CN185203

Overview
NameCN185203
Unique NameCN185203
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1262 contig Csv1_Contig1262:164..854. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RK27_ARATH (50S ribosomal protein L27, chloroplastic OS=Arabidopsis thaliana GN=RPL27 PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.587e-61
Identity = 119/143 (83.22%), Postives = 126/143 (88.11%), Query Frame = -3
Query:   99 IESAHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPREVQPENPNSYRARKREYFRLQREKKKARKEAY---LAQPQLVLASALDYAADGLPNC 518
            IESAHKKGAGSTKNGRDS GQRLGVKI+GDQVAKPGAIIVRQRGTKFH GKNVG+GKDHTIFSLIDGLVKFEKFGPDRK+ISVYPRE+ PENPNSYRARKRE FRLQREKKKAR+E Y   L  P+LVLASA    A+  P C
Sbjct:   56 IESAHKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFSLIDGLVKFEKFGPDRKKISVYPREIVPENPNSYRARKRENFRLQREKKKARRENYSYTLPTPELVLASASVDDAEANPEC 198          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RK27_TOBAC (50S ribosomal protein L27, chloroplastic OS=Nicotiana tabacum GN=RPL27 PE=1 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.996e-58
Identity = 109/121 (90.08%), Postives = 115/121 (95.04%), Query Frame = -3
Query:  156 IESAHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPREVQPENPNSYRARKREYFRLQREKKKARKEAYLAQ 518
            IESAHKKGAGSTKNGRDS GQRLGVKIFGDQVAKPG+IIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRK+ISVYPREVQPENPNSYR RKRE FRLQRE++KAR+E  + Q
Sbjct:   49 IESAHKKGAGSTKNGRDSPGQRLGVKIFGDQVAKPGSIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKKISVYPREVQPENPNSYRNRKRESFRLQRERRKARREGVILQ 169          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RK27_ORYSJ (50S ribosomal protein L27, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL27 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.203e-54
Identity = 102/129 (79.07%), Postives = 118/129 (91.47%), Query Frame = -3
Query:  132 IESAHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPREVQPENPNSYRARKREYFRLQREKKKARKEAYLAQPQLVLASA 518
            I+ AHKKGAGSTKNGRDS GQRLGVKI+GDQVAKPGAII+RQRGT+ +PG NVG+GKDHT+FSLIDGLVKFEK+GPD+K++SVYP E QPENPNSYRARKREYFR+QRE+KKAR E  + + QLVLA+A
Sbjct:   58 IQMAHKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIIRQRGTRVYPGNNVGMGKDHTLFSLIDGLVKFEKYGPDKKKVSVYPYEKQPENPNSYRARKREYFRMQRERKKARAEG-IVEVQLVLAAA 185          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_NITSB (50S ribosomal protein L27 OS=Nitratiruptor sp. (strain SB155-2) GN=rpmA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.984e-29
Identity = 59/84 (70.24%), Postives = 71/84 (84.52%), Query Frame = -3
Query:  258 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPRE 509
            AHKKG GST+N RDS G+RLGVK FG +  + G II+RQRGTK HPG NVGLGKDHTIF+LIDG+VKFE++G DR+++SVYP E
Sbjct:    2 AHKKGQGSTQNNRDSAGRRLGVKKFGGEFVRAGNIIIRQRGTKVHPGNNVGLGKDHTIFALIDGVVKFERYGKDRQKVSVYPVE 85          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_MICAN (50S ribosomal protein L27 OS=Microcystis aeruginosa (strain NIES-843) GN=rpmA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.600e-28
Identity = 59/85 (69.41%), Postives = 68/85 (80.00%), Query Frame = -3
Query:  255 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYPREV 509
            AHKKG GST+NGRDSR QRLGVK +G QV K G I++RQRGTK HPGKNVG G D T+F+LIDG+VKFE     R+Q+SVYP EV
Sbjct:    2 AHKKGTGSTRNGRDSRSQRLGVKRYGGQVVKAGNILIRQRGTKVHPGKNVGRGGDDTLFALIDGVVKFEYKDKSRRQVSVYPAEV 86          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_GEOBB (50S ribosomal protein L27 OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=rpmA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.638e-27
Identity = 56/82 (68.29%), Postives = 67/82 (81.71%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GS++NGRDS GQRLG K FG +  K G II RQ GTK HPG NVGLGKD+T+F+LI+G+VKFE+ G DRK++SVYP
