CN185203
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RK27_ARATH (50S ribosomal protein L27, chloroplastic OS=Arabidopsis thaliana GN=RPL27 PE=1 SV=1) HSP 1 Score: 233.802 bits (595), Expect = 6.587e-61 Identity = 119/143 (83.22%), Postives = 126/143 (88.11%), Query Frame = -3 Query: 99 IESAHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPREVQPENPNSYRARKREYFRLQREKKKARKEAY---LAQPQLVLASALDYAADGLPNC 518 IESAHKKGAGSTKNGRDS GQRLGVKI+GDQVAKPGAIIVRQRGTKFH GKNVG+GKDHTIFSLIDGLVKFEKFGPDRK+ISVYPRE+ PENPNSYRARKRE FRLQREKKKAR+E Y L P+LVLASA A+ P C Sbjct: 56 IESAHKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFSLIDGLVKFEKFGPDRKKISVYPREIVPENPNSYRARKRENFRLQREKKKARRENYSYTLPTPELVLASASVDDAEANPEC 198
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RK27_TOBAC (50S ribosomal protein L27, chloroplastic OS=Nicotiana tabacum GN=RPL27 PE=1 SV=1) HSP 1 Score: 224.557 bits (571), Expect = 3.996e-58 Identity = 109/121 (90.08%), Postives = 115/121 (95.04%), Query Frame = -3 Query: 156 IESAHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPREVQPENPNSYRARKREYFRLQREKKKARKEAYLAQ 518 IESAHKKGAGSTKNGRDS GQRLGVKIFGDQVAKPG+IIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRK+ISVYPREVQPENPNSYR RKRE FRLQRE++KAR+E + Q Sbjct: 49 IESAHKKGAGSTKNGRDSPGQRLGVKIFGDQVAKPGSIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKKISVYPREVQPENPNSYRNRKRESFRLQRERRKARREGVILQ 169
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RK27_ORYSJ (50S ribosomal protein L27, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL27 PE=2 SV=1) HSP 1 Score: 213.001 bits (541), Expect = 1.203e-54 Identity = 102/129 (79.07%), Postives = 118/129 (91.47%), Query Frame = -3 Query: 132 IESAHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPREVQPENPNSYRARKREYFRLQREKKKARKEAYLAQPQLVLASA 518 I+ AHKKGAGSTKNGRDS GQRLGVKI+GDQVAKPGAII+RQRGT+ +PG NVG+GKDHT+FSLIDGLVKFEK+GPD+K++SVYP E QPENPNSYRARKREYFR+QRE+KKAR E + + QLVLA+A Sbjct: 58 IQMAHKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIIRQRGTRVYPGNNVGMGKDHTLFSLIDGLVKFEKYGPDKKKVSVYPYEKQPENPNSYRARKREYFRMQRERKKARAEG-IVEVQLVLAAA 185
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_NITSB (50S ribosomal protein L27 OS=Nitratiruptor sp. (strain SB155-2) GN=rpmA PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 2.984e-29 Identity = 59/84 (70.24%), Postives = 71/84 (84.52%), Query Frame = -3 Query: 258 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPRE 509 AHKKG GST+N RDS G+RLGVK FG + + G II+RQRGTK HPG NVGLGKDHTIF+LIDG+VKFE++G DR+++SVYP E Sbjct: 2 AHKKGQGSTQNNRDSAGRRLGVKKFGGEFVRAGNIIIRQRGTKVHPGNNVGLGKDHTIFALIDGVVKFERYGKDRQKVSVYPVE 85
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_MICAN (50S ribosomal protein L27 OS=Microcystis aeruginosa (strain NIES-843) GN=rpmA PE=3 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 9.600e-28 Identity = 59/85 (69.41%), Postives = 68/85 (80.00%), Query Frame = -3 Query: 255 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPREV 509 AHKKG GST+NGRDSR QRLGVK +G QV K G I++RQRGTK HPGKNVG G D T+F+LIDG+VKFE R+Q+SVYP EV Sbjct: 2 AHKKGTGSTRNGRDSRSQRLGVKRYGGQVVKAGNILIRQRGTKVHPGKNVGRGGDDTLFALIDGVVKFEYKDKSRRQVSVYPAEV 86
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_GEOBB (50S ribosomal protein L27 OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=rpmA PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.638e-27 Identity = 56/82 (68.29%), Postives = 67/82 (81.71%), Query Frame = -3 Query: 264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509 AHKKG GS++NGRDS GQRLG K FG + K G II RQ GTK HPG NVGLGKD+T+F+LI+G+VKFE+ G DRK++SVYP Sbjct: 2 AHKKGVGSSRNGRDSDGQRLGCKKFGGEAVKAGNIIYRQHGTKIHPGNNVGLGKDYTLFALIEGVVKFERMGKDRKKVSVYP 83
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_CYAP4 (50S ribosomal protein L27 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rpmA PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.638e-27 Identity = 56/82 (68.29%), Postives = 67/82 (81.71%), Query Frame = -3 Query: 264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509 AHKKG GST+NGRDS QRLGVK +G +V + G I+VRQRGTKFHPG NVG G D T+F+ IDG+V FE++G DRK+ISVYP Sbjct: 2 AHKKGTGSTRNGRDSNAQRLGVKRYGGEVVRAGNILVRQRGTKFHPGNNVGRGNDDTLFATIDGVVTFERYGKDRKRISVYP 83
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_GEOSM (50S ribosomal protein L27 OS=Geobacter sp. (strain M21) GN=rpmA PE=3 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 2.139e-27 Identity = 56/82 (68.29%), Postives = 67/82 (81.71%), Query Frame = -3 Query: 264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509 AHKKG GS++NGRDS GQRLG K FG + K G II RQ GTK HPG NVGLGKD+T+F+LI+G+VKFE+ G DRK++SVYP Sbjct: 2 AHKKGVGSSRNGRDSDGQRLGCKKFGGEAVKAGNIIYRQHGTKIHPGNNVGLGKDYTLFALIEGVVKFERMGRDRKKVSVYP 83
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_GEOUR (50S ribosomal protein L27 OS=Geobacter uraniireducens (strain Rf4) GN=rpmA PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 3.648e-27 Identity = 56/82 (68.29%), Postives = 67/82 (81.71%), Query Frame = -3 Query: 264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509 AHKKG GST+NGRDS GQRLG K FG + K G II RQ GTK HPG NVGLG+D+T+F+LI+G+VKFE+ G DRK++SVYP Sbjct: 2 AHKKGVGSTRNGRDSDGQRLGCKKFGGEHVKAGNIIYRQHGTKIHPGNNVGLGRDYTLFALIEGVVKFERMGRDRKKVSVYP 83
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_GEOSF (50S ribosomal protein L27 OS=Geobacter sp. (strain FRC-32) GN=rpmA PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 4.765e-27 Identity = 56/82 (68.29%), Postives = 67/82 (81.71%), Query Frame = -3 Query: 264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509 AHKKG GS++NGRDS GQRLG K FG + K G II RQ GTK HPG NVGLGKD+T+F+LI+G+VKFE+ G DRK++SVYP Sbjct: 2 AHKKGVGSSRNGRDSDGQRLGCKKFGGEHVKAGNIIYRQHGTKIHPGNNVGLGKDYTLFALIEGVVKFERLGRDRKKVSVYP 83 The following BLAST results are available for this feature:
BLAST of CN185203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN185203 ID=CN185203; Name=CN185203; organism=Citrus sinensis; type=EST; length=691bpback to top |