPSQGVNQLHGGPEGFDKRRWQIVNQ---NDRQVLFALSSDDGDQGFPGNLGATVQYRLTDDNRISITYRATVD-KPCP 169          
BLAST of CN185209 vs. ExPASy Swiss-Prot
Match: GALM_ECOLI (Aldose 1-epimerase OS=Escherichia coli (strain K12) GN=galM PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.417e-18
Identity = 52/153 (33.99%), Postives = 80/153 (52.29%), Query Frame = 1
Query:  160 NNGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINKPPNSLHGGFKGFDKVVWEVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTLTSSTTMRLDMEAVPENKPTP 618
            NN  M V + ++GA + S  +P   G+  + +LG  S E Y   AA F G  +GR ANRI + +++ DG   TL  ++  N LHGG +GFDK  W++       +  + F   S DG++G+PG++     Y LT    + +   A  + KP P
Sbjct:   22 NNAGMVVTLMDWGATLLSARIPLSDGSVREALLGCASPECYQDQAA-FLGASIGRYANRIANSRYTFDGETVTLSPSQGVNQLHGGPEGFDKRRWQIVNQ---NDRQVLFALSSDDGDQGFPGNLGATVQYRLTDDNRISITYRATVD-KPCP 169          
BLAST of CN185209 vs. ExPASy Swiss-Prot
Match: GAL10_PACTA (Bifunctional protein GAL10 OS=Pachysolen tannophilus GN=GAL10 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.742e-16
Identity = 50/136 (36.76%), Postives = 75/136 (55.15%), Query Frame = 1
Query:  163 NGSMQVKITNYGAIITSLSVPDKHGNWADVVLGFDSVEPYVKGAAPFFGCIVGRVANRIKDGKFSLDGVEYTLPINK-PPNSLHGGFKGFDKVVW---EVAEYKKGENPSITFKYRSRDGEEGYPGDVSVMATYTL 558
            NG  +V I+N+GA I +  +     N   + LGFD+++ Y++   PFFG  +GRVANRI  G   ++G  Y + +N+    SLHGG  G++K  +    V   +K +  ++ F     DG EGYPGDV     YT+
Sbjct:  371 NGKFEVSISNHGATIVAAKL-----NGIKLNLGFDNLKGYLREDNPFFGATIGRVANRISKGDLLINGTHYQVGLNELHRTSLHGGTYGYNKRTFLGPIVKTNEKEKETTMEFVLIDLDGTEGYPGDVETKVIYTV 501          
The following BLAST results are available for this feature:
BLAST of CN185209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
GALM_RAT3.761e-3751.45Aldose 1-epimerase OS=Rattus norvegicus GN=Galm PE... [more]
GALM_BOVIN1.838e-3651.45Aldose 1-epimerase OS=Bos taurus GN=GALM PE=2 SV=1[more]
GALM_MOUSE4.063e-3650.00Aldose 1-epimerase OS=Mus musculus GN=Galm PE=2 SV... [more]
GALM_PONAB8.980e-3650.72Aldose 1-epimerase OS=Pongo abelii GN=GALM PE=2 SV... [more]
GALM_PIG1.524e-3550.72Aldose 1-epimerase OS=Sus scrofa GN=GALM PE=2 SV=1[more]
GALM_HUMAN1.985e-3550.00Aldose 1-epimerase OS=Homo sapiens GN=GALM PE=1 SV... [more]
GALM_ACICA2.965e-2437.34Aldose 1-epimerase OS=Acinetobacter calcoaceticus ... [more]
GALM_SHIFL5.417e-1833.99Aldose 1-epimerase OS=Shigella flexneri GN=galM PE... [more]
GALM_ECOLI5.417e-1833.99Aldose 1-epimerase OS=Escherichia coli (strain K12... [more]
GAL10_PACTA1.742e-1636.76Bifunctional protein GAL10 OS=Pachysolen tannophil... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0006P16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006P16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185209 ID=CN185209; Name=CN185209; organism=Citrus sinensis; type=EST; length=697bp
GAGGCAGCAGCATCATGCCGGCAGCCTCCCGTAATTTGTAGTGACACTCA
CATCCCTATCTATTCTCTCCAGTCGCATATAAAATTCTATTAGTACTCAA
ATTTCACAACAAAGAGAAAAATGGCTGATCATACATTAAAACCAGAAGTG
TTTGAACTGAACAATGGAAGCATGCAAGTCAAAATTACCAATTATGGAGC
CATTATCACCTCACTTTCTGTACCTGACAAACATGGAAATTGGGCTGACG
TTGTTCTTGGATTCGACTCTGTCGAACCATACGTGAAAGGTGCTGCACCT
TTTTTTGGCTGCATTGTGGGTAGGGTTGCTAACAGAATTAAAGATGGGAA
GTTTTCTCTCGACGGGGTTGAATACACTTTGCCCATCAACAAGCCACCAA
ACAGTCTCCATGGTGGGTTCAAGGGTTTTGATAAAGTTGTCTGGGAGGTA
GCAGAATATAAGAAAGGTGAAAACCCTTCCATTACTTTCAAGTATCGCAG
CCGTGATGGCGAGGAAGGTTACCCAGGGGATGTTTCTGTGATGGCAACCT
ACACACTAACATCAAGCACGACAATGAGGCTTGACATGGAAGCAGTTCCA
GAAAACAAGCCGACCCCCAATCAGTTTAGCTCACCACACGTACTGAAACT
TAGCAGGCCATCATTCAGGGAACATACTTGACCACTCAATTCAAATA
back to top