CN185208

Overview
NameCN185208
Unique NameCN185208
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN185208_ssr16 microsatellite CN185208_ssr16:16..27. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5667 contig Csv1_Contig5667:78..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185208 vs. ExPASy Swiss-Prot
Match: UPTG_MAIZE (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Zea mays GN=UPTG PE=1 SV=2)

HSP 1 Score: 360.533 bits (924), Expect = 3.716e-99
Identity = 168/180 (93.33%), Postives = 174/180 (96.67%), Query Frame = 1
Query:   70 PAVPLLKDELDIVIPTIRNLDFLEQWRPFFQAYHLIIVQDGDPSKTIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYVYTIDDDCFVAKDPSGKEINALEQHIRNLLSPSTPFFFNTLYDPYRDGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKP 609
            P+ PLLKDELDIVIPTIRNLDFLE WR FFQ YHLIIVQDGDP+KTIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKY+YTIDDDCFVAKDPSGK+INALEQHI+NLLSPSTPFFFNTLYDPYR+GADFVRGYPFSLREG  TAVSHGLWLNIPDYDAPTQLVKP
Sbjct:   13 PSTPLLKDELDIVIPTIRNLDFLEMWRAFFQPYHLIIVQDGDPTKTIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLSPSTPFFFNTLYDPYREGADFVRGYPFSLREGAHTAVSHGLWLNIPDYDAPTQLVKP 192          
BLAST of CN185208 vs. ExPASy Swiss-Prot
Match: UPTG1_SOLTU (Alpha-1,4-glucan-protein synthase [UDP-forming] 1 OS=Solanum tuberosum GN=UPTG1 PE=1 SV=2)

HSP 1 Score: 360.533 bits (924), Expect = 3.716e-99
Identity = 168/179 (93.85%), Postives = 172/179 (96.09%), Query Frame = 1
Query:   73 AVPLLKDELDIVIPTIRNLDFLEQWRPFFQAYHLIIVQDGDPSKTIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYVYTIDDDCFVAKDPSGKEINALEQHIRNLLSPSTPFFFNTLYDPYRDGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKP 609
            A PLLKDELDIVIPTIRNLDFLE WRPFFQ YHLIIVQDGDPSK IKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKY+YTIDDDCFVAKDPSGK+INALEQHI+NLL PSTP FFNTLYDPYRDGADFVRGYPFS+REG PTAVSHGLWLNIPDYDAPTQLVKP
Sbjct:    4 ATPLLKDELDIVIPTIRNLDFLEMWRPFFQPYHLIIVQDGDPSKIIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPHFFNTLYDPYRDGADFVRGYPFSMREGAPTAVSHGLWLNIPDYDAPTQLVKP 182          
BLAST of CN185208 vs. ExPASy Swiss-Prot
Match: UPTG_PEA (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Pisum sativum GN=UPTG PE=1 SV=1)

HSP 1 Score: 359.762 bits (922), Expect = 6.339e-99
Identity = 167/177 (94.35%), Postives = 172/177 (97.18%), Query Frame = 1
Query:   79 PLLKDELDIVIPTIRNLDFLEQWRPFFQAYHLIIVQDGDPSKTIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYVYTIDDDCFVAKDPSGKEINALEQHIRNLLSPSTPFFFNTLYDPYRDGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKP 609
            PLLKDELDIVIPTIRNLDFLE WRPFF+ YHLIIVQDGDPSK IKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKY+YTIDDDCFVAKDP+G EINALEQHI+NLLSPSTPFFFNTLYDPYR+G DFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKP
Sbjct:    9 PLLKDELDIVIPTIRNLDFLEMWRPFFEQYHLIIVQDGDPSKVIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPTGHEINALEQHIKNLLSPSTPFFFNTLYDPYREGTDFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKP 185          
BLAST of CN185208 vs. ExPASy Swiss-Prot
Match: UPTG2_SOLTU (Alpha-1,4-glucan-protein synthase [UDP-forming] 2 OS=Solanum tuberosum GN=UPTG2 PE=1 SV=1)

HSP 1 Score: 352.443 bits (903), Expect = 1.012e-96
Identity = 164/177 (92.66%), Postives = 169/177 (95.48%), Query Frame = 1
Query:   79 PLLKDELDIVIPTIRNLDFLEQWRPFFQAYHLIIVQDGDPSKTIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYVYTIDDDCFVAKDPSGKEINALEQHIRNLLSPSTPFFFNTLYDPYRDGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKP 609
            PLLKDELDIVIPTIRNLDFLE WRPFFQ YHLIIVQDGDPSK I VPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKY+YTIDDDCFVAKDPSGK+INALEQHI+NLL PSTP FFNTLYDPYR+GADFVRGYPFS+REG  TAVSHGLWLNIPDYDAPTQLVKP
Sbjct:   10 PLLKDELDIVIPTIRNLDFLEMWRPFFQPYHLIIVQDGDPSKIINVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPSGKDINALEQHIKNLLCPSTPHFFNTLYDPYREGADFVRGYPFSMREGAATAVSHGLWLNIPDYDAPTQLVKP 186          
The following BLAST results are available for this feature:
BLAST of CN185208 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
UPTG_MAIZE3.716e-9993.33Alpha-1,4-glucan-protein synthase [UDP-forming] OS... [more]
UPTG1_SOLTU3.716e-9993.85Alpha-1,4-glucan-protein synthase [UDP-forming] 1 ... [more]
UPTG_PEA6.339e-9994.35Alpha-1,4-glucan-protein synthase [UDP-forming] OS... [more]
UPTG2_SOLTU1.012e-9692.66Alpha-1,4-glucan-protein synthase [UDP-forming] 2 ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0006P14_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006P14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185208 ID=CN185208; Name=CN185208; organism=Citrus sinensis; type=EST; length=612bp
GAGGTTTCTTTTTCCTTCTTTCTTTCTTTTTTCTGAAACAAAATGGCGGC
GGCAGCAACGACAACAAGGCCGGCTGTGCCGCTGCTGAAAGACGAGCTGG
ACATCGTGATCCCCACGATCCGAAACTTGGACTTCTTGGAGCAGTGGAGG
CCGTTTTTTCAGGCCTATCATTTGATCATCGTTCAGGATGGTGACCCTTC
GAAGACCATCAAAGTCCCTGAGGGATTTGACTACGAGCTCTATAATCGTA
ACGATATTAACCGGATTCTGGGTCCCAAGGCTTCTTGCATATCCTTCAAG
GACTCTGCCTGCAGGTGCTTTGGCTACATGGTGTCCAAGAAGAAGTATGT
TTACACCATTGATGACGATTGCTTTGTTGCTAAAGACCCATCTGGCAAAG
AAATTAATGCACTGGAGCAGCACATAAGGAACCTGCTGAGTCCATCCACC
CCATTTTTCTTTAACACTCTGTACGACCCATACCGTGATGGAGCTGACTT
CGTTCGCGGATATCCGTTCAGTCTTCGTGAGGGTGTCCCCACTGCTGTTT
CTCATGGCCTCTGGCTCAACATCCCAGATTATGATGCTCCCACCCAGCTT
GTCAAGCCTCTT
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