CN185205

Overview
NameCN185205
Unique NameCN185205
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13845 contig Csv1_Contig13845:23..843. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185205 vs. ExPASy Swiss-Prot
Match: TPK1_MOUSE (Thiamin pyrophosphokinase 1 OS=Mus musculus GN=Tpk1 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.693e-27
Identity = 74/199 (37.19%), Postives = 110/199 (55.28%), Query Frame = -1
Query:  219 RRRYKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNHCYGFVSLIYWQLRILVA-GALGGRFDHEAGNINVLYRFSDIR---IILLSDDCHIQLLPKTHRHDIYIQSSVEGPHCGLIPIGMPSGSTSTTGLQWDLDNTETRFGGLVSTSNIVKGE-KVTVRSDSDLLWTISIKN 800
            R  + P+ + GD DSIR EV ++Y   G  ++  + DQD TD  KC+  ++      E              Q+ ++V  G LGGRFD    ++N L++ + I    II++  D  I LL +  +H +++ + +EG  CGLIP+G P    +TTGL+W+L N    FG LVSTSN   G   VTV +D  LLWT++IK+
Sbjct:   60 RESFLPEFVSGDFDSIRPEVKEYYTKKGCDLIS-TPDQDHTDFTKCLQVLQRKIEEKEL-------------QVDVIVTLGGLGGRFDQIMASVNTLFQATHITPVPIIIIQKDSLIYLL-QPGKHRLHVDTGMEGSWCGLIPVGQPCNQVTTTGLKWNLTNDVLGFGTLVSTSNTYDGSGLVTVETDHPLLWTMAIKS 243          
BLAST of CN185205 vs. ExPASy Swiss-Prot
Match: TPK1_HUMAN (Thiamin pyrophosphokinase 1 OS=Homo sapiens GN=TPK1 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.773e-27
Identity = 73/198 (36.87%), Postives = 113/198 (57.07%), Query Frame = -1
Query:  219 RRRYKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNHCYGFVSLIYWQLRILVAGALGGRFDHEAGNINVLYRFSDIR---IILLSDDCHIQLLPKTHRHDIYIQSSVEGPHCGLIPIGMPSGSTSTTGLQWDLDNTETRFGGLVSTSNIVKGE-KVTVRSDSDLLWTISIKN 800
            R  + P+ I GD DSIR EV ++YA+ G +++  + DQD TD  KC+  ++     +E+ +              I+  G L GRFD    ++N L++ + I    II++ ++  I LL +  +H +++ + +EG  CGLIP+G P    +TTGL+W+L N    FG LVSTSN   G   VTV +D  LLWT++IK+
Sbjct:   60 RESFLPEFINGDFDSIRPEVREYYATKGCELIS-TPDQDHTDFTKCLKMLQK---KIEEKDLKVDV---------IVTLGGLAGRFDQIMASVNTLFQATHITPFPIIIIQEESLIYLL-QPGKHRLHVDTGMEGDWCGLIPVGQPCMQVTTTGLKWNLTNDVLAFGTLVSTSNTYDGSGVVTVETDHPLLWTMAIKS 243          
BLAST of CN185205 vs. ExPASy Swiss-Prot
Match: TPK1_BOVIN (Thiamin pyrophosphokinase 1 OS=Bos taurus GN=TPK1 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.445e-26
Identity = 70/198 (35.35%), Postives = 111/198 (56.06%), Query Frame = -1
Query:  219 RRRYKPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNHCYGFVSLIYWQLRILVAGALGGRFDHEAGNINVLYR---FSDIRIILLSDDCHIQLLPKTHRHDIYIQSSVEGPHCGLIPIGMPSGSTSTTGLQWDLDNTETRFGGLVSTSNIVKGE-KVTVRSDSDLLWTISIKN 800
            R  + P+ I GD DSIR EV + YA  G +++  + DQD TD  KC+  ++     +E+ +              I+  G L GRFD    +++ L++    + + +I++ ++  I LL +  +H +++ + +EG  CGLIP+G P    +TTGL+W+L +    FG LVSTSN   G   VTV +D  LLWT++IKN
Sbjct:   60 RESFLPEFISGDFDSIRPEVREHYAIKGCEIIS-TPDQDHTDFTKCLEVLQK---KIEEKDLQVDM---------IVTLGGLAGRFDQIMASVSTLFQAPQITSLPVIIIQEESLIYLL-QPGKHKLHVDTGMEGDWCGLIPVGQPCNQVTTTGLKWNLTHQMLGFGTLVSTSNTYDGSGVVTVETDHPLLWTMAIKN 243          
BLAST of CN185205 vs. ExPASy Swiss-Prot
Match: TNR3_SCHPO (Thiamine pyrophosphokinase OS=Schizosaccharomyces pombe GN=tnr3 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.201e-18
Identity = 56/192 (29.17%), Postives = 98/192 (51.04%), Query Frame = -1