Sbjct:    2 AHKKGVGSSRNGRDSDGQRLGCKKFGGEAVKAGNIIYRQHGTKIHPGNNVGLGKDYTLFALIEGVVKFERMGKDRKKVSVYP 83          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_CYAP4 (50S ribosomal protein L27 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rpmA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.638e-27
Identity = 56/82 (68.29%), Postives = 67/82 (81.71%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GST+NGRDS  QRLGVK +G +V + G I+VRQRGTKFHPG NVG G D T+F+ IDG+V FE++G DRK+ISVYP
Sbjct:    2 AHKKGTGSTRNGRDSNAQRLGVKRYGGEVVRAGNILVRQRGTKFHPGNNVGRGNDDTLFATIDGVVTFERYGKDRKRISVYP 83          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_GEOSM (50S ribosomal protein L27 OS=Geobacter sp. (strain M21) GN=rpmA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.139e-27
Identity = 56/82 (68.29%), Postives = 67/82 (81.71%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GS++NGRDS GQRLG K FG +  K G II RQ GTK HPG NVGLGKD+T+F+LI+G+VKFE+ G DRK++SVYP
Sbjct:    2 AHKKGVGSSRNGRDSDGQRLGCKKFGGEAVKAGNIIYRQHGTKIHPGNNVGLGKDYTLFALIEGVVKFERMGRDRKKVSVYP 83          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_GEOUR (50S ribosomal protein L27 OS=Geobacter uraniireducens (strain Rf4) GN=rpmA PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.648e-27
Identity = 56/82 (68.29%), Postives = 67/82 (81.71%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GST+NGRDS GQRLG K FG +  K G II RQ GTK HPG NVGLG+D+T+F+LI+G+VKFE+ G DRK++SVYP
Sbjct:    2 AHKKGVGSTRNGRDSDGQRLGCKKFGGEHVKAGNIIYRQHGTKIHPGNNVGLGRDYTLFALIEGVVKFERMGRDRKKVSVYP 83          
BLAST of CN185203 vs. ExPASy Swiss-Prot
Match: RL27_GEOSF (50S ribosomal protein L27 OS=Geobacter sp. (strain FRC-32) GN=rpmA PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.765e-27
Identity = 56/82 (68.29%), Postives = 67/82 (81.71%), Query Frame = -3
Query:  264 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKFHPGKNVGLGKDHTIFSLIDGLVKFEKFGPDRKQISVYP 509
            AHKKG GS++NGRDS GQRLG K FG +  K G II RQ GTK HPG NVGLGKD+T+F+LI+G+VKFE+ G DRK++SVYP
Sbjct:    2 AHKKGVGSSRNGRDSDGQRLGCKKFGGEHVKAGNIIYRQHGTKIHPGNNVGLGKDYTLFALIEGVVKFERLGRDRKKVSVYP 83          
The following BLAST results are available for this feature:
BLAST of CN185203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK27_ARATH6.587e-6183.2250S ribosomal protein L27, chloroplastic OS=Arabid... [more]
RK27_TOBAC3.996e-5890.0850S ribosomal protein L27, chloroplastic OS=Nicoti... [more]
RK27_ORYSJ1.203e-5479.0750S ribosomal protein L27, chloroplastic OS=Oryza ... [more]
RL27_NITSB2.984e-2970.2450S ribosomal protein L27 OS=Nitratiruptor sp. (st... [more]
RL27_MICAN9.600e-2869.4150S ribosomal protein L27 OS=Microcystis aeruginos... [more]
RL27_GEOBB1.638e-2768.2950S ribosomal protein L27 OS=Geobacter bemidjiensi... [more]
RL27_CYAP41.638e-2768.2950S ribosomal protein L27 OS=Cyanothece sp. (strai... [more]
RL27_GEOSM2.139e-2768.2950S ribosomal protein L27 OS=Geobacter sp. (strain... [more]
RL27_GEOUR3.648e-2768.2950S ribosomal protein L27 OS=Geobacter uraniireduc... [more]
RL27_GEOSF4.765e-2768.2950S ribosomal protein L27 OS=Geobacter sp. (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006P10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185203 ID=CN185203; Name=CN185203; organism=Citrus sinensis; type=EST; length=691bp
GAGGCCTATTTCCATTGTGTGACGATAATGGGAAAAAAAAATTCAATAAG
ATACAAGAACTAACAAGTCGAAAAATAATGGGCAGCACTTCAGACTTAGC
AATTGGGAAGGCCATCAGCAGCATAATCGAGAGCAGAAGCAAGCACCAGC
TGAGGTTGAGCCAAATAAGCTTCCTTTCTAGCCTTCTTTTTCTCCCGCTG
CAACCTGAAGTACTCTCGCTTCCTTGCTCTGTAACTGTTGGGATTCTCAG
GCTGCACTTCTCTTGGGTAAACACTTATCTGCTTCCTGTCAGGCCCAAAC
TTCTCAAATTTGACTAGTCCATCAATCAAAGAGAATATTGTATGGTCCTT
GCCAAGCCCCACATTTTTCCCTGGATGGAACTTGGTGCCACGCTGGCGGA
CGATAATTGCGCCGGGCTTGGCGACCTGGTCACCGAAAATCTTGACGCCG
AGCCGCTGTCCCCGCGAATCACGGCCGTTCTTTGTGCTACCGGCTCCCTT
CTTGTGGGCAGATTCGATAGTTAAGGGTAGCGGCGACGTTGGTGGGAGGG
AAACGGTGACGGATTTGGGACACACGGTGAAATCGCCTTTGAGGAAGGAG
GAGGAAGAGCTTGAAGATAAAGAGAGACCCTTAAACGAGCCGATTAGGCT
CGCACTCATTGAAGCTGTTGCCATTTTTCTTCTCTCGGTTT
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