Query:  222 KPDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNHCYGFVSLIYWQLRILVAGALGGRFDHEAGNINVLY---RFSDIRIILLSDDCHIQLLPKTHRHDIYIQSSVEGPHCGLIPIGMPSGSTSTTGLQWDLDNTETRFGGLVSTSNIVKGEKVTVRSDSDLLWTISIK 788
            KPD + GD DS+  E   +Y  +G  +V +   Q+TTD  KC   I++           +G  +       I V   +GGR DH  GN+N L+     S+   + L  + ++  L +   + +    ++ G HCGL+P+G       T+GL+W++++   +FGGLVS+ N+V    VT+  ++ ++WT+  +
Sbjct:  397 KPDYVVGDFDSLTDETKAYYKEMGVNIVFDPC-QNTTDFMKCHKIIKE-----------HGIDT-------IFVLCGMGGRVDHAIGNLNHLFWAASISEKNEVFLLTELNVSTLLQPGINHVDCHDNI-GLHCGLLPVGQSVYVKKTSGLEWNIEDRICQFGGLVSSCNVVTKATVTIEVNNFIVWTMETR 568          
BLAST of CN185205 vs. ExPASy Swiss-Prot
Match: TPK1_CAEEL (Thiamin pyrophosphokinase 1 OS=Caenorhabditis elegans GN=tpk-1 PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 6.037e-17
Identity = 61/191 (31.94%), Postives = 97/191 (50.79%), Query Frame = -1
Query:  219 PDLIKGDMDSIRKEVMDFYASLGTKVVDESHDQDTTDLHKCVAYIRDCTPNLEKSNHCYGFVSLIYWQLR-ILVAGALGGRFDHEAGNINVLYRFSDIRI-ILLSDDCHIQLLPKTHRHDIYIQSSVEGPHCGLIPIGMPSGSTSTTGLQWDLDNTETRFGGLVSTSNIVKGEKVTVRSDSDLLWTISIKN 785
            P +I GD DSI K++     +   KVV    DQD TDL K V +             C    +L  W+   I+V G L GRFDH    ++ L RF D +  +++ D  ++ L   T   ++ +   +    CG+IPI       S+ GL+++++N    FG L+STSN V   +V ++S S L+++I ++N
Sbjct:   63 PHIICGDFDSINKQI----DTKNAKVV-HLPDQDYTDLSKSVQW-------------CLEQKTLTSWEFENIVVLGGLNGRFDHTMSTLSSLIRFVDSQTPVIVLDSRNLVLAVPTGDSNLDVNLEMTTKMCGIIPIVQKETIVSSIGLKYEMENLALEFGKLISTSNEVTTSQVFLKSSSSLIFSIELEN 235          
The following BLAST results are available for this feature:
BLAST of CN185205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
TPK1_MOUSE1.693e-2737.19Thiamin pyrophosphokinase 1 OS=Mus musculus GN=Tpk... [more]
TPK1_HUMAN3.773e-2736.87Thiamin pyrophosphokinase 1 OS=Homo sapiens GN=TPK... [more]
TPK1_BOVIN2.445e-2635.35Thiamin pyrophosphokinase 1 OS=Bos taurus GN=TPK1 ... [more]
TNR3_SCHPO3.201e-1829.17Thiamine pyrophosphokinase OS=Schizosaccharomyces ... [more]
TPK1_CAEEL6.037e-1731.94Thiamin pyrophosphokinase 1 OS=Caenorhabditis eleg... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0006P11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006P11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185205 ID=CN185205; Name=CN185205; organism=Citrus sinensis; type=EST; length=821bp
GAGGTACGACCTAAGCGAGAGATCCATCTCTCCAAATAATTGATATAATA
TGTAATCCCGCAATCACAGAGTAAAATATTCAAAATTTAATACAGACTTT
GACTACATATCACCTTTAAATATTTTTAATTGCAAGAGGACATTAATGTA
GGTCAAAGAAAACTTGGATATTTGCTGACTTTACATCTCTTCTTGAAAGC
AATTTCTTTTTTTTACTGATTTTTTATGGATATTGTCCAAAGAAGATCTG
AGTCAGATCTCACAGTTACTTTCTCACCTTTAACAATATTTGAGGTACTT
ACTAAACCGCCAAATCTAGTCTCTGTGTTATCAAGATCCCACTGGAGCCC
AGTCGTTGAAGTGCTCCCCGATGGCATCCCAATAGGGATGAGTCCACAAT
GTGGACCCTCTACAGAAGATTGTATGTAGATATCGTGGCGGTGAGTTTTC
GGGAGAAGTTGGATATGGCAATCATCAGATAAAAGTATTATCCGTATGTC
TGAGAAGCGATATAAAACATTTATGTTTCCAGCCTCATGGTCAAACCGTC
CACCAAGTGCCCCAGCAACAAGAATGCGGAGCTGCCAATAGATTAGGGAA
ACAAACCCATAACAATGATTAGACTTCTCTAAGTTTGGTGTGCAGTCGCG
AATATATGCTACACATTTATGTAGGTCCGTGGTGTCCTGATCATGCGATT
CATCTACCACTTTGGTTCCCAAACTTGCATAAAAATCCATTACTTCTTTT
CGGATTGAATCCATGTCTCCTTTAATGAGGTCTGGCTTGTACCTGCGGCG
AATATCAGAAGGATCTTCATG
